BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04380.1
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477698 jgi|Araly1|477698|fgenesh2_kg.3__399__AT3G04380.1 2660 0.0
> Ahg477698 jgi|Araly1|477698|fgenesh2_kg.3__399__AT3G04380.1
Length=1876
Score = 2660 bits (1440), Expect = 0.0
Identities = 1718/1846 (93%), Gaps = 44/1846 (2%)
Strand=Plus/Plus
Query 117 AAGTTCGAACTCTTTGCATGC-AATCATTCGCCGTCTTCTTCCACAATTGTGTTTTTTAG 175
||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 40 AAGCTCGAGCTCTTTGCATGCAAATCATTCGCCGTCTTCTTCCACAATTGTGTTTTTTAG 99
Query 176 CCGGCGGCGGCTGGATTCGAGAAGCTTCCGATTGTTCTGTATGA-TCAGTCTCTCCG-G- 232
| |||||||||||||||||||||||||||||| ||||||| | || |||||| | |
Sbjct 100 -C--CGGCGGCTGGATTCGAGAAGCTTCCGATTGCTCTGTAT-AGTC--TCTCTCTGTGT 153
Query 233 ACTAACCA-GTTCTGTTGAAAGTGATCTCGATATGCAACAAGCGATGCTCACCAATAAAG 291
| | || ||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 154 A-TTTGCAGGTTCTGTTGAAAGTGATCTTGATATGCAACAAGCGATGCTCCCCAATAAAG 212
Query 292 ACGAGAAGGTACTCAAAGCTTTAGAGAGAACAAGGCAATTGGATATTCCCGATGAAAAGA 351
|||||||||||| | |||||||||||| ||||||| |||||| |||| ||||||||||||
Sbjct 213 ACGAGAAGGTACGCGAAGCTTTAGAGAAAACAAGGGAATTGGGTATTGCCGATGAAAAGA 272
Query 352 CAATGCCAGTGCTTATGAAGCTCCTAGAAGAGGCTGGTGGCAATTGGTC-GTATATAAAG 410
||||||||||||||| |||||||||||||||||||| |||||||||||| || |||||
Sbjct 273 CAATGCCAGTGCTTACGAAGCTCCTAGAAGAGGCTGATGGCAATTGGTCATTA-ATAAAA 331
Query 411 TTGGATAACTATACTGCACTGGTCGACGCTATT-TATTCTGTTGAGGATGAGAATAAGCA 469
|||||||||||||||||||| |||||||||||| | |||||||||||| ||||| |||||
Sbjct 332 TTGGATAACTATACTGCACTTGTCGACGCTATTCT-TTCTGTTGAGGAAGAGAAGAAGCA 390
Query 470 AAGTGAAGGTTCATCTAATGGTAATAGAGGGAAGAATCTTAAGGTCATTGACTCTCCTGC 529
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 391 AAGTGAAGGTTCATCTAATGGCAATAGAGGGAAGAATCTTAAGGTCATTGGCTCTCCTGC 450
Query 530 TACTCTGaaaaaaaCTTACGAAACCCGTTCTGCATCCTCAGGTTCCTCCATTCAGGTAGT 589
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 451 TACTCTGAAAAAAACTTACGAAACCCGTTCTGCATCCTCAGGTTCGTCCATTCAGGTAGT 510
Query 590 CCAGAAGCAGCCACAGCTTAGTAATGGTGATCGCAAGAGGAAATATAAAAGCAGAATTGC 649
|||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 511 CCAGAAGCAGCCACAGATTAGCAATGGTGATCGCAAGAGGAAATATAAAAGCAAAATTTC 570
Query 650 TGACATAACTAAAGGTTCAGAGAGCGTTAAAATCCCTCTTGTCGATGATGTTGGGAGTGA 709
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 571 TGACATAACTAAAGGTTCAGAGAGCGTTAAAATATCTCTTGTAGATGATGTTGGGAGTGA 630
Query 710 AGCTGTGCCAAAGTTTACTTACATCCCTCACAACATTGTTTACCAAAGTGCTTATCTCCA 769
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 631 AGCTGTGCCGAAGTTTACTTACATCCCTCACAACATTGTATACCAAAGTGCTTATCTCCA 690
Query 770 CGTGTCTCTGGCTCGAATCTCTGATGAAGATTGCTGCGCAAACTGCAAAGGGAACTGTCT 829
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 691 CGTGTCTCTGGCTCGAATTTCTGATGAAGATTGCTGCGCGAACTGCAAAGGGAACTGTCT 750
Query 830 TTCAGCTGACTTTCCTTGCACTTGTGCTCGTGAAACCAGTGGAGAATATGCTTATACCAA 889
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTCAGCTGACGTTCCTTGCACTTGTGCTCGTGAAACCAGTGGAGAATATGCTTATACCAA 810
Query 890 AGAAGGGCTGCTAAAGGAAAAGTTTCTGGACACCTGTCTTAAGATGAAAAAGGAACCAGA 949
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 AGAAGGGTTGCTAAAGGAAAAGTTTCTGGACACCTGTCTTAAGATGAAAAAGGAACCAGA 870
Query 950 TTCGTTCCCTAAAGTTTACTGCAAAGACTGCCCTTTGGAGAGAGATCACGATAAGGGCAC 1009
| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 871 TACGTTCCCTAAAGTTTACTGCAAAGACTGCCCTTTGGAGAAACATCACGATAAGGGCAC 930
Query 1010 ATATGGAAAATGTGATGGACACTTAATCCGAAAGTTCATCAAGGAATGCTGGAGAAAGTG 1069
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 931 ATATGGAAAATGTGATGGACACTTAATCCGGAAGTTCATCAAGGAATGCTGGAGAAAGTG 990
Query 1070 TGGATGTGATATGCAGTGTGGAAATCGAGTAGTACAGAGAGGGATAAGGTGCCAACTGCA 1129
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 991 TGGATGTGATATGCAGTGTGGAAATCGAGTAGTACAGAGAGGGATAAGGTGCGAACTGCA 1050
Query 1130 GGTTTACTTTACTCAAGAAGGGAAAGGATGGGGTCTTAGAACACTGCAAGACTTGCCCAA 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1051 GGTTTACTTTACTCAAGAAGGGAAAGGATGGGGTCTTAGAACACTGCAAGACTTGCCAAA 1110
Query 1190 AGGAACCTTTATCTGTGAATACATTGGTGAAATATTGACCAACACGGAGTTATACGATCG 1249
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1111 AGGAACCTTTATCTGTGAATACATTGGTGAAGTATTGACCAACACGGAGTTATACGACCG 1170
Query 1250 GAATGTTAGGTCTAGTAGTGAACGACATACATATCCTGTAACTCTGGATGCAGACTGGGG 1309
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1171 GAATGTAAGGTCTAGTAGTGAACGGCATACATATCCTGTAACTCTGGATGCAGACTGGGG 1230
Query 1310 TTCTGAAAAGGATCTAAAAGATGAAGAAGCTCTCTGCCTGGATGCCACAATCTGTGGAAA 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 TTCTGAAAAGGATCTAAAAGATGAAGAAGCTCTCTGCCTGGATGCCACAATCTGTGGAAA 1290
Query 1370 TGTCGCAAGGTTTATCAATCACAGATGCGAGGATGCAAACATGATTGATATTCCGATAGA 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1291 TGTCGCAAGGTTTATCAATCACAGATGCGAGGATGCAAACATGATTGATATTCCGGTAGA 1350
Query 1430 GATAGAGACGCCTGACAGACATTATTATCATATTGCtttttttACCCTACGAGACGTGAA 1489
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1351 AATAGAGACGCCTGACAGACATTATTATCATATTGCCTTTTTTACCCTACGGGACGTGAA 1410
Query 1490 GGCCATGGATGAGTTGACATGGGATTACATGATAGACTTCAATGATAAAAGTCATCCTGT 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 GGCCATGGATGAGTTGACATGGGATTACATGATAGACTTCAATGATAAAAGTCATCCTGT 1470
Query 1550 AAAGGCATTTAGATGTTGCTGCGGAAGCGAATCATGCAGAGACAGAAAAATAAAAGGATC 1609
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1471 AAAGGCATTTAGATGTTGCTGCGGAAGCGAATCATGCAGAGACAGAAAAATAGAAGGATC 1530
Query 1610 TCAAGGCAAGTCTATAGAGAGAAGAAAGATTGTTTCTGCTAAAAAACAACAAGGTTCCAA 1669
||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 1531 TCAAGGCAAGTCTTTAGAGAGAAGAAGGGTTGTTCCTGCTAAAAAACAACAAGGTTCCAA 1590
Query 1670 AGAGGTGTCTAAAAAGCGCAAATGAGACTGGTCATTATTTAGAGTTAAACATTAAAGAAA 1729
|| |||| || |||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 1591 AGCGGTGGCTTTAAAGCGCAAATGAGACCGATCAATATTTAGAGTTAAACATTAAAGAAA 1650
Query 1730 GCATGAG-CTCACAAAACACTATGATCCATCGCGAGCTCTGCATGATTCAACTAGCTTTT 1788
||||| | | ||||||||| || ||||| ||||||||||| ||||| ||||||||
Sbjct 1651 ACATGAAAC-CGCAAAACACTTTGCTCCATAATGAGCTCTGCATAATTCAGCTAGCTTT- 1708
Query 1789 CCTTCTTGATGACATATACAACTTTTATGGTCTGCAG-TTTTTTCT-CATT-TACAATCT 1845
||| ||||||| |||| | |||||||||||||||| |||||| | | ||||||||
Sbjct 1709 CCTGGTTGATGA--TATA-A-CTTTTATGGTCTGCAGATTTTTTTTTCCCCGTACAATCT 1764
Query 1846 CTTCTTTAGGTaaaaaaaaGTGTTATGTTGCCTAACCAAAGAAACTCACTGTTTAGTTCT 1905
||||||| | | | |||||||||||| |||||||||||||||| ||||||
Sbjct 1765 CTTCTTT-G-T---------T---ATGTTGCCTAACTAAAGAAACTCACTGTT-AGTTCT 1809
Query 1906 GTTCTTCAAATTTCATGGCATATGTCAAAATAAATAAACCTTTTTT 1951
|||||| ||||||||||||||| |||||||||| ||| ||||||
Sbjct 1810 GTTCTTGAAATTTCATGGCATA---CAAAATAAATGAACATTTTTT 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78389724210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5