BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04340.1
Length=4106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903252 jgi|Araly1|903252|Al_scaffold_0003_380 6174 0.0
> Ahg903252 jgi|Araly1|903252|Al_scaffold_0003_380
Length=3885
Score = 6174 bits (3343), Expect = 0.0
Identities = 3670/3827 (96%), Gaps = 25/3827 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTCATTTCCGCTTCTTCCTTATCTTCACCCTTTTC-CACACAGTTGTCTCCGAT 59
|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| |
Sbjct 1 ATGGATTTCATTTCCGCTTCTTCCATATCTTCACCC-TTTCTCACACAGTTGTCTCCGCT 59
Query 60 TTATTTGAGCTCAGGTATAGTATCGTTAAAGCCTAGACATCGAGTCAAAAATCGAAACTT 119
|| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 60 TTCTTTGAGCTCAGGTATAGTATCGTTAAAGCCTAGATATCGGGTCAAAAAACGAAACTT 119
Query 120 TGGGTCTAGAGAATCCAATAATAAATCTAGGAAAATTGTGCCCATTAGAGGCTGCTTT-G 178
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 120 TGGGTCTAGAGAATCC---AATAAATCTAGGAAATTTGTGCCCATTAGAGGCTGCTTTGG 176
Query 179 GTTTTTC--C------GGGAGTTTTTTGAGGTCGAAACAGTCTGATTACGGTAGTGAAGC 230
||||| | | ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 177 GTTTTCCGGCGTAAATGGGAGTTTTTTGAGGTCGAAACAGTCTGATTACGGGAATGAAGC 236
Query 231 TGTTTCGGAATCATTGAGATTATGTGGAGAGGGAAATGAGCTTGTGCTATCTTCCGAGTA 290
||||||||||||||||||| || |||||||||||||||||||||||| ||| || | |||
Sbjct 237 TGTTTCGGAATCATTGAGAGTAAGTGGAGAGGGAAATGAGCTTGTGCCATCGTCTGTGTA 296
Query 291 TAATAGCGCAAAGACGAGAGAGAGCGTAATACAGTTTGT-TACCAAGCCTCTAGTTTACG 349
| | | ||||||||||||||||||||||||||||||||| | | |||||| |||||||||
Sbjct 297 T-A-A-CGCAAAGACGAGAGAGAGCGTAATACAGTTTGTGT-CAAAGCCTTTAGTTTACG 352
Query 350 CCTTGTTTTGTATTGCAATTGGACTTTCTCCGATTCGCTCTTTTCAAGCTCCAGCTTTAG 409
||| ||||||||||||||||| |||| || |||| |||||||||||||||||||||||
Sbjct 353 TCTTATTTTGTATTGCAATTGGGTTTTCGCCAATTCACTCTTTTCAAGCTCCAGCTTTAG 412
Query 410 CTGTGCCTTTCGTCAGTGATGTTATTTGgaagaaaaagaaagagagagtgagagagaaag 469
|||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||
Sbjct 413 CTGTGCCTTTCGTCAGTGATGTGATTTGGAAGAAAAAGAAAGAGACAGTGAAAGATAAAG 472
Query 470 agGTGGTTTTGAAAGCAGTTGATCATGAGTTCTCGGATTATACTCGGAGATTGTTGGAGA 529
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 473 AGGTGGTTTTGAAAGCAGTTGATCATGAGTTCTCGGATTATACACGGAGATTGTTGGAGA 532
Query 530 CAGTCTCGGTTTTACTGAAGACTATTGAGATA-GTTAGAAAGGAAAATGGAGAGGTTGCT 588
|||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||
Sbjct 533 CAGTCTCGGTTTTACTGAAGACTATTGACA-AGGTTAGAAAGGAAAATGGAGATGTTGCT 591
Query 589 GAAGTGGGAGCGGCTTTGGATGCAGTTAAGGTGGAGAAGGAGAAACTGCAGAAGGAGATA 648
||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 592 GAAGTGGGAACGGCTTTGGATGCAGTAAAGGTGGAGAAGGAGAAACTGCAGAAAGAGATA 651
Query 649 ATGAGTGGGTTATATCGTGATATGAGGCGGTTGAGGAAGGAGAGAGATTTGTTAATGAAA 708
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 652 ATGAGTGGATTATATCGTGATATGAGGCGGTTGAGGAAGGAGAGAGATGTGTTAATGAAA 711
Query 709 CGAGCTGATAAAATTGTAGATGAGGCCCTAAGTTTGAAGAAACAGAGTGAAAAACTGTTG 768
||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 712 CGAGCTGATGGGATTGTAGATGAGGCCCTAAGATTGAAGAAAGAGAGTGAAAAACTGTTG 771
Query 769 AGAAAAGGTGCTAGGGAGAAAATGGAGAAACTGGAAGAGAGTGTGGATATTATGGAGAGC 828
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 772 AGAAAAGGTGCTAGGGAGAAAGTGGAGAAACTGGAAGAGAGTGTGGATATAATGGAGAGT 831
Query 829 GAGTACAATAAGATATGGGAAAGAATAGATGAGATTGATGATATCATTTTAAAGAAAGAG 888
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 832 GATTACAACAAGATGTGGGAAAGAATAGATGAGATTGATGATATCATTTTAAATAAAGAG 891
Query 889 ACAACAACATTGAGTTTTGGGGTTAGGGAGCTTATTTTCATTGAAAGAGAGTGTGTAGAG 948
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 892 ACAACAACATTGAGTTTTGGGGTTAGGGAGCTTATTTTCATCGAAAGAGAGTGTGTGGAG 951
Query 949 TTGGTTAAGAGCTTCAACCGAGAATTGAATCAAAAAAGTTTTGAAAGTGTTCCTGAAAGC 1008
|||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||
Sbjct 952 TTGGTTAAGAGCTTCAACAGAGAAACGAATCAAAAAAGTTCTGAAAGTGCTCCTGAAAGC 1011
Query 1009 TCCATTACAAAACTCTCGAGGTCTGAGATTAAGCAGGAATTAGTGAACGCTCAAAGAAAG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TCCATTACAAAACTCTCGAGGTCTGAGATTAAGCAGGAATTAGTGAACGCTCAAAGAAAG 1071
Query 1069 CACTTGGAACAAATGATACTGCCCAATGTTTTGGAACTAGAGGAGGTTGATCCCTTTTTC 1128
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1072 CACTTGGAACAAATGATACTGCCTAATGTTTTGGAACTAGAGGAGGTTGATCCCTTTTTC 1131
Query 1129 GATCGTGACTCAGTGGATTTTTCTCTACGCATCAAAAAACGCCTTGAGGAATCAAAAAAG 1188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AATCGTGACTCAGTGGATTTTTCTCTACGCATCAAAAAACGCCTTGAGGAATCAAAAAAG 1191
Query 1189 CTGCAGAGAGATCTTCAGAATCGTATCAGAAAACGTATGAAAAAGTTTGGTGAAGAAAAG 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CTGCAGAGAGATCTTCAGAATCGTATCAGAAAACGTATGAAAAAGTTTGGTGAAGAAAAG 1251
Query 1249 CTTTTTGTTCAAAAGACTCCAGAAGGTGAAGCTGTCAAGGGATTTCCTGAAGCAGAGGTG 1308
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1252 CTTTTTGTTCAAAAGACTCCAGAAGGTGAAGCTGTCAAAGGATTTCCTGAAGCCGAGGTG 1311
Query 1309 AAATGGATGTTTGGAGAGAAAGAGGTGGTTGTTCCGAAAGCTATCCAGCTCCATCTACGC 1368
||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct 1312 AAATGGATGTTTGGAGACAAGGAGGTGGTCGTTCCGAAAGCCATCCAGCTCCATCTACGC 1371
Query 1369 CATGGTTGGAAAAAGTGGCAGGAAGAAGCAAAAGCCGATTTAAAACAGAAACTTTTGGAA 1428
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1372 CATGGTTGGAAAAAGTGGCAGGAAGAAGCAAAAGCCGATTTGAAACAGAAACTTTTGGAA 1431
Query 1429 GATGTTGATTTTGGCAAACAATATATTGCGCAGAGACAGGAACAAGTTCTCCTGGATCGA 1488
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GATGTTGATTTTGGTAAACAATATATTGCGCAGAGACAGGAACAAGTTCTCCTGGATCGA 1491
Query 1489 GATAGAGTTGTTTCGAAGACTTGGTATAACGAAGACAAAAGTAGGTGGGAGATGGACCCT 1548
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1492 GATAGAGTTGTTTCAAAGACATGGTATAACGAAGACAAAAATAGGTGGGAGATGGACCCT 1551
Query 1549 ATGGCTGTTCCCTACGCAGTTTCCAGGAAGCTGATTGACAGTGCCAGGATTAGGCATGAT 1608
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 ATGGCTGTTCCATATGCAGTTTCCAGGAAGCTGATTGACAGTGCCAGGATTAGGCATGAT 1611
Query 1609 TATGCTGTAATGTATGTTGCATTAAAAGGAGATGACAAGGAGTTTTACGTTGATATCAAG 1668
||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||
Sbjct 1612 TATGCTGTAATGTATGTTGCATTAAAAGGAGATGACAAGGAGTATCACATTGACATCAAG 1671
Query 1669 GAATATGAGATGCTATTTGAGAAATTTGGAGGGTTTGATGCTCTGTACCTCAAAATGCTT 1728
||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 1672 GAATATGAGATGCTATTTGAGAAGTTTGGAGGCTTTGATGCTCTATACCTTAAAATGCTT 1731
Query 1729 GCTTGTGGAATCCCAACTTCTGTTCATCTGATGTGGATACCCATGTCAGAGCTAAGTCTT 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 GCTTGTGGAATCCCAACTTCTGTTCATCTGATGTGGATACCCATGTCAGAGCTAAGTCTT 1791
Query 1789 CAACAACAGTTTCTGTTGGTTACAAGGGTGGTTTCTCGAGTCTTTAACGCATTGAGGAAG 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 CAACAACAGTTTCTGTTGGTTACAAGGGTGGTTTCTCGAGTCTTTAACGCATTGAGGAAG 1851
Query 1849 ACTCAAGTTGTATCAAATGCGAAGGATACAGTATTAGAGAAAATA-AGGAATATAAACGA 1907
||||||||||||||||||||||||||||| ||| |||||| |||| || |||||||||||
Sbjct 1852 ACTCAAGTTGTATCAAATGCGAAGGATACTGTAATAGAGAGAATACAG-AATATAAACGA 1910
Query 1908 TGACATTATGATGGCGGTTGTGTTTCCAGTTATCGAATTTATCATTCCTTACCAGTTAAG 1967
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 TGACATTATGATGGCGGTCGTGTTTCCAGTTATCGAATTTATCATTCCTTACCAGTTAAG 1970
Query 1968 GCTGCGTCTGGGAATGGCTTGGCCAGAAGAAATAGAACAGACTGTTGGCTCAACATGGTA 2027
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1971 GCTGCGTCTGGGAATGGCTTGGCCGGAAGAAATAGAACAGACTGTTGGCTCAACATGGTA 2030
Query 2028 CTTACAATGGCAGTCTGAAGCAGAAATGAATTTCAAGTCCCGCAATACAGAAGATTTTCA 2087
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 2031 CTTACAATGGCAGTCTGAAGCAGAGATGAACTTCAAGTCCCGCAATACAGAAGATTTTAA 2090
Query 2088 GTGGTTCCTCTGGTTTCTAATTCGAAGTTCTATATACGGGTTTGTTTTGTATCACGTTTT 2147
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2091 GTGGTTCCTCTGGTTTCTAATTCGAAGTTCTATATACGGGTTTGTTTTGTATCATGTTTT 2150
Query 2148 CCGCTTTCTAAAAAGAAAGGTTCCAAGACTTCTTGGCTATGGACCCTTCCGCCGAGATCC 2207
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 CCGCTTTCTGAAAAGAAAGGTTCCAAGACTTCTTGGCTATGGACCCTTCCGCCGAGATCC 2210
Query 2208 CAACGTACGGAAATTCTGGAGAGTGAAATCATATTTCACTTATAGAAAAAGGAGAATCAA 2267
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2211 AAACGTACGGAAATTCTGGAGAGTGAAATCATATTTTACTTATAGAAAAAGGAGAATCAA 2270
Query 2268 ACAAAAGAGAAAGGCTGGAATCGACCCCATAAAAACTGCATTCGACAGAATGAAGAGAGT 2327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2271 ACAAAAGAGAAAGGCTGGAATCGACCCCATAAAAACTGCATTCGACAGAATGAAGAGAGT 2330
Query 2328 GAAAAATCCACCTATCCCATTAAAGAACTTTGCTAGTATTGAGTCTATGAGAGAAGAAAT 2387
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2331 GAAAAATCCACCAATCCCATTAAAAAACTTTGCTAGTATTGAGTCTATGAGAGAAGAAAT 2390
Query 2388 CAACGAGGTTGTGGCATTTTTACAGAATCCAAAGGCATTTCAGGAGATGGGAGCCCGCGC 2447
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 2391 CAATGAGGTTGTAGCATTTTTACAGAATCCAAAGGCATTTCAGGAGATGGGTGCCAGAGC 2450
Query 2448 ACCTCGGGGCGTTCTTATTGTGGGTGAGAGAGGAACGGGAAAGACGTCACTGGCGCTCGC 2507
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2451 ACCTCGGGGAGTTCTTATTGTGGGTGAGAGAGGAACGGGAAAGACGTCACTGGCGCTCGC 2510
Query 2508 TATAGCAGCCGAAGCAAGAGTGCCTGTTGTCAATGTTGAAGCTCAAGAGTTGGAAGCTGG 2567
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2511 TATAGCAGCCGAAGCAAGAGTGCCTGTTGTTAATGTTGAAGCTCAAGAGTTGGAAGCTGG 2570
Query 2568 GCTATGGGTTGGTCAAAGTGCAGCGAATGTCAGGGAACTCTTTCAAACTGCAAGAGACTT 2627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2571 ACTATGGGTTGGTCAAAGTGCAGCGAATGTCAGGGAACTCTTTCAAACTGCAAGAGACTT 2630
Query 2628 GGCACCTGTAATCATTTTTGTGGAGGATTTTGACCTCTTTGCTGGTGTACGCGGGAAGTT 2687
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2631 GGCACCTGTTATCATTTTTGTGGAGGATTTTGACCTCTTTGCCGGTGTACGCGGGAAGTT 2690
Query 2688 TGTACATACAAAACAGCAAGATCATGAATCGTTCATTAATCAGCTTCTTGTTGAACTTGA 2747
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2691 CGTACATACAAAACAGCAAGATCATGAATCGTTCATTAATCAGCTTCTTGTTGAACTTGA 2750
Query 2748 TGGCTTTGAGAAACAGGATGGCGTAGTTTTGATGGCGACGACACGAAATCATAAGCAAAT 2807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2751 TGGCTTTGAGAAACAGGATGGCGTAGTTTTGATGGCGACGACACGAAATCATAAGCAAAT 2810
Query 2808 TGATGAGGCGCTAAGAAGGCCAGGTCGTATGGATAGAGTATTCCATCTTCAAAGTCCAAC 2867
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2811 TGATGAGGCGTTAAGAAGGCCAGGTCGTATGGATAGAGTATTCCATCTTCAAAGTCCAAC 2870
Query 2868 TGAAATGGAAAGGGAGAGGATTTTACACAACGCTGCAGAAGAAACCATGGACCGAGAACT 2927
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2871 TGAAATGGAAAGGGAAAGGATTTTACACAACGCTGCAGAAGAAACCATGGACAGAGAACT 2930
Query 2928 CGTTGATCTAGTGGATTGGCGTAAGGTTTCAGAGAAGACAACTTTATTAAGACCGATAGA 2987
||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 2931 CGTTGATTTAGTGGATTGGCGTAAGGTTTCGGAGAAGACAACTTTATTACGACCGATAGA 2990
Query 2988 ACTGAAACTTGTTCCAATGGCTCTCGAAAGTAGTGCCTTCAGAAGCAAATTTCTGGACAC 3047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2991 ACTGAAACTTGTTCCAATGGCTCTCGAAAGTAGTGCCTTCAGAAGCAAATTTCTGGACAC 3050
Query 3048 TGACGAACTTCTGAGTTACGTTAGCTGGTTTGCGACGTTTAGCCATATAGTGCCCCCATG 3107
|||||||||||||||||| ||||||||||||||||||||||||| | |||||||| ||||
Sbjct 3051 TGACGAACTTCTGAGTTATGTTAGCTGGTTTGCGACGTTTAGCCGTGTAGTGCCCTCATG 3110
Query 3108 GCTGCGAAAAACTAAAGTTGCAAAGACAATGGGCAAAATGCTTGTGAATCATCTTGGACT 3167
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3111 GCTGCGGAAAACTAAAGTTGCAAAGACAATGGGCAAAATGCTTGTGAATCATCTTGGACT 3170
Query 3168 TAACTTAACCAAAGATGATTTGGAGAATGTGGTTGATCTGATGGAACCATATGGACAAAT 3227
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3171 CAACTTAACCAAAGAAGATTTGGAGAATGTGGTTGATCTGATGGAACCATATGGACAAAT 3230
Query 3228 AAGTAATGGAATAGAACTTTTGAATCCTACTGTTGATTGGACGAGGGAGACAAAGTTCCC 3287
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3231 AAGCAATGGAATAGAACTTTTGAATCCTCCTGTTGATTGGACGAGGGAGACAAAGTTCCC 3290
Query 3288 ACATGCTGTCTGGGCGGCTGGTCGTGCTCTCATCACACTTCTAATACCAAACTTTGATGT 3347
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3291 ACATGCTGTCTGGGCGGCTGGTCGTGCTCTCATCACACTTCTAATACCAAACTTCGATGT 3350
Query 3348 TGTGGAAAATCTTTGGCTTGAGCCTAGTTCCTGGGAAGGAATTGGGTGTACAAAAATCAC 3407
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3351 TGTGGAAAATCTTTGGCTTGAGCCTAGTTCCTGGGAGGGAATTGGGTGTACAAAAATCAC 3410
Query 3408 CAAGGTCACAAGTGGAGGCTCCGCGATTGGGAACACGGAATCAAGATCATATCTTGAAAA 3467
||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct 3411 CAAGGTCACAAGTGGAGGCTCTGCGATTGGGAATACAGAATCAAGATCGTATCTTGAAAA 3470
Query 3468 GAAGCTCGTTTTCTGCTTTGGATCTCACATTGCATCCCAAATGCTTCTTCCTCCCGGAGA 3527
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 3471 GAAGCTCGTTTTCTGCTTTGGATCCCACATTGCATCCCAAATGCTTCTCCCTCCCGGAGA 3530
Query 3528 TGAAAATTTTCTTTCTTCTTCAGAAATAACTAAAGCGCAGGAGATTGCAACACGTATGGT 3587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3531 TGAAAATTTTCTTTCTTCTTCAGAAATAACTAAAGCGCAGGAGATTGCAACACGTATGGT 3590
Query 3588 GCTTCAATATGGCTGGGGACCCGATGACAGTCCTGCAGTATACTATGCTACTAACGCGGT 3647
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3591 GCTTCAATATGGCTGGGGACCCGACGACAGTCCTGCAGTATACTATGCTACTAACGCGGT 3650
Query 3648 TTCAGCTTTGAGTATGGGGAACAATCACGAATATGAAATGGCGGGTAAAGTTGAAAAGAT 3707
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3651 TTCAGCTTTGAGTATGGGGAACATTCACGAATATGAAATGGCGGGTAAAGTTGAAAAGAT 3710
Query 3708 TTATGACTTAGCGTACGAAAAGGCAAAGGGAATGCTCCTTAAAAATCGAC-GTGTCCTTG 3766
|||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 3711 TTATGACTTAGCGTACGAAAAGGCAAAGGGAATGCTACTTAAAAATCG-CTGTGTCCTTG 3769
Query 3767 AGAAAATCACAGAGGAGCTACTCGAATTTGAGATTTTAACTCATAAG 3813
|||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 3770 AGAAAATCACAGAGGAGCTACTCGAATTTGAGATCTTAACTCAGAAG 3816
Score = 121 bits (65), Expect = 5e-26
Identities = 67/68 (99%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 3896 CATTGTCAAGGAGTTTTCTTGATGTTGGAGATCCGCCAGAAACTGCACTTCTTAGTGCAC 3955
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3818 CATTGTCAAGGAGTTTTCTTGATGTTGGAGATCCGCCAGAGACTGCACTTCTTAGTGCAC 3877
Query 3956 CAACCTAA 3963
||||||||
Sbjct 3878 CAACCTAA 3885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 155236840267
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5