BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04310.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317300 jgi|Araly1|317300|fgenesh1_pm.C_scaffold_3000316 1158 0.0
> Ahg317300 jgi|Araly1|317300|fgenesh1_pm.C_scaffold_3000316
Length=804
Score = 1158 bits (627), Expect = 0.0
Identities = 752/812 (93%), Gaps = 10/812 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAATCTGCTGTATCTTCAGCTTTCTTCTTGCGTCGTCAGAGGCAGATTCTGTTCT 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1 ATGGCGAATCTGCTGTATCTTCAGCTTTCTTCTTGCGTAGTCAGAGGCAGATACTGTTCT 60
Query 61 CTAAACTGCGATTTTGATCTCTGCCCAAATATCGTGAGCCGCGGTTCCTTTGATTGCCGC 120
| ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct 61 ATGAACTGCGATTTTGATCTCTGCCCAAGTATCGTGAGCCGCGGTTCCTTTAAGTGCCGC 120
Query 121 GCCTCCCGCGGTCCTAGCTGGGAGGAGGAGCTCTTCCGCGACGAAGGTTTTGCTTCG-TT 179
| |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 121 GTCTCCCGTGGTCCTAGCTGGGAGGAGGAGCTCTTCCGCGACGAAGGGTTTGC-TCGATT 179
Query 180 TGAGTTCGGAAACCGTAAAAAGAAGAGGCCTTGGTGGCTtgatgatgatgatgacgatga 239
||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||
Sbjct 180 TGAGTTCGGAAACCGCAAAAAGAAGAGGCCATGGTGGC-T--CGATGATGATGACGATGA 236
Query 240 cgacaacgatgattggatgaatgaAGAAGAAGAAGACTGGTCTATGGTTTTTGAGGTATT 299
||| | |||||||||| | || ||||||||||||||| || |||||||||||| |
Sbjct 237 CGATTATGATGATTGGA--CA-GATGAAGAAGAAGACTGGAGTACAGTTTTTGAGGTAGT 293
Query 300 TAGAACATTGAGTTGGATGCTTGCACCAATTGGCATATCTTTGCTTCTTGGAACAGATTC 359
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 294 TAGGACTTTGAGTTGGATGCTTGCACCAATCGGCATATCTTTGCTTCTTGGAACAGATTC 353
Query 360 AAACGCGGGTGTAATGGCATTAGCAGTTCCTTTAGTGCAATCTGTGTTGTCTCTTGTGGT 419
|||||||||| | ||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 354 AAACGCGGGTTTTATGGCATTAGCTGTTCCTTTAGTTCAATCTGTGTTGTCCCTTGTGGT 413
Query 420 TAGTAAAGTTTGGAGCAGGCCAAGCATTAGGTCTATGAAAAGAAGTAGAAGAGATACATT 479
|||||| || ||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 414 TAGTAAGGTCTGGAGCAGGCCAAGCATTAGGCCTATGAAAAGAAGCAGAAGAGATTCATT 473
Query 480 TTCGAGATCTGCGAGTGTAAGTAGTGGAAGAACAAGGAAAGCTAGGCAAGGAGGAAACAT 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 474 TTCGAGATCTGCGAGTGTAAGTAGTGCAAGAACAAGGAAAGCTAGGCAAGGAGAAAACAT 533
Query 540 GAGGGGTGGTGTAGATAAGGGAGGATACAAGTCATGGATAGTAGGAGATGATGATTCTAA 599
|||||||||||| ||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 534 GAGGGGTGGTGTGGATAAGGAAGGATACAAGTCATGGATGGTAGGAGATGCTGATTCTAA 593
Query 600 CAGCATGGGTACTGGCTATGGAGGATGGGATGATCTAGATACGCTAAGGGAGATTAGAAA 659
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 594 CATCATGGGTACTGGCTATGGAGGATGGGATGATCTAGACACGCTAAGGGAGATTAGAAA 653
Query 660 TGACAATCCATTAAACGAGAATGTTCGTCCAAAACAACAGTTTGAAAGAAAG-GCTACTC 718
||||||||| | ||||||||||||||||| ||||||||||| || || |||| |||| ||
Sbjct 654 TGACAATCCGTCAAACGAGAATGTTCGTCAAAAACAACAGTCTGTAA-AAAGAGCTAGTC 712
Query 719 GGCGGTGGAGAGTTAAGGAGAAGCCATTGCTCTTGAGGATGCTAATTGCTGCCTTCCCTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GGCGGTGGAGAGTTAAGGAGAAGCCATTGCTCTTGAGGATGCTAATTGCTGCCTTCCCTT 772
Query 779 TTTTGGGTTCATGGACCAAATTGTTGTTTTGA 810
||||||||||||||||||||||||||||||||
Sbjct 773 TTTTGGGTTCATGGACCAAATTGTTGTTTTGA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5