BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04370.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477696 jgi|Araly1|477696|fgenesh2_kg.3__397__AT3G04370.2 1507 0.0
> Ahg477696 jgi|Araly1|477696|fgenesh2_kg.3__397__AT3G04370.2
Length=1035
Score = 1507 bits (816), Expect = 0.0
Identities = 974/1049 (93%), Gaps = 16/1049 (2%)
Strand=Plus/Plus
Query 1 CTCAAACATGGTTGTCCACTTGATCTCTCTCCTCACACAAACCCTAGCCCTAATCATTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCAAACATGGTTGTCCACTTGATCTCTCTCCTCACACAAACCCTAGCCCTAATCATTCT 60
Query 61 GTCTCTTCCCTCTATCATCAACACTTCTCAACTT-GATTACGACACTCTTGTTTTCAAAC 119
||||| |||||||||||||||||||| ||| || |||||||| ||||| ||||||||||
Sbjct 61 CTCTCTGCCCTCTATCATCAACACTTCCCAA-TTGGATTACGATACTCTAGTTTTCAAAC 119
Query 120 AATGCGATCCATTGGACGCAAACATCCTCCAAAAAGCAACAACAAAATCTCCAAATTACT 179
|||||||| |||||| | |||||||| ||| || || ||||| | ||||||||||
Sbjct 120 AATGCGATTCATTGGCCCCAAACATCTTCC---AA--AA-AACAAGA---CCAAATTACT 170
Query 180 CGAATCAGAATCTCTTTCTTCGTGCACAAGCCCTTTCTTCTTTCTTACGCAAACTCGAAT 239
||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 171 CGAATAATATTCTCTTTCTTCGTGCACAAGCCCTTTCTTCTCTCTTACGCAAACTCGAAT 230
Query 240 CAGAATCCTCTCGATCTAAATTCTTGAAGACTCTAGTTGGTAACGAAAAACACGCTGTCT 299
| ||||||||| | ||||| ||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 231 CCGAATCCTCTTGGTCTAAGTTCTTTAAGACTCTAGTTGGTAACGAAGAACACGCCGTCT 290
Query 300 CTGGATGGTTCCAATGCAGAGAAGATTATCCGAGTGAGATCTGCCATAAATGTGTTGGTG 359
| ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct 291 CAGGATGGTTCCAATGCAGAGAAGATTATCCGAATGGGATATGCCATAAATGTGTTGGTG 350
Query 360 ATCTTCGTGAAATTTCGTCTAG-ATCGTGTGGAAATGCCACGTCAGCTCGTATTCATCTT 418
||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 351 CTCTTCGTGAGATTTCGTCTAGAAT-GTGTGGAAATGCCACGTCAGCTCGTATTCATCTT 409
Query 419 CGAGGATGTCATTTGATATACAAATTCGAACGTATTGATACCCCTGGCGCTCAAGTTAAT 478
||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 410 CGAGGATGTCACTTGATATACAAATTCGAACGTATTGACACCCCTGGCGCTC---TTAAT 466
Query 479 AATCATCACAAGTACAAGTTATTTGAGACCCCGGAACACGGTCTCATCCACAAGATATGC 538
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 467 AATCATCACAACTACAAGTTATTTGAGAGCCCGGAACACGGTCTCATCCACAAGATATGC 526
Query 539 GATGGAGCTACCGCGGAGACTTTCCCCGGATTCGAAGAGATGAGGACGGAGGCACTCACT 598
|| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 527 GAGGGAGCTACCGCAGAGACTTTAGCCGGATTCGAAGAGATGAGGGCGGAGGCACTCATT 586
Query 599 GCAGCCGAAACAGGAGTTGTTGACGGTCACGGATTCTATGAGGATAGCTACAAGCTCCTC 658
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 587 GCAGCCGAAACAGGAGTCGTTGACGGGCACGGATTCTATGAGGATAGCTACAAGCTCCTC 646
Query 659 CACGTTGTGGCTCAATGCGACGGCCACGTTGAAGCTTGCGATTGCGGCGAGTGCATAAGT 718
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 647 CACGTTGTGGCTCAATGCGACGGCCACGTTGAAGCTTGCGATTGCGGAGAGTGCATAAGT 706
Query 719 TCAGCCGCGGCAGCAGCAGCAGAAGAGTGTCGGTGGTCCATAGCCGGACAAATATACTTA 778
|| || |||||||| |||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 707 TCCGCGGCGGCAGCTGCAGCAGAAGAGTGCCGGTGGTCTGTAGCCGGTCAAATATACTTA 766
Query 779 GAAGGGTGCCACGTCGGTTATACATATCACCCACATGAACTTCCCAATGATTCATACCAC 838
||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 767 GAAGGGTGCCACGTCAGTTATACATATCACCCGCATGAACTTCCCGATGATTCATACCAC 826
Query 839 GAAGAAGGTTCAAAAGTAAACACGGGGAAGTCGTTGGCGATTGTTGTAGGAGGAGTAGCG 898
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 827 GAAGAAGGTTCAAAAGTTAACACGGGGAAGTCGTTGGCGATAGTTGTAGGAGGAGTAGCG 886
Query 899 GCATTGGTCTTTGTTGCTATCTTTTTTATGTTCCTAAAAAGCTTGCGGAAAAAAGGAGAT 958
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 887 GCATTGGTCTTTGTTGCTATCTTTTTTATGTTCCTAAAAAGCTTGCGTAAAAAAGGAGAT 946
Query 959 GATTGTTGAAGGGTACATGATCAGAGAGATGTTGGGAAAATAATTCTGTTCCTTGTATTT 1018
||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 947 GATTGTTGAAGAGTACATGATCAGAGAGATGTTGGGAAAATACTTTTGTTCCTTGTAATC 1006
Query 1019 GTTCTACCAACCAAGGAAAACCTCCTTCT 1047
|||||||||||||||||||| ||||||||
Sbjct 1007 GTTCTACCAACCAAGGAAAATCTCCTTCT 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5