BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04320.1
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477692 jgi|Araly1|477692|fgenesh2_kg.3__393__AT3G04320.1 1153 0.0
Ahg927977 jgi|Araly1|927977|scaffold_300434.1 571 3e-162
> Ahg477692 jgi|Araly1|477692|fgenesh2_kg.3__393__AT3G04320.1
Length=752
Score = 1153 bits (624), Expect = 0.0
Identities = 712/755 (94%), Gaps = 4/755 (1%)
Strand=Plus/Plus
Query 17 ACACAAAGATGAAAACATTCCAATTGATGATGATCTCTTTCTTGTTCGTTGCAATAACAA 76
||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 1 ACAAAAAGATGAAAACATTCCGATTGATGATGATCTCTTTCTTGCTAGTTGCAATAACAA 60
Query 77 CAACATCCGGTGTGGTTAGTGAGGGTAACGACGTAGTTTATGACGGCGAAGGAGATCCGG 136
||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 61 CAACATCCGGTGTCGTTGGTGAGGGTAACGACGTGGTTTATGATGGCGAAGGAGACCCGG 120
Query 137 TTAAGCCCAACGTTCCATATTACATCAGCTTCATGACGTCGGATTACAACATGTGGATCT 196
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTAAGCCCAACGTTCCGTATTACATCAGCTTCATGACGTCGGATTACAACATGTGGATCT 180
Query 197 GCCGAATGCAATATGGATCTACTGATCCCAACTCATGCCCACAACAACCGTTAATGGTCA 256
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCGAAGGCAATATGGATCTACTGATCCCAACTCATGCCCACAACAACCGTTAATGGTCA 240
Query 257 CTCATCCAAATTTAGCAGCACCAACACCAGTTATGTTTGTATTAGCAAACAAGTCAGATG 316
|||||||| || | |||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 241 CTCATCCAGATATGGCAGCACCCACACCAGTTATGTTTGTATTAGCATCCAAATCAGATG 300
Query 317 TCGTACGTGAATCAGCCAAACTTAAGATTAAGTTCGTAGGTCCCCGTCAGTGTGGTAAAT 376
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 TCGTACGTGAATCAGCCAAACTTAAGATTAAGTTCGTAGGTCCCCGTCAGTGCGGTAAAT 360
Query 377 CCGGGTTTTGGAAAGTAGTTCAGAGAAACTCTTCAGAAGGTGAAGTATTCCTCAACGGAT 436
|||||||||||| ||| |||||||| ||||||| ||||||||||||| ||||||||||||
Sbjct 361 CCGGGTTTTGGAGAGTTGTTCAGAGGAACTCTTTAGAAGGTGAAGTAGTCCTCAACGGAT 420
Query 437 CTAAATCTATGTCACACAATGACAGCACATTCGCCATCCACAAAACTAACGAATACTACA 496
||||||||| |||| ||||||| || || ||||||||||| |||||||||||||||||||
Sbjct 421 CTAAATCTAAGTCAAACAATGATAGTACGTTCGCCATCCATAAAACTAACGAATACTACA 480
Query 497 AGTTTACTTTCGGTGACGGTGACTATCCAACGACTATCAGTATGACCAACGACTATCCGA 556
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGTTCACTTTCGGTGACGGTGACTATCCAACGACTATCAGTATGACCAACGACTATCCGA 540
Query 557 TATATAGGTTGTTATCGAAGAGGTTATCTGGAGAGATGGAGATTTATTTCTACAAGAACC 616
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATATAGGTTGTTATCAAAGCGGTTATCTGGAGAGATGGAGATTTATTTCTACAAGAACC 600
Query 617 TGACTACGAGTGAAGGCTAAAATGTTCTGTTTTCACTTACCTTTTTATATAATGTTTTCA 676
|||||||| ||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct 601 TGACTACGGGTGAAGGCTAA--TGTTCTGTTTTCACTTGCCTTTTTATGTAATGTTTTCA 658
Query 677 TTTCTAAAATCAAATAAAACTTGTTGTAATAACATGA-TAATCAAACAAACTAAACTCGG 735
||| |||||||||| |||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 659 TTTTTAAAATCAAACAAAACTTGTTGTAATAACATGAATAATCAAATAAACTAAACTCGG 718
Query 736 AGATCATAAAGTTGGTTCATCTATTGCGTATTCAT 770
||||||||| |||||||||||||||||||||||||
Sbjct 719 AGATCATAA-GTTGGTTCATCTATTGCGTATTCAT 752
> Ahg927977 jgi|Araly1|927977|scaffold_300434.1
Length=613
Score = 571 bits (309), Expect = 3e-162
Identities = 487/567 (86%), Gaps = 36/567 (6%)
Strand=Plus/Plus
Query 95 GTGAGGGTAACGACGTAGTTTATGACGGCGAAGGAGATCCGGTTAAGCCCAACGTTCCAT 154
||||||||||| |||| |||||||| || |||||||||| |||||||||||||||||| |
Sbjct 73 GTGAGGGTAACTACGTGGTTTATGATGGTGAAGGAGATCAGGTTAAGCCCAACGTTCCGT 132
Query 155 ATTACATCAGCTTCATGACGTCGGATTACAACATGTGGATCTGCCGAATGCAATATGGAT 214
| |||||||||||||||||||||||||||| ||||||||||||||||| | || || |
Sbjct 133 ACTACATCAGCTTCATGACGTCGGATTACAGCATGTGGATCTGCCGAAAG-AA-AT-G-- 187
Query 215 CTACTGATCCCAACTCATGCCCACAACAACCGTTAATGGTCACTCATCCAAATTTAGCAG 274
| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 188 -----G-----------TGCCCACAACAACCGTTAATGGTCACTCATCCAAATATAACAG 231
Query 275 CACCAACACCAGTTATGTTTGTATTAGCAAACA-AGTCAGAT---GTCGTACGTGAATCA 330
|||| ||||| ||||||||||||||| |||||| | |||||| |||||||||||||||
Sbjct 232 CACCCACACCGGTTATGTTTGTATTATCAAACACA-TCAGATACAGTCGTACGTGAATCA 290
Query 331 GCCAAACTTAAGATTAAGTTCGTAGGTCCCCGTCAGTGTGGTAAATCCGGGTTTTGGAAA 390
|||||||||||||||||||||||| ||| | |||||| ||| ||||||||||||||| |
Sbjct 291 ACCAAACTTAAGATTAAGTTCGTAGATCCTCTTCAGTGCGGTGAATCCGGGTTTTGGAGA 350
Query 391 GTAGTTCAGAGAAACTCTTCAGAAGGTGAAGTAT-TCCTCAACGGATCTAAATCTATGTC 449
||||||||||||||||||| |||||||||||| | |||||||||||||| |||||| |||
Sbjct 351 GTAGTTCAGAGAAACTCTTTAGAAGGTGAAGT-TGTCCTCAACGGATCTGAATCTACGTC 409
Query 450 ACACAATGACAGCACATTCGCCATCCA-CAAAACTAACGAATACTACAAGTTTACTTTCG 508
| |||||| ||| || ||| ||||| | | ||||| || ||||||||||||| |||||||
Sbjct 410 AGACAATGCCAGTACGTTCACCATCGAGC-AAACTGACCAATACTACAAGTTAACTTTCG 468
Query 509 GTGACGGTGACTATCCAACGACTATCAGTATGA-CCAACGAC---TATCCGATATATAGG 564
||||||||||||||| ||||||||||||| | | |||||||| ||||| |||||||||
Sbjct 469 GTGACGGTGACTATCTAACGACTATCAGT-TTATCCAACGACGATTATCCAATATATAGG 527
Query 565 TTGTTATCGAAGAGGTTATCTGGAGAGATGGAGATTTATTTCTACAAGAACCTGACTACG 624
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 528 TTGTTATCCAAGAGGTTCTCTGGAGAGATGGAGATTTATTTCTACAAGAACCTGACTATG 587
Query 625 AGTGAAGGCTAAAATGTTCTGTTTTCA 651
|| ||| | ||| ||||| |||||||
Sbjct 588 GGTTAAGCCGAAA-TGTTCCGTTTTCA 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32251987782
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5