BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04360.1 Length=1307 Score E Sequences producing significant alignments: (Bits) Value Ahg477695 jgi|Araly1|477695|fgenesh2_kg.3__396__AT3G04360.1 2026 0.0 > Ahg477695 jgi|Araly1|477695|fgenesh2_kg.3__396__AT3G04360.1 Length=1291 Score = 2026 bits (1097), Expect = 0.0 Identities = 1233/1297 (95%), Gaps = 16/1297 (1%) Strand=Plus/Plus Query 1 AACTGATCGTATAATCATTCTCACGGAGACGAGTGACCAAAACAAGGTCTCCCGCTTCTT 60 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 1 AACTGATCGTATAATCATTCTCACGAAGACGAGTGACCAAAAGAAGGTCTCCCGCTTCTT 60 Query 61 GCGAAGATTAAACGAATCCATTTAGATTTTAAAAACCACACaaaaaaaaTATGGGTCGGC 120 |||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||| Sbjct 61 GCGAAGATTAGACGAATCCATTTAGATTTTAGAAACCACAC----AAAA-ATGGGTCGGC 115 Query 121 TCAAGTTCGCATGTCCGGTTCTTGAGATCAATTTAATCTCAGCTCAAGACTTAGCCCCTG 180 |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| Sbjct 116 TCAAGTTCGCATGTCCCGTTCTTGAGATCAATCTAATCTCAGCTCAAGATTTAGCCCCTG 175 Query 181 TCTCAAGAAACATGAAAACGTATTCCGTCGCTTGGATCAACACCGATCCTATGAGAAAAC 240 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 TTTCAAGAAACATGAAAACGTATTCCGTCGCTTGGATCAACACCGATCCTATGAGAAAAC 235 Query 241 TCACCACGCGTGTTGATCAATCCAACAGAGCTAACCCTATATGGAACGAGAAGTTTGTGT 300 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 236 TCACTACGCGTGTTGATCAATCCAATAGAGCTAACCCTATATGGAACGAGAAGTTTGTGT 295 Query 301 TTCGTGTCAACGACAAGATTCTCT-ACGTTGACGCATCAGCGATTGTGATTGAGATCTAC 359 ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||| Sbjct 296 TTCGTGTTAACGACAAGATTCT-TGACGTTGACGCATCAGCGATTGTGATTGAGATTTAC 354 Query 360 GCAGCGGCTTGGGCTAAAGATGCTCTTGTTGGTACTGTGAATGTTCTTCTCAGCGATCTT 419 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 355 GCAGCGGCTTGGGCTAAAGATGCTCTTGTTGGTACTGTGAATGTTCTTCTTAGCGATCTT 414 Query 420 TTTGCTCCTTGGTCTGGTTTTGGTGATGGTAACGACGGTGGTGGTGGGAATAACAACATG 479 |||||||||||||||||||||||||||||| |||| ||||||||||||||||| || ||| Sbjct 415 TTTGCTCCTTGGTCTGGTTTTGGTGATGGTGACGATGGTGGTGGTGGGAATAATAATATG 474 Query 480 AGGCTTGTGACTCTTCAGATTCGTCGTCCTTCAGGGAGGCTACAAGGGTTTTTACGTCTC 539 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 475 AGGCTTGTGACGCTTCAGATTCGTCGTCCTTCAGGGAGGCTTCAAGGGTTTTTACGGCTA 534 Query 540 GGTGTTGCACTTCTTGACGGTGGTCAACGGAGTATGCCTTTATCTATTGAGGTTTTCGAT 599 |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 535 GGTGTTGCTCTTCTCGACGGTGGTCAACGGAGTATGCCGTTATCTATTGAGGTTTTTGAT 594 Query 600 GGAAGTCGAAAAGGAGAGAGGAATAGTGTTAAAAGAGACCAAGAGGCTTCAAGAATGATG 659 |||||||||| |||||||| ||||||| ||||||||| ||||| |||||||| |||||| Sbjct 595 GGAAGTCGAAGAGGAGAGACGAATAGTAATAAAAGAGATCAAGAAGCTTCAAGGATGATG 654 Query 660 CATCGCCGTACGAATAGCGATCAAACGGATTTAACCACGTCTACGAATGATTACGGTGTG 719 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 655 CATCGCCGTACGAATAGCGATCAAACGGATTTAACCACGTCTACGAATGATTATGGTGTG 714 Query 720 AAAACAGGGGTTGTTACTGGCAATGGAGGAGGAGGTGGTGGTGGTGGCGGTATTGTTGTT 779 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 715 AAAACAGGGGTTGTTACTGGCAATGGAGGAGGAGGAGGTGGTGGTGGTGGTATTGTTGTT 774 Query 780 GGTGCGGATAGTATGGTTAATGGTTCGCTTTGTAGCTCTGATATTGGACCATCAGCGTCT 839 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 775 GGTGCGGATAGTATGGTTAATGGTTCACTTTGTAGCTCTGATATTGGACCATCAGCGTCT 834 Query 840 GTGGTTGCGGCTGCGATTGCGCAAGGGCTTTACAATAGACAGAAAACAGCGGTTAAAGCG 899 |||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||| Sbjct 835 GTGGTTGCGGCTGCAATTGCTCAGGGGCTTTACAATAGGCAGAAAACAGCGGTTAAAGCG 894 Query 900 GC------TAACAAAGAGGACGCAAGTTCGATACTTGAAGGGAAAACAGAGGGAATTGAG 953 || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 GCGAGTAGTAACAAAGAGGACGCAAGTTCGATACTTGAAGGGAAAACAGAGGGAATTGAG 954 Query 954 CATAGAGTTGAACGGTGGAGAGCAGAGAAAAATGGCACGGGTGGAGCGGGTGGAGCGGCT 1013 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 955 CATAGAGTTGAACGGTGGAGAGCAGAGAAAAATGGCACGGCTGGAGCGGGTGAAGCGGCT 1014 Query 1014 GGATCAAGCGATGATTCTAGCGggaaaggaggagcgggaaggagaagaaggag--g-agg 1070 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | || Sbjct 1015 GGATCGAGCGATGATTCTAGCGGGAAAGGAGGAGCTGGAAGGAGAAGAAGGAGAAGAAGA 1074 Query 1071 agaagaaaggagaaacaacaagggaggagaaacggtggaggagagggtaagaaaggGTTG 1130 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1075 AGAAGAAAGGAGAAACAACAAGGGCGGAGAAACGGTGGAGGAGAAGGTAAGAAAGGGTTG 1134 Query 1131 TTTTCATGTTTTGGAAACGTGTTTGGATGTGAGATTTCGATAACATGTGGCGGTGGAAGC 1190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 TTTTCATGTTTTGGAAACGTGTTTGGATGTGAGATTTCGATAACATGTGGCGGTGGAAGC 1194 Query 1191 GGCGGAGAAGGAGACAGCACAAAGAAGAGATATAATAACAATAAAGTAGTAAATCTTAGT 1250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1195 GGCGGAGAAGGAGACAGCACAAAGAAGAGATATAATAACAATAAAGTAGTAAATCTTAGT 1254 Query 1251 GCTGTAGACGAAACGTTTAGTCATTCTGCGACTTGAG 1287 ||||||||||||||||||||||||||||| ||||||| Sbjct 1255 GCTGTAGACGAAACGTTTAGTCATTCTGCTACTTGAG 1291 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48873579594 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5