BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04330.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477692 jgi|Araly1|477692|fgenesh2_kg.3__393__AT3G04320.1 761 0.0
Ahg927977 jgi|Araly1|927977|scaffold_300434.1 691 0.0
> Ahg477692 jgi|Araly1|477692|fgenesh2_kg.3__393__AT3G04320.1
Length=752
Score = 761 bits (412), Expect = 0.0
Identities = 549/613 (90%), Gaps = 17/613 (3%)
Strand=Plus/Plus
Query 1 ATGAAAACATTCCGATCGATGTTGATCTCTCTCTTGCTCGTTGCAATAACAACAACATCC 60
|||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||
Sbjct 9 ATGAAAACATTCCGATTGATGATGATCTCTTTCTTGCTAGTTGCAATAACAACAACATCC 68
Query 61 -G-GT-GTTGTTGAGGGTAACTACGTGGTTTATGACGGCGAAGGAGATCAGGTTAAGCCC 117
| || |||| |||||||||| ||||||||||||| ||||||||||| | ||||||||||
Sbjct 69 GGTGTCGTTGGTGAGGGTAACGACGTGGTTTATGATGGCGAAGGAGACCCGGTTAAGCCC 128
Query 118 AACGTTCCGTACTACATCAGCTTCATGACGTCGGATTACAACATGTGGATCTGCCGAAAG 177
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 129 AACGTTCCGTATTACATCAGCTTCATGACGTCGGATTACAACATGTGGATCTGCCGAAGG 188
Query 178 -AA-ATGGAGATCTAATGATCCCAACTCCTGCCCACAGCAACCGTTAATGGTCACTCATC 235
|| ||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 189 CAATATGGA--TCTACTGATCCCAACTCATGCCCACAACAACCGTTAATGGTCACTCATC 246
Query 236 CAAATATGGCAGCACCCACACCGGTTATGTTTGTGTTATCAAACAAATCAGAGACAGTCG 295
|| ||||||||||||||||||| ||||||||||| ||| || ||||||||| ||||
Sbjct 247 CAGATATGGCAGCACCCACACCAGTTATGTTTGTATTAGCATCCAAATCAGAT---GTCG 303
Query 296 TACGTGAATCAGCCAAACTCAAGATTAAGTTCGTAGATCCCCGTCCCTGCGGTGAATCCG 355
||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||
Sbjct 304 TACGTGAATCAGCCAAACTTAAGATTAAGTTCGTAGGTCCCCGTCAGTGCGGTAAATCCG 363
Query 356 GGTTTTGGAGAGTAGTTCAGAG-AACTTCTTCAGAAGGTGAAGTAGTCCTCAACGGATCT 414
||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 364 GGTTTTGGAGAGTTGTTCAGAGGAACT-CTTTAGAAGGTGAAGTAGTCCTCAACGGATCT 422
Query 415 GAATCTACGTCAGACAATGCCAGTACGTTCGCCATCGAGCAAACTAACGAATACTACAAG 474
|||||| |||| |||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 423 AAATCTAAGTCAAACAATGATAGTACGTTCGCCATCCATAAAACTAACGAATACTACAAG 482
Query 475 TTCACTTTCGGTGACGGCCCTGACTATCTAACGACTATCAGTTT-ATCCAACGATTATCC 533
||||||||||||||||| |||||||| ||||||||||||| | | ||||||| |||||
Sbjct 483 TTCACTTTCGGTGACGG---TGACTATCCAACGACTATCAGTATGA-CCAACGACTATCC 538
Query 534 AATATATAGGTTGTTATCCAAGAAGTTCTCTGGAGAAATGGAGATTTATTTCTACAAGAA 593
||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||
Sbjct 539 GATATATAGGTTGTTATCAAAGCGGTTATCTGGAGAGATGGAGATTTATTTCTACAAGAA 598
Query 594 CCTTACTATGGGT 606
||| |||| ||||
Sbjct 599 CCTGACTACGGGT 611
> Ahg927977 jgi|Araly1|927977|scaffold_300434.1
Length=613
Score = 691 bits (374), Expect = 0.0
Identities = 493/545 (90%), Gaps = 29/545 (5%)
Strand=Plus/Plus
Query 69 TGAGGGTAACTACGTGGTTTATGACGGCGAAGGAGATCAGGTTAAGCCCAACGTTCCGTA 128
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 74 TGAGGGTAACTACGTGGTTTATGATGGTGAAGGAGATCAGGTTAAGCCCAACGTTCCGTA 133
Query 129 CTACATCAGCTTCATGACGTCGGATTACAACATGTGGATCTGCCGAAAGAAATGGAGATC 188
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 134 CTACATCAGCTTCATGACGTCGGATTACAGCATGTGGATCTGCCGAAAGAAAT-G-G--- 188
Query 189 TAATGATCCCAACTCCTGCCCACAGCAACCGTTAATGGTCACTCATCCAAATATGGCAGC 248
|| ||| | || | ||||||||||||||||||||||||||||| ||||
Sbjct 189 ---TG--CCC-A--------CA-A-CAACCGTTAATGGTCACTCATCCAAATATAACAGC 232
Query 249 ACCCACACCGGTTATGTTTGTGTTATCAAACAAATCAGAGACAGTCGTACGTGAATCAGC 308
||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| |
Sbjct 233 ACCCACACCGGTTATGTTTGTATTATCAAACACATCAGATACAGTCGTACGTGAATCAAC 292
Query 309 CAAACTCAAGATTAAGTTCGTAGATCCCCGTCCCTGCGGTGAATCCGGGTTTTGGAGAGT 368
|||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 293 CAAACTTAAGATTAAGTTCGTAGATCCTCTTCAGTGCGGTGAATCCGGGTTTTGGAGAGT 352
Query 369 AGTTCAGAG-AACTTCTTCAGAAGGTGAAGTAGTCCTCAACGGATCTGAATCTACGTCAG 427
||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 353 AGTTCAGAGAAAC-TCTTTAGAAGGTGAAGTTGTCCTCAACGGATCTGAATCTACGTCAG 411
Query 428 ACAATGCCAGTACGTTCGCCATCGAGCAAACTAACGAATACTACAAGTTCACTTTCGGTG 487
||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||
Sbjct 412 ACAATGCCAGTACGTTCACCATCGAGCAAACTGACCAATACTACAAGTTAACTTTCGGTG 471
Query 488 ACGGCCCTGACTATCTAACGACTATCAGTTTATCCAACGA---TTATCCAATATATAGGT 544
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 472 ACGG---TGACTATCTAACGACTATCAGTTTATCCAACGACGATTATCCAATATATAGGT 528
Query 545 TGTTATCCAAGAAGTTCTCTGGAGAAATGGAGATTTATTTCTACAAGAACCTTACTATGG 604
|||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 529 TGTTATCCAAGAGGTTCTCTGGAGAGATGGAGATTTATTTCTACAAGAACCTGACTATGG 588
Query 605 GTTAA 609
|||||
Sbjct 589 GTTAA 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5