BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04430.1
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909881 jgi|Araly1|909881|Al_scaffold_0001_135 933 0.0
> Ahg909881 jgi|Araly1|909881|Al_scaffold_0001_135
Length=600
Score = 933 bits (505), Expect = 0.0
Identities = 563/591 (95%), Gaps = 4/591 (1%)
Strand=Plus/Plus
Query 1 ATGTATAGATGCACATTTAACCCACCTGAAGAAGAACTCATTAACTATTACTTGAATAAC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTATAGATGCACATTTAACCCACCTGAGGAAGAACTCATTAACTATTACTTGAATAAC 60
Query 61 AAGATCACAGAGAATGATGATCTAGTGGGGAA-GCAAATCGCCGAGGTCAATATATTG-C 118
|||||||||||||||||||||||||| ||||| |||||| |||| ||||||||| || |
Sbjct 61 AAGATCACAGAGAATGATGATCTAGT-GGGAAGGCAAATAACCGAAGTCAATATA-TGTC 118
Query 119 ACCATGAACCTGCAGATTTACCTGGGCTGGCGAAGATAGAATCGAGTCATACTTGGTACT 178
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 119 ACCATGAACCTGCAGATTTACCTGGGCTGGCGAAGATAGAATCGAGTCACACTTGGTACT 178
Query 179 TCATATCGCCGGTGGAGAAGTTTGGGAAGCTCAACCGAACGAAGAGGGTGTCGAGGTCAG 238
||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||
Sbjct 179 TCATATCGCCGGTGGAGAAGTTTGGAAAGCTGAACCGAACGAAGAGGGCGTCGAGGACAG 238
Query 239 GGCACTGGAAGATAACCGGAAATAGTCGTACCATTAAGGACGTTGATGGTAACCCTATCG 298
||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct 239 GGCACTGGAAGATAACCGGGAATAGTCGTACCATTAAGGACATTGATGGTAATCCTATCG 298
Query 299 GTTTAAAGAAATTTCTTGTTTTCCAAGAAAACAAAAGATCTTCTTCTTCCTCGTTATCCA 358
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 299 GTTTAAAGAAGTTTCTTGTCTTCCAAGAAAACAAAAGATCTTCTTCTTCCTCGTCATCCA 358
Query 359 CCACTACCACCCAACAACAGAAGACCAATTGGATTATCCATGAATTTCATTCCTTTCTCC 418
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCACTACCACCCAACAACAAAAGACCAATTGGATTATCCATGAATTTCATTCCTTTCTCC 418
Query 419 CCCATCCCAACAAGATGCTGACGGAGAACAAGAACGAAGATTATGGCGGAGATTATTGTA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACCATCCCAACAAGATGCTGACGGAGAACAAGAACGAAGATTATGGCGGAGATTATTGTA 478
Query 479 ATGGCTTAGACGAGCTTCTCCAATCACTGGAACAAGGTGAATCCAGCGGCCTCCTTTTCG 538
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 479 ATGGCTTAGACGAGCTTCTCCCTTCAATGGAACAAGGTGAATCCAGCGGCCTCCTTCTCG 538
Query 539 GAGAAAATGGACACGCGTGTGAACAAGATACCGCAGAAAACTCCAATGTGA 589
|||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 539 GAGAAAATGGACACGCGTATGAACAAGACACCACAGAAAACTCCAATGTGA 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21863152497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5