BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04450.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317308 jgi|Araly1|317308|fgenesh1_pm.C_scaffold_3000324 1956 0.0
> Ahg317308 jgi|Araly1|317308|fgenesh1_pm.C_scaffold_3000324
Length=1323
Score = 1956 bits (1059), Expect = 0.0
Identities = 1247/1336 (93%), Gaps = 20/1336 (1%)
Strand=Plus/Plus
Query 6 ATGACACTTGCTAGCGATTTTGGTTTTCCATCCGCTATATCTTCATCTTTTACAATTCTA 65
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||
Sbjct 1 ATGACACTTGCTAGCGATTTTGGTTTTCCAACAGCTATGTCTTCATCTTTTACAACTCTA 60
Query 66 GAAGAGAGATACCACAATAACTTTCCTAACACTTTGTGTGTTTCATCAGGACAGGAATC- 124
||||||||||||| | | |||||||||||||||||||| |||||||||||||||||| |
Sbjct 61 GAAGAGAGATACCGCCACAACTTTCCTAACACTTTGTGGGTTTCATCAGGACAGGAA-CT 119
Query 125 GATGAATAACAACCCCGTCCCCTGTCAGGTGTTTCCTCTGGTCTCTGGTGGTAGTTCTGG 184
||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 120 GATGAATAACAGTCCCGTCCCCTGTCAGGTGTTTCCTCTGGTCTCTGGCGGCAGTTCTGG 179
Query 185 TGGGAATTTGTTTTCATCTTCTTCCGGATTCTGCAATGGTGTCTATGTTTCATCTTCCTC 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGGTAATTTGTTTTCATCTTCTTCCGGATTCTGCAATGGTGTCTATGTTTCATCTTCCTC 239
Query 245 CCAGGCACGGCCATCTGTTTCTACCGTGCCAAGAGACAGAATTACTGTTGCTCACGTCTC 304
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 240 CCAGGCACGGCCATCTGTTTCTACCGTGCAAAGAGACAGAATGACTGTTGCTCACGTCTC 299
Query 305 TGGTGAAGGGCAGAGGCAGGAATGCCCTGTGGAAACACATTCCTTGCAATTGATCAATCA 364
||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 300 TGGTGAAGGGCAGAGGCAGGAATGCTCTGTGGAAACACAATCCTTGCATTTGATCAATCA 359
Query 365 ACCTCAAGAACAGAAAATTATGACTTGGTCTTCAGACCAGATTCGGGGCTTCTTCGATTT 424
||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||| |||||
Sbjct 360 ACCTCAAGAACAGAAAAATATGACATGGTCTTCAGACCAGCTTCAGGGCTTCTTTGATTT 419
Query 425 TCCTGTTCCAGATCCACAAGCAGCGAGCAGCAGAACTATGGTTTCATCCAAGGAAGTGCT 484
||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||
Sbjct 420 TCCTGTTCCGGATCCACAAGCAGAGAGCAGCAGAACTATGGTCTCATCCAAGGAAGTCCT 479
Query 485 TTCAAAATGCGAATGGCCAGACTGGGCGGATCAGTTGATCTCTGATGATAGTCTTGAACC 544
|| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TTTGAAATACGAATGGCCAGACTGGGCGGATCAGTTGATCTCTGATGATGGTCTTGAACC 539
Query 545 AAATTGGTCGGAGCTTCTAGGTGATCCTAATGTACTCAATCTATATTCAAAGATAGAAAC 604
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | ||
Sbjct 540 AAATTGGTCGGAGCTTCTAGGTGATCCTAATGTCCTCAATCTAGATTCAAAGATA-ACAC 598
Query 605 -ACAGTCTTCTGATATAGCAAGGCAAGAGATCGTCTTTAGAAA-TCAGCATCAGGTGGAT 662
|| ||||||||||| ||| ||||||||||| || ||| |||| ||||||||||||||||
Sbjct 599 CACCGTCTTCTGATAAAGCGAGGCAAGAGATAGTATTT-GAAAATCAGCATCAGGTGGAT 657
Query 663 CCATCAATGGAGCCGTTTAATGCCAAAAGCCCACCAGCTAGTTCAATGACATCTAAGCAA 722
||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 658 CCATCAATGGAGCCGTTTAATACCAAAAATTCACCAGCTATTTCAATGACATCTAAGCAA 717
Query 723 AGAATGCGTTGGACACCAGAACTTCATGAAGCATTTGTCGAAGCTATCAATCAGCTCGGT 782
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 718 CGAATGCGTTGGACACCAGAACTCCATGAAGCATTTGTTGAAGCTATCAATCAGCTCAGT 777
Query 783 GGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCATCAATAGCCCTGGGTTGACC 842
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 778 GGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCATGAATAGCCCCGGGTTGACC 837
Query 843 GTTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACTGCAAGGTATAAACCAGAGCTT 902
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 ATTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACGGCAAGGTATAAACCAGAGCTT 897
Query 903 TCC-AAAGATACAGAAGAACCTCTAGTAAAGAATTTGAAAACCATTGAAGATATCAAATC 961
|| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 898 TCAGAAA-ATACAGAAGAACCTCAAGTGAAGAATTTGAAAACCATTGAAGATATCAAATC 956
Query 962 TCTTGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTCCGGTTACAGATGAAAGTTCA 1021
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 957 TCTGGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTACGGTTACAGATGAAAGTTCA 1016
Query 1022 AAAACAACTCCACGAGCAACTTGAGATCCAAAGATCACTGCAGTTACAAATCGAAGAACA 1081
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1017 AAAACAACTCCACGAGCAACTTGAGATCCAAAGATCATTGCAGTTACAAATCGAAGAACA 1076
Query 1082 AGGTCGGTATCTTCAGATGATGATTGAGAAACAACAGAAGATGCAAGAGAACAAAAAAGA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AGGTCGGTATCTTCAGATGATGATTGAGAAACAACAGAAGATGCAAGAGAACAAAAAAGA 1136
Query 1142 CTCTACTTCCTCATCATCAATGCCAGAAGCTGACCCTTC---AGCTCCATCACCAAACCT 1198
| || ||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1137 CACTTCTTTCTCATCATCAATGCCAGAAGTTGACCCTTGTTTAGCTCCATCACCAAACCT 1196
Query 1199 TTCACAACCTTTCCTCCATAAAGCAACCAATTCAGAACCATCAATAACTCAGAAACTGCA 1258
||||||| |||||| |||||||||||||||||||| ||||||||||| || | ||
Sbjct 1197 TTCACAAGCTTTCC---ATAAAGCAACCAATTCAGAATCATCAATAACT--GA---T-CA 1247
Query 1259 GAATGGTTCTAGCACAATGGATCAAAGTGAATCTACTTCTGGGACTAGTAATAGAAAACG 1318
|||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 1248 GAATGGTTATAGCACAATGGATCAAAGTGAATCTGCGTCTGGGACTAGTAATAGGAAACG 1307
Query 1319 GGTTAGAGAAGATTAG 1334
||||||||||||||||
Sbjct 1308 GGTTAGAGAAGATTAG 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5