BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04420.1
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311334 jgi|Araly1|311334|fgenesh1_pm.C_scaffold_1000114 774 0.0
Ahg333558 jgi|Araly1|333558|fgenesh1_pg.C_scaffold_1000123 241 1e-62
> Ahg311334 jgi|Araly1|311334|fgenesh1_pm.C_scaffold_1000114
Length=1134
Score = 774 bits (419), Expect = 0.0
Identities = 518/563 (92%), Gaps = 17/563 (3%)
Strand=Plus/Plus
Query 95 ATGGAGAATCCGGTGGGTTTAAGATTCCGTCCGACCGACAAGGAGATCGTCGTCGATTAC 154
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGAATCCGGTGGGTTTAAGATTCCGTCCGACCGACGAGGAGATCGTCGTCGATTAC 60
Query 155 CTCCGACCAAAAAACTC-CGATAGGGACACGAGTCATGTTGATCGAGTCATTAGCACAGT 213
|||||||||||||| || ||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 61 CTCCGACCAAAAAA-TCTCGAAAGGGACACGAGCCATGTCGATCGAGTCATTAGCACAGT 119
Query 214 CACTATCCGTAGCTTCGACCCTTGGGAGTTACCTTGCCAGTCTAGGATCAAACTGAAAGA 273
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CACTATCCGTAGCTTTGATCCTTGGGAGTTACCTTGCCAGTCGAGGATCAAACTGAAAGA 179
Query 274 TGAGTCTTGGTGTTTCTTCAGCCCTAAGGAGAACAAATATGGCAGAGGTGATCAACAAAT 333
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 180 TGAGTCTTGGTGTTTCTTCAGCCCTAAGGAGAACAAATATGGCAGAGGTGAGCAACAGAT 239
Query 334 TAGAAAAACGAAATCTGG-TTACTGGAAGATTACTGGCAAACCAAAGCCTATCTTGCGTA 392
|||||||||||||||||| || |||||||||||||| ||||||||| ||||| ||||||
Sbjct 240 TAGAAAAACGAAATCTGGGTTT-TGGAAGATTACTGGAAAACCAAAGGCTATCATGCGTA 298
Query 393 ACCGCCAAGAGATCGGTGAGAAAA-AGGTTTTGATGTTTTAC-ATGAGTAAGGAACTTGG 450
| |||||| ||||||||||||||| | |||||||||||||| | ||||||||||| ||
Sbjct 299 ATCGCCAAAAGATCGGTGAGAAAAGAA-TTTTGATGTTTTACTAC-AGTAAGGAACTCGG 356
Query 451 TGGATCCAAATCCGACTGGGTTATGCACGAGTACCATGCTTTCTCTCCTACTCAGATGAT 510
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 357 TGGATCCAAATCCGATTGGGTTATGCACGAGTACCACGCTTTCTCTCCTACTCAGATGAT 416
Query 511 GATGACATATACAATATGTAAAGTTATGTTTAAGGGTGACGTGAGAGAGATT--T-CT-- 565
||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 417 GATGACATACACAATCTGTAAAGTTATGTTTAAGGGTGACGTGAGAGAGATTCCTTCTGC 476
Query 566 T-CTTCTTCTGCTTCTT---ATGGTAGTGAAATTGAGCAGAGTCGTGACTCTTTAATCCC 621
| |||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 477 TTCTTCTTCTTCTTCTTCTCATGGTAGTGGAATTGAGCAGAGTCGTCCCTCTTTAATCCC 536
Query 622 TCTTCTTGTGAACGATTCTGAGG 644
|||||||| |||| |||||||||
Sbjct 537 TCTTCTTGAGAACAATTCTGAGG 559
Score = 289 bits (156), Expect = 4e-77
Identities = 202/224 (90%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 898 AATCAACTTAGTGTCACTAACTCAAGAGGTGAGCCAAGCTCTGATAACCAGTATTGATAC 957
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 909 AATCAAGTTAGTGTCACTAACTCAAGAGGTGAGCCAAGCTCTGATAACCAGTATCGATAC 968
Query 958 ACCCGAGAAGATTAAGAGTCCTTATGATGATGCACAAGGGACTGGGGCTGGAGGGCAAAA 1017
||||||||||| |||| ||||| | |||||||||||| ||||| | ||||| ||| ||
Sbjct 969 ACCCGAGAAGAAGAAGAATCCTTCTAATGATGCACAAGAGACTGAGATTGGAGAGCATAA 1028
Query 1018 ATTGGGTCAAGAGAC--TCGAGAGAAGAAACGAGCTGGTTTCTTTCACAGGATGATACAA 1075
||||||||||||||| || | |||||||| | |||||||||||||||||||||||||||
Sbjct 1029 ATTGGGTCAAGAGACGATC-A-AGAAGAAAAGTGCTGGTTTCTTTCACAGGATGATACAA 1086
Query 1076 ATATTCGTCAAGAAAATTCACCAATGTTCTTCTATCTCAAGAAC 1119
| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1087 AAATTCGTCAAGAAAATTCACCTTTGTTCTTCTATCTCAAGAAC 1130
Score = 215 bits (116), Expect = 7e-55
Identities = 205/248 (83%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 645 AAGAAGCTCAAATCGAGGATGCTATACCAATAGAGGAATGGGAAACATGGTTGACTGATG 704
||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 617 AAGAAGCTCGAATCGAGGATGCTATACCGAGAGAGGAATGGGAAACATGGTTGAATGATG 676
Query 705 ATGGTGTTGATGAGCAGGTGAATCATATTATGAATATGAAAGATGATCGCAACAACCACA 764
||| || || ||| || | | | ||| ||| |||| ||||| ||||||| | |||
Sbjct 677 ATGATGCTGGTGAACA-GAGGA--GTATCATGTTTATGCAAGATAATCGCAATGAGTACA 733
Query 765 GGCCTCAAAAGCCATTGACTGGTGTCTTGATTGACGATAGTAGTGATGATGATGATGATT 824
| |||| |||| |||| ||||||||||| | ||| |||| ||||||||| | ||||||
Sbjct 734 GACCTCCAAAGTCATTAACTGGTGTCTTCAGTGATTATAGCAGTGATGAT-A--ATGATT 790
Query 825 CTGATTTGCTATCTCCAACAACAAATTCTATTGAAAATTCGAGCACTTGTGATAGTTTTG 884
| |||||||||||| |||| || |||||||| ||| || ||||||||||||||||||||
Sbjct 791 CGGATTTGCTATCTGCAACTACGAATTCTATCCAAACTTGGAGCACTTGTGATAGTTTTG 850
Query 885 GTAGCTCA 892
||||||||
Sbjct 851 GTAGCTCA 858
> Ahg333558 jgi|Araly1|333558|fgenesh1_pg.C_scaffold_1000123
Length=651
Score = 241 bits (130), Expect = 1e-62
Identities = 387/504 (77%), Gaps = 46/504 (9%)
Strand=Plus/Plus
Query 95 ATGGAGAATCCGGTGGGTTTAAGATTCCGTCCGACCGACAAGGAGATCGTCGTCGATTAC 154
|||| ||||||||||||||| |||||||||||||||||| ||||||| |||| | |||||
Sbjct 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAGGAGATAGTCGACCATTAC 60
Query 155 CTCC-GACCAAAAAACTCCGATAGGGACACGAGTCATGTTGATCG-AGTCATTAGCACAG 212
|||| | ||||| || || || |||||||| ||||| ||| | ||||||||||||||
Sbjct 61 CTCCGGGTGAAAAATCT-TGAAAGTGACACGAGCCATGTCGAT-GAAGTCATTAGCACAG 118
Query 213 TC-ACTATCCGTAGCTTCGACCCTTGGGAGTTACCTTGCCAGTCTAGGATCAAACT-GAA 270
|| | |||| ||||||| || |||||| | ||||||| |||||||| ||||||| | ||
Sbjct 119 TCGA-TATCTGTAGCTTAGAACCTTGGAATTTACCTTCCCAGTCTATGATCAAA-TCGAG 176
Query 271 AGATG-AGTCTTGGTGTTTCTTCAGCCCTAAGGAGAACAAATATGGCAGAGGTGATCAAC 329
|||| || |||| |||||| | | ||||||||| |||||| ||||||||||| ||
Sbjct 177 TGATGCGGT-TTGGCATTTCTTTGGTCGTAAGGAGAATAAATATAACAGAGGTGATCGAC 235
Query 330 AAATTAGAAAAACGAAATCTGGTTACTGGAAGATTACTGGCA--AACCA-AAGCCTATC- 385
| || |||||||| || ||||||| ||||||| ||||| | |||| || ||||
Sbjct 236 AGATGAGAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGG-AGTTACCATAA--ATATCA 292
Query 386 T-TGC-------GTAACCGCCAAGAGATCGGTGAGAAAAAGGTTTTGATGTTTTACATGA 437
| || | || ||| || |||||||||||||||||||||||||||||||| | |
Sbjct 293 TGCGCAAAAGGGGAAATCGCGAAAAGATCGGTGAGAAAAAGGTTTTGATGTTTTACTTTA 352
Query 438 GTAAGGAACTTGGTGGATCCAAATCCGACTGGGTTATGCACGAGTACCATGCT---TTCT 494
||| | | | || || ||||| ||||||||||| ||||| || ||| ||||
Sbjct 353 ACAAG-A----G-TC--TC-AAGTCCGATTGGGTTATGCATGAGTATCACGCTACGTTCT 403
Query 495 C-TCCTACTCAGATGATGATGACATATACAATATGTAAAGTTATGTTTAAGGGTGAC-GT 552
| || | || | || |||||||||||||| | || ||||| | |||||||||||| |
Sbjct 404 CGTC-TCCT-A-ATC-TGATGACATATACACTCTGCAAAGTCAAGTTTAAGGGTGAAAGC 459
Query 553 GAGAGAGATTTCT-TCTTCTTCTG 575
|||||| |||| | ||||||||
Sbjct 460 -AGAGAGGGTTCTGT-TTCTTCTG 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48416104590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5