BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04400.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927987 jgi|Araly1|927987|scaffold_300444.1 909 0.0
Ahg482278 jgi|Araly1|482278|fgenesh2_kg.4__1338__AT2G33370.1 453 9e-127
Ahg470426 jgi|Araly1|470426|fgenesh2_kg.1__380__AT1G04480.1 425 2e-118
> Ahg927987 jgi|Araly1|927987|scaffold_300444.1
Length=528
Score = 909 bits (492), Expect = 0.0
Identities = 516/528 (98%), Gaps = 0/528 (0%)
Strand=Plus/Plus
Query 7 ACCCTCTCGGCGCTGCCATTGAAACTCTTTCAAGGAGAGAGCTGCTACTCTGCAACCATG 66
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ACCCTCTCGGCGCTGTCATTGAAACTCTTCCAAGGAGAGAGCTGCTACTCTGCAACCATG 60
Query 67 TCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTTCCA 120
Query 127 GTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATTTCG 186
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GTGGCAGCCACAGTGAACTGTGCTGACAACACAGGAGCTAAGAACCTTTACATCATTTCG 180
Query 187 GTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATGGTT 246
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCATGTGTTGGTGATATGGTT 240
Query 247 ATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTCATT 300
Query 307 GTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAAT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTAGGCAGAGGAAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTTCGAAGATAAT 360
Query 367 GCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCACTGGACCAATC 426
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCAATCACTGGACCAATC 420
Query 427 GGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAA 486
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 421 GGAAAGGAGTGTGCTGATCTCTGGCCAAGAATTGCAAGTGCTGCAAACGCCATCGTTTAA 480
Query 487 GCAAGCTTGAGATCTCTATGTTTTGTGTTGAACGTTTAGCATTATCTC 534
||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 481 GCAAGCTTGAGATCTCTATATTTTGTGTTAAACGTTTTGCATTATCTC 528
> Ahg482278 jgi|Araly1|482278|fgenesh2_kg.4__1338__AT2G33370.1
Length=654
Score = 453 bits (245), Expect = 9e-127
Identities = 372/433 (86%), Gaps = 9/433 (2%)
Strand=Plus/Plus
Query 64 ATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTT 123
||||||||||||||| | |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 81 ATGTCGAAGCGAGGACGTGGAGGAACGTCTGGTAACAAATTCAGGATGTCACTTGGTCTG 140
Query 124 CCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATT 183
|| || |||||||| ||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 141 CCCGTTGCAGCCACAGTGAACTGTGCAGACAACACAGGTGCTAAGAACCTTTACATCATT 200
Query 184 TCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATG 243
||||||||||||||||| |||||||| || || || || || || ||||||||||| |||
Sbjct 201 TCGGTTAAAGGAATCAAAGGTCGTCTCAATCGGTTACCTTCTGCTTGTGTTGGTGACATG 260
Query 244 GTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTC 303
|||||||| ||||| |||||||||||||| || ||| | || ||||| |||||||||||
Sbjct 261 GTTATGGCCACTGTCAAGAAAGGTAAGCCAGACCTCAGGAAAAAGGTTCTTCCTGCTGTG 320
Query 304 ATTGTTAGGCAGAGG-AAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTA-TTTCGAAG 361
||||||||||| | | ||||| |||||||||||||||||||| |||||||| ||| ||||
Sbjct 321 ATTGTTAGGCA-ACGTAAGCCATGGCGCCGAAAGGACGGTGTTTTCATGTACTTT-GAAG 378
Query 362 ATAATGCTGGTGTCATTGTCAATCCC-AAGGGTGAAATGAAAGGATCTGCTATCACTGGA 420
||||||| || || ||||| || ||| ||||| ||||||||||| ||||| || ||||||
Sbjct 379 ATAATGCGGGAGTGATTGTGAA-CCCTAAGGGAGAAATGAAAGGTTCTGCGATTACTGGA 437
Query 421 CCAATCGG-AAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCAT 479
|| || || |||| ||||||| ||||| |||||||| || || |||||||| || |||||
Sbjct 438 CCCATTGGGAAAG-AGTGTGCAGATCTCTGGCCAAGGATTGCTAGTGCTGCTAATGCCAT 496
Query 480 CGTTTAAG-CAAG 491
|| |||| ||||
Sbjct 497 TGTCTAAGTCAAG 509
> Ahg470426 jgi|Araly1|470426|fgenesh2_kg.1__380__AT1G04480.1
Length=593
Score = 425 bits (230), Expect = 2e-118
Identities = 365/431 (85%), Gaps = 6/431 (1%)
Strand=Plus/Plus
Query 59 CAACCATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGG 118
|||| |||||||||||||| | ||||| |||||||||||||| ||||||||||||||||
Sbjct 11 CAACAATGTCGAAGCGAGGGCGTGGAGGTACCTCTGGTAACAAATTCAGGATGTCACTGG 70
Query 119 GTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACA 178
||||||||||||| || || || |||||||| || |||||||| |||||||| || ||||
Sbjct 71 GTCTTCCAGTGGCGGCGACGGTTAACTGTGCCGATAACACCGGTGCTAAGAATCTGTACA 130
Query 179 TCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTG 238
|||||||||| ||||| ||||| ||||||||||| || || || || || || || || |
Sbjct 131 TCATTTCGGTGAAAGGTATCAAAGGTCGTCTTAATCGATTACCTTCTGCTTGCGTCGGCG 190
Query 239 ATATGGTTATGGCTACTGTTAAGAAAGG-TAAGCCTGATCTCCGTAAGAAGGTGCTTCCT 297
| ||||| ||||| || || || ||||| ||||||||||||||| || ||||| ||||||
Sbjct 191 ACATGGTGATGGCCACCGTCAA-AAAGGGTAAGCCTGATCTCCGGAAAAAGGTTCTTCCT 249
Query 298 GCTGTCATTGTTAGGCAGAGG-AAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTT 356
|| ||||| || ||||| | | || || |||||||||||||| |||||||||||||| ||
Sbjct 250 GCCGTCATCGTCAGGCA-ACGCAAACCATGGCGCCGAAAGGATGGTGTCTTCATGTACTT 308
Query 357 CGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCAC 416
||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || ||
Sbjct 309 CGAAGATAATGCTGGAGTCATTGTCAACCCCAAGGGAGAAATGAAAGGTTCTGCAATTAC 368
Query 417 TGGACCAATCGG-AAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACG 475
||| || || || |||| ||||||||||||| |||||||| || || |||||||| || |
Sbjct 369 TGGTCCTATTGGGAAAG-AGTGTGCTGATCTTTGGCCAAGGATTGCTAGTGCTGCCAATG 427
Query 476 CCATCGTTTAA 486
|||| || |||
Sbjct 428 CCATTGTCTAA 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5