BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04460.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927989 jgi|Araly1|927989|scaffold_300446.1 1958 0.0
> Ahg927989 jgi|Araly1|927989|scaffold_300446.1
Length=1222
Score = 1958 bits (1060), Expect = 0.0
Identities = 1166/1218 (96%), Gaps = 4/1218 (0%)
Strand=Plus/Plus
Query 144 GGAGGAGGAAGAAGATGTTGTTTCAGGTGGGAGGTGAAGGCACACGCCCCACCTTCTTTG 203
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 GGAGGAAGAAGAAGATGTTGTTTCAGGTGGGAGGTGAAGGCACACGCCCCACCTTCTTTG 66
Query 204 AGATGGCTGCTGCTCAGCAACTTCCTGCTAGCCTTCGCGCCGCTCTCACCTATTCCCTCG 263
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 67 AGATGGCTGCTGCTCAGCAACTCCCGGCTAGCCTTCGCGCCGCTCTCACCTATTCCCTCG 126
Query 264 GCGTTTTTGCTTTGAGACGATCGTTTCTCCATAAGATTTTAGACTATGAGGATGAATTCT 323
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 127 GCGTTTTTGCTTTGAGACGATCGTTTCTCCATAAGATTTTAGATTATGAGGATGAATTCT 186
Query 324 TTGCTGCTCTGATGCTTATTCTTGAAGGACACAGCTTACGAACCACAGATGGTTCCTTTG 383
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 187 TTGCTGCTCTCATGCTTATTCTTGAAGGACACAGCTTACGAACCACAGATGCTTCCTTTG 246
Query 384 CTGAATCATTGTATGGTTTAAGGAGGAAATCAGCGAGATTGAGATTGAGGAAAGACAGTG 443
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 247 CTGAATCATTGTATGGTTTGAGGAGGAAATCGGTGAGATTGAGATTGAGGAAAGACAGTG 306
Query 444 CCAGGAAGGATTCTAGCGAAGAAGTTCAACATTCTGGTTTAGAGAAGCGTCAGAGAATCC 503
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 307 TCAGGAAGGATTCCGGCGAAGAAGTTCAACATTCTGGTTTAGAGAAGCGCCAGAGAATCC 366
Query 504 TTTCTGTTGTGTTTCTGGTTGTGTTACCGTATTTCAAGTCAAAATTGCATGCTATATATA 563
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 367 TTTCTGTTGTGTTTCTGGTTGTATTACCGTATTTCAAGTCAAAATTGCATGCTATCTATA 426
Query 564 ATAAAGAAAGAGAGGCTAGGCTCCGGGAAAGTTTATGGGGTGCAGAGGATCAAGGATTTG 623
||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 427 ATAAAGAAAGAGAAGCTAGGCTCCGGGAAAGTTTATGGGGAGCAGAGGATCCAGGATTTG 486
Query 624 ATGAAGCTGACTTCTTCACAGGGGATGATTCAATTGTTTCAAGAGAGCCTAGTGGGAATG 683
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ATGAAGCTGACTTCTTTACTGGGGATGATTCAATTGTTTCAAGAGAGCCTAGTGGGAATG 546
Query 684 AAGAGCTTTCTGTTCGAGTACAATTAGCTACCAAAATTAAAAAGTTTATAGCTGTCTGCT 743
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 547 AAGAGCTTTCTGTTCGAGTACAATTAGCTACCAAAATAAAAAAGTTTATAGCTGTCTGCT 606
Query 744 ATCCTTGGATACATGCATCAAGTGAAGGATTATCGTTCACTTACCAGCTCTTATATCTGC 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ATCCTTGGATACATGCATCAAGTGAAGGATTATCGTTCACTTACCAGCTCTTATATCTGC 666
Query 804 TGGACGCTACTGGATTTTATTCTCTTGGGCTACAAGCTCTTGGGATTCAAGTTTGTAGAG 863
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 667 TGGACGCTACTGGATTTTATTCTCTTGGGCTACAAGCTCTTGGGATTCAAGTTTGTCGAG 726
Query 864 CTACAGGGCAAGAACTGATGGATACATCCTCAAGGATTTCAAAGATTCGGAATCATGAGC 923
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 727 CTACAGGGCAAGAACTGATGGATACATCATCAAGAATTTCAAAGATACGGAATCATGAGC 786
Query 924 GTGAGAGACTTCGTGGTCCTCCATGGTTAAAAACGGTGCAAGGGGCACTTCTTAGCTGCT 983
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 787 GTGAGAGACTTCGTGGTCCTCCATGGTTAAAAACAGTGCAAGGGGCACTTCTTAGCTGCT 846
Query 984 CATATGCTGTGCTTGACTATGCCCAAACCGGTCTAATTGCAGCAGTTTTTATCTTCAAAA 1043
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 847 CATATGCTGTGCTTGACTACGCCCAAACCGGTCTGATTGCAGCAGTTTTTATCTTTAAAA 906
Query 1044 TGATGGAATGGTGGTATCAATCCGCTGAAGAGAGATTATCAGCTCCAACAGTGTACCCTC 1103
|||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 907 TGATGGAATGGTGGTATCAATCAGCTGAAGAAAGATTATTAGCTCCAACAGTGTACCCTC 966
Query 1104 CACCTCCACCTCCTCCAGCCCCAAAGATGGCCAAAGAAGGAATCCCTCTACCTCC-AGAC 1162
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||
Sbjct 967 CACCTCCACCTCCTCCAGCCCCAAAGATGGCGATAGAAGGAATCCCTCTACCTCCCA-AC 1025
Query 1163 AGATCCCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCT 1222
||||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 1026 AGATCCCTCTGCGCGTTATGCTTGCAAACACGTGCAAACCCATCAGTTGTCACAGTCTCT 1085
Query 1223 GGATTTGTTTTCTGCTATTCTTGCGTATTTAAGTATGTTTCAAAGTACAAGCGATGTCCG 1282
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GGATTTGTTTTCTGCTACTCATGCGTATTTAAGTATGTTTCAAAGTACAAGCGATGTCCG 1145
Query 1283 GTGACATTGATTCCAGCCAGCGTTGA-TCAGATTAGGAGGTTGTTTCAGGACACTTAGGA 1341
|||||||||||||| ||||| || || ||||||||||||||||||||| |||||||| |
Sbjct 1146 GTGACATTGATTCCGGCCAGTGT-GAATCAGATTAGGAGGTTGTTTCATGACACTTAATA 1204
Query 1342 CCAGTCTATTTAATGGTT 1359
||| |||||||||| |||
Sbjct 1205 CCAATCTATTTAATTGTT 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5