BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04350.1
Length=2256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477694 jgi|Araly1|477694|fgenesh2_kg.3__395__AT3G04350.1 3284 0.0
Ahg904610 jgi|Araly1|904610|Al_scaffold_0003_1738 276 6e-73
> Ahg477694 jgi|Araly1|477694|fgenesh2_kg.3__395__AT3G04350.1
Length=2219
Score = 3284 bits (1778), Expect = 0.0
Identities = 2028/2148 (94%), Gaps = 20/2148 (1%)
Strand=Plus/Plus
Query 1 TCAACCTTCTCCTCTTTCTTACGCAATTACAACTTCAACGCCTCT--CTATCTC--TTCG 56
||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 1 TCAACCTTCTCCTCTTTCTTACGCAATTACAACTTCAACGCCTCTCCCTCTCTCTGTTCG 60
Query 57 CCGTGAATGTCGAGATAGTCGTAAGCTCTCTGCTTTTCAAATTTCTCTCAAATTGAGGTa 116
| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||
Sbjct 61 CTGTGAATGTCGAGATAGTCATAAGCTCTCTGC-TTTCAAATTTCTTTCAAATTGAGGTA 119
Query 117 gagagag-agggcacagagatagagagagagGGGCATAGGAAACGGTGATTTTCCCAGTT 175
|||||| ||||||||||||||||||| ||| ||||| |||||| |||||||||||||||
Sbjct 120 TAGAGAGAAGGGCACAGAGATAGAGAGCGAGAGGCATTGGAAACAGTGATTTTCCCAGTT 179
Query 176 CCCGGAGGAACAATCGGCTGATTTCTCTGTAATCGAAGAATCTAAACCTCACCCACTCGA 235
||||||| |||||||||||||||||||| ||||| ||||||| ||||| ||||||||||
Sbjct 180 CCCGGAGAAACAATCGGCTGATTTCTCTACAATCGGAGAATCTGAACCTTACCCACTCGA 239
Query 236 AATCAGCTCGTGGGTTTTGGGGGGTCTCTATTAATT-TCCAAATTCTGGAGAAAAATCTT 294
| |||||||||||||||||| |||| | ||| |||| |||| ||||||||||||||||||
Sbjct 240 ATTCAGCTCGTGGGTTTTGGTGGGTTTTTATCAATTGTCCAGATTCTGGAGAAAAATCTT 299
Query 295 GTATTTCT-TCAAGATGTTTGGGTGTGATTGTTTTTACTGGAGCAGAGGAATCTCCGAGT 353
| |||| | ||||||||||||||||||||||||||||| ||||||||||| |||| | ||
Sbjct 300 GAATTT-TATCAAGATGTTTGGGTGTGATTGTTTTTACCGGAGCAGAGGACTCTCTGTGT 358
Query 354 TGGATTCGGAATCGTCCGAGCCAAAGCCCTTCTCACTTCCGGCTCCTCTTCCTAGTTGGC 413
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 359 TGGATTCGGAATCGTCTGAGCCAAAGCCCTTCTCGCTTCCATCTCCTCTTCCTAGTTGGC 418
Query 414 CGCAAGGTAAAGGTTTTGCCACAGGAAGAATTAGCCTAGGAGAAATAGAAGTGGTGAAAA 473
| |||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||
Sbjct 419 CACAAGGTAAAGGTTTTGCCACGGGAAGAATAAACTTAGGAGAAATAGAAGTGGTGAAAA 478
Query 474 TCACCAAGTTCCATCGAGTTTGGAGCTCTGATTCATCACACGACAAATCAAAACGTGCTA 533
|||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||| |
Sbjct 479 TCACCAAGTTCCATAGAGTTTGGAGCTCTGATTCATCGCACGGCAAATCAAAATGTGCAA 538
Query 534 CATTTTACAGAGCCGATGACATTCCAGAAGGATTCCATTGCCTTGGTCACTATTGCCAGC 593
|||||||||||||||| || ||||||||||| ||||||||| |||||||||||||||| |
Sbjct 539 CATTTTACAGAGCCGAGGAAATTCCAGAAGGTTTCCATTGCTTTGGTCACTATTGCCAAC 598
Query 594 CAACCGATCAGCCCTTGAGAGGTTATGTACTTGCAGCTCGGACTAGCAAAGCCGTCAATG 653
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 CAACCGATCAGCCCTTGAGAGGTTATGTACTTGCAGCTCGGTCTAGCAAAGCCGTCAATG 658
Query 654 CTGATGATTTCCCGCCCTTGAAAAAGCCTGTGAGTTATTCTTTAGTTTGGAGTGCAGATT 713
|||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTGATGATCTCCCACCCCTGAAAAAGCCTGTGAGTTATTCTTTAGTTTGGAGTGCAGATT 718
Query 714 CAGAGAAAAATGGTGGTGGTTATTTCTGGCTACCTAATCCTCCGGTTGGTTACAGAGCAA 773
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAGAGAAAAATGGCAGTGGCTATTTCTGGCTACCTAATCCTCCGGTTGGTTACAGAGCAA 778
Query 774 TGGGAGTTATTGTAACCCATGAACCAGGTGAACCTGAAACAGAGGAGGTCAGATGTGTAA 833
|||||||||||||||||| || |||||||||||||||| |||||||||| ||||||||||
Sbjct 779 TGGGAGTTATTGTAACCCCTGGACCAGGTGAACCTGAACCAGAGGAGGTTAGATGTGTAA 838
Query 834 GAGAGGATCTTACAGAGAGTTGTGAAACCTCTGAGATGATACTTGAGGTGGGTTCTTCGA 893
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAGAGGATCTCACAGAGAGTTGTGAAACCTCTGAGATGATACTTGAGGTGGGTTCTTCGA 898
Query 894 AGAAGTCGAACGGCTCTAGTTCTCCTTTTAGTGTATGGAGCACCCGACCTTGCGAGAGAG 953
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 AGAATTCGAACGGCTCTAGTTCTCCTTTTAGTGTGTGGAGCACCCGACCTTGCGAGAGAG 958
Query 954 GGATGCTGTCACAAGGTGTCGCTGTTGGGTCATTCTTTTGCTGCACGTATGATCTGTCGT 1013
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 959 GGATGCTGTCACAAGGTGTAGCTGTTGGGTCATTCTTTTGCTGCACTTATGATCTGTCTT 1018
Query 1014 CTGAGAGGACGGTCCCTGATATCGGATGCTTAAAGAATCTTGATCCGACCTTACACGCGA 1073
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGATAGGACGGTCCCTGATATTGGATGCTTAAAGAATCTTGATCCGACCTTACACGCGA 1078
Query 1074 TGCCAAATCTCGACCAGGTCCATGCGGTTATCGAACACTTCGGACCAACAGTCTACTTCC 1133
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 TGCCAAATCTCGACCAGGTCCATGCGGTTATTGAACACTTCGGACCAACAGTCTACTTCC 1138
Query 1134 ACCCAGAAGAGGCTTACATGCCTTCATCTGTACAATGGTTCTTTAAGAATGGAGCTTTGT 1193
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 ACCCAGAAGAGGCTTACATGCCTTCATCCGTACAATGGTTCTTTAAGAATGGAGCTTTGT 1198
Query 1194 TGTACCGGTCAGGGAAATCAGAAGGTCAACCGATTAACTCCACGGGCTCGAACTTGCCTG 1253
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGTACCGGTCAGGGAAATCACAAGGTCAACCGATTAACTCCACGGGCTCGAACTTGCCTG 1258
Query 1254 CTGGAGGATGCAATGATATGGATTTCTGGATAGATCTTCCTGAAGACGAAGAAGCAAAGA 1313
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1259 CTGGAGGATGCAATGATATGGAATTCTGGATAGATCTTCCCGAAGACGAAGAAGCAAAGA 1318
Query 1314 GTAATCTCAAGAAAGGAAACCTTGAAAGCTCGGAGCTTTACGTTCATGTGAAACCAGCAC 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GTAATCTCAAGAAAGGAAACCTTGAAAGCTCGGAGCTTTACGTTCATGTGAAACCAGCAC 1378
Query 1374 TTGGTGGAA-CTTTCACCGACATCGTTATGTGGATTTTCTGCCCCTTTAATGGCCCAGCC 1432
||||||||| |||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1379 TTGGTGGAACCTTT-ACCGACATTGTGATGTGGATTTTCTGCCCCTTTAATGGCCCGGCC 1437
Query 1433 ACGCTCAAAATCGGCCTATTCACGTTACCTATGACCCGCATAGGAGAACATGTCGGTGAT 1492
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ACGCTCAAAATCGGGCTATTCACGTTACCTATGACCCGCATAGGAGAACATGTCGGTGAT 1497
Query 1493 TGGGAACATTTCACTTTCCGCATATGTAATTTCTCTGGTGAGCTTTGGCAAATGTTCTTT 1552
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1498 TGGGAACATTTCACTTTCCGCATATGCAACTTCTCTGGTGAGCTTTGGCAAATGTT-TTT 1556
Query 1553 -TCTCAGCATAGTGGTGGTGGTTGGGTTGATGCATCAGATATTGAGTTTGTGAAAGATAA 1611
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CTCTCAGCATAGTGGTGGTGGTTGGGTTGATGCATCAGATATTGAGTTTGTGAAAGATAA 1616
Query 1612 CAAACCGGCTGTGTACTCATCTAAACACGGACATGCGAGTTTCCCTCATCCAGGAATGTA 1671
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1617 CAAACCGGCTGTGTACTCATCTAAACACGGACATGCGAGTTTCCCTCACCCGGGAATGTA 1676
Query 1672 CCTCCAAGGCTCGTCAAAGCTCGGGATTGGAGTCAGAAACGATGTTGCAAAAAGCAAGTA 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CCTCCAAGGCTCGTCAAAGCTCGGGATTGGAGTCAGAAACGATGTTGCAAAAAGCAAGTA 1736
Query 1732 CATTGTGGATTCAAGCCAAAGGTATGTGATAGTAGCAGCTGAGTATTTAGGTAAAGGAGC 1791
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1737 CATTGTGGATTCAAGCCAAAGGTATGTGATTGTAGCAGCTGAGTATTTAGGTAAAGGAGC 1796
Query 1792 TGTGATAGAGCCGTGCTGGTTACAGTATATGAGAGAATGGGGTCCGACCATTGCATATGA 1851
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1797 TGTGATAGAGCCGTGCTGGTTACAGTATATGAGGGAATGGGGTCCGACCATTGCATATGA 1856
Query 1852 TTCAGGGTCTGAGATCAATAAGATCATGAATCTTCTTCCTTTGGTTGTTAGGTTCTCTAT 1911
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TTCGGGGTCTGAGATCAATAAGATCATGAATCTTCTTCCTTTGGTTGTTAGGTTCTCTAT 1916
Query 1912 TGAGAACATTGTTGATTTGTTTCCCATTGCTCTTTATGGAGAAGAAGGTCCCACAGGGCC 1971
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1917 TGAGAACATTGTTGATTTGTTTCCCATTGCTCTTTATGGAGAAGAAGGTCCTACGGGGCC 1976
Query 1972 AAAGGAGAAAGATAACTGGGAAGGAGATGAGATGTGCTGAAAGAAGACAAACCTCTTT-G 2030
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1977 AAAGGAGAAAGATAACTGGGAAGGAGATGAGATGTGCTGAAAGAAGACAAACCT-TTGCG 2035
Query 2031 TGATCAAGACGGTTTAATGGAAGATGAAGTCTCTTGTTGAATCGGAGGGTTTTGATCTC- 2089
||| || | |||||| ||| ||| ||||||||||||||| | ||| | |||| ||||
Sbjct 2036 TGAAGAATAAGGTTTAGTGGGAGACGAAGTCTCTTGTTGACGCAGAGAGATTTGGTCTCA 2095
Query 2090 TACTCTACTA-GTAATTGTGACTAATATGTAATTTACAGTATACTAGA 2136
| || | || || |||||||||||||||| ||||||||||||||||
Sbjct 2096 T-CTTTGTTACGTG-TTGTGACTAATATGTA-TTTACAGTATACTAGA 2140
> Ahg904610 jgi|Araly1|904610|Al_scaffold_0003_1738
Length=1020
Score = 276 bits (149), Expect = 6e-73
Identities = 209/236 (89%), Gaps = 12/236 (5%)
Strand=Plus/Plus
Query 1798 AGAGCCGTGCTGGTTACAGTATATGAGAGAATGGGGTCCGACCATTGCATATGATTCAGG 1857
||||| |||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 786 AGAGCTGTGCTGGTTAGAGCATATGAGAGAATGGGGTCCGACCATTGCTTATGATTCAGC 845
Query 1858 GTCTGAGATCAATAAGATCATGAATCTTCTTCCTTTGGTTGTTAGGTTCTCTATTGAGAA 1917
||||||||||||||||||||||||||||||||||||| ||||| |||| | |
Sbjct 846 GTCTGAGATCAATAAGATCATGAATCTTCTTCCTTTGCTTGTTGGGTT-T-T-------- 895
Query 1918 CATTGTTGATTTGTTTCCCATTGCTCTTTATGGAGAAGAAGGTCCCACAGGGCCAAAGGA 1977
||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 896 CATTGTTGATTTGTTTCTCATTGATCTTTATGGAGAAGAAGGTCACACGGGGCCAAAGGA 955
Query 1978 GAAAGATAACTGGGAAGGAGATGAGATGTGCTGAAAGAAGACAAACCTCTTTGTGA 2033
||| ||||||||||||||||||||| |||||||||||| || || ||||| |||||
Sbjct 956 GAAGGATAACTGGGAAGGAGATGAGTTGTGCTGAAAGA-GA-AAGCCTCTGTGTGA 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84941246350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5