BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04360.1
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477695 jgi|Araly1|477695|fgenesh2_kg.3__396__AT3G04360.1 2026 0.0
> Ahg477695 jgi|Araly1|477695|fgenesh2_kg.3__396__AT3G04360.1
Length=1291
Score = 2026 bits (1097), Expect = 0.0
Identities = 1233/1297 (95%), Gaps = 16/1297 (1%)
Strand=Plus/Plus
Query 1 AACTGATCGTATAATCATTCTCACGGAGACGAGTGACCAAAACAAGGTCTCCCGCTTCTT 60
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1 AACTGATCGTATAATCATTCTCACGAAGACGAGTGACCAAAAGAAGGTCTCCCGCTTCTT 60
Query 61 GCGAAGATTAAACGAATCCATTTAGATTTTAAAAACCACACaaaaaaaaTATGGGTCGGC 120
|||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 61 GCGAAGATTAGACGAATCCATTTAGATTTTAGAAACCACAC----AAAA-ATGGGTCGGC 115
Query 121 TCAAGTTCGCATGTCCGGTTCTTGAGATCAATTTAATCTCAGCTCAAGACTTAGCCCCTG 180
|||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 116 TCAAGTTCGCATGTCCCGTTCTTGAGATCAATCTAATCTCAGCTCAAGATTTAGCCCCTG 175
Query 181 TCTCAAGAAACATGAAAACGTATTCCGTCGCTTGGATCAACACCGATCCTATGAGAAAAC 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TTTCAAGAAACATGAAAACGTATTCCGTCGCTTGGATCAACACCGATCCTATGAGAAAAC 235
Query 241 TCACCACGCGTGTTGATCAATCCAACAGAGCTAACCCTATATGGAACGAGAAGTTTGTGT 300
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 236 TCACTACGCGTGTTGATCAATCCAATAGAGCTAACCCTATATGGAACGAGAAGTTTGTGT 295
Query 301 TTCGTGTCAACGACAAGATTCTCT-ACGTTGACGCATCAGCGATTGTGATTGAGATCTAC 359
||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 296 TTCGTGTTAACGACAAGATTCT-TGACGTTGACGCATCAGCGATTGTGATTGAGATTTAC 354
Query 360 GCAGCGGCTTGGGCTAAAGATGCTCTTGTTGGTACTGTGAATGTTCTTCTCAGCGATCTT 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 355 GCAGCGGCTTGGGCTAAAGATGCTCTTGTTGGTACTGTGAATGTTCTTCTTAGCGATCTT 414
Query 420 TTTGCTCCTTGGTCTGGTTTTGGTGATGGTAACGACGGTGGTGGTGGGAATAACAACATG 479
|||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |||
Sbjct 415 TTTGCTCCTTGGTCTGGTTTTGGTGATGGTGACGATGGTGGTGGTGGGAATAATAATATG 474
Query 480 AGGCTTGTGACTCTTCAGATTCGTCGTCCTTCAGGGAGGCTACAAGGGTTTTTACGTCTC 539
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 475 AGGCTTGTGACGCTTCAGATTCGTCGTCCTTCAGGGAGGCTTCAAGGGTTTTTACGGCTA 534
Query 540 GGTGTTGCACTTCTTGACGGTGGTCAACGGAGTATGCCTTTATCTATTGAGGTTTTCGAT 599
|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 535 GGTGTTGCTCTTCTCGACGGTGGTCAACGGAGTATGCCGTTATCTATTGAGGTTTTTGAT 594
Query 600 GGAAGTCGAAAAGGAGAGAGGAATAGTGTTAAAAGAGACCAAGAGGCTTCAAGAATGATG 659
|||||||||| |||||||| ||||||| ||||||||| ||||| |||||||| ||||||
Sbjct 595 GGAAGTCGAAGAGGAGAGACGAATAGTAATAAAAGAGATCAAGAAGCTTCAAGGATGATG 654
Query 660 CATCGCCGTACGAATAGCGATCAAACGGATTTAACCACGTCTACGAATGATTACGGTGTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 655 CATCGCCGTACGAATAGCGATCAAACGGATTTAACCACGTCTACGAATGATTATGGTGTG 714
Query 720 AAAACAGGGGTTGTTACTGGCAATGGAGGAGGAGGTGGTGGTGGTGGCGGTATTGTTGTT 779
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 715 AAAACAGGGGTTGTTACTGGCAATGGAGGAGGAGGAGGTGGTGGTGGTGGTATTGTTGTT 774
Query 780 GGTGCGGATAGTATGGTTAATGGTTCGCTTTGTAGCTCTGATATTGGACCATCAGCGTCT 839
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 775 GGTGCGGATAGTATGGTTAATGGTTCACTTTGTAGCTCTGATATTGGACCATCAGCGTCT 834
Query 840 GTGGTTGCGGCTGCGATTGCGCAAGGGCTTTACAATAGACAGAAAACAGCGGTTAAAGCG 899
|||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 835 GTGGTTGCGGCTGCAATTGCTCAGGGGCTTTACAATAGGCAGAAAACAGCGGTTAAAGCG 894
Query 900 GC------TAACAAAGAGGACGCAAGTTCGATACTTGAAGGGAAAACAGAGGGAATTGAG 953
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GCGAGTAGTAACAAAGAGGACGCAAGTTCGATACTTGAAGGGAAAACAGAGGGAATTGAG 954
Query 954 CATAGAGTTGAACGGTGGAGAGCAGAGAAAAATGGCACGGGTGGAGCGGGTGGAGCGGCT 1013
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 955 CATAGAGTTGAACGGTGGAGAGCAGAGAAAAATGGCACGGCTGGAGCGGGTGAAGCGGCT 1014
Query 1014 GGATCAAGCGATGATTCTAGCGggaaaggaggagcgggaaggagaagaaggag--g-agg 1070
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 1015 GGATCGAGCGATGATTCTAGCGGGAAAGGAGGAGCTGGAAGGAGAAGAAGGAGAAGAAGA 1074
Query 1071 agaagaaaggagaaacaacaagggaggagaaacggtggaggagagggtaagaaaggGTTG 1130
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1075 AGAAGAAAGGAGAAACAACAAGGGCGGAGAAACGGTGGAGGAGAAGGTAAGAAAGGGTTG 1134
Query 1131 TTTTCATGTTTTGGAAACGTGTTTGGATGTGAGATTTCGATAACATGTGGCGGTGGAAGC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TTTTCATGTTTTGGAAACGTGTTTGGATGTGAGATTTCGATAACATGTGGCGGTGGAAGC 1194
Query 1191 GGCGGAGAAGGAGACAGCACAAAGAAGAGATATAATAACAATAAAGTAGTAAATCTTAGT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGCGGAGAAGGAGACAGCACAAAGAAGAGATATAATAACAATAAAGTAGTAAATCTTAGT 1254
Query 1251 GCTGTAGACGAAACGTTTAGTCATTCTGCGACTTGAG 1287
||||||||||||||||||||||||||||| |||||||
Sbjct 1255 GCTGTAGACGAAACGTTTAGTCATTCTGCTACTTGAG 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48873579594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5