BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04470.1
Length=2909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927990 jgi|Araly1|927990|scaffold_300447.1 3319 0.0
Ahg479907 jgi|Araly1|479907|fgenesh2_kg.3__2608__AT3G24210.1 196 6e-49
> Ahg927990 jgi|Araly1|927990|scaffold_300447.1
Length=1964
Score = 3319 bits (1797), Expect = 0.0
Identities = 1902/1953 (97%), Gaps = 5/1953 (0%)
Strand=Plus/Plus
Query 765 AGTGAGTGTTGTGGATAAACAATGGAAGATTACTCCAAGTATACTCATAGTCCTGCTCAT 824
||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AGTGAGTGTTGTGGA-AAATAATGGAAGATTACTCCAAGTATACTCACAGTCCTGCTCAT 59
Query 825 TTAGCTGTTGTGCTTCGGGATCATGCTGCTCTTAGGCGAATTGTTTCGGATCTTCCTCGG 884
||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TTAGCGGTTGTGCTACGTGATCATGCGGCTCTTAGGCGAATTGTTTCGGATCTTCCTCGG 119
Query 885 TTAGCTAAGGCTGGTGAAGTTACTACTGAGGCTGAGTCTATGGAGTCTG-AGTCTCGTGC 943
|||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||
Sbjct 120 TTAGCTAAGGCTGGTGAAGTTACTACAGAGGCTGAGTCTATGGAGTCTGAAG-CTCATGC 178
Query 944 TGATTCTGTTTCAGCTGTCATTGATCGCCGTGATGTTCCTGGTCGTGAAACTCCATTGCA 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGATTCTGTTTCAGCTGTCATTGATCGCCGTGATGTTCCTGGTCGTGAAACTCCATTGCA 238
Query 1004 TCTCGCTGTTCGTCTTAGAGATCCTGTCTCTGCTGAGATTTTGATGTCTGCTGGTGCCGA 1063
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 TCTCTCTGTTCGTCTTAGAGATCCTGTCTCTGCTGAGATTTTGATGTCTGCTGGTGCGGA 298
Query 1064 TTGGAGTCTACAGAACGAGAATGGTTGGAGTGCGTTACAAGAAGCGGTTTGCACAAGAGA 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 TTGGAGTCTACAGAACGAGAATGGTTGGAGTGCGTTACAAGAAGCGGTTTGCACTAGAGA 358
Query 1124 AGAGGCCATCGCCATGATAATTGCTCGGCATTACCAGCCTCTTGCTTGGGCTAAATGGTG 1183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAGGCCATCGCCATGATCATTGCTCGGCATTACCAGCCTCTTGCTTGGGCTAAATGGTG 418
Query 1184 TAGGAGACTTCCTCGGATCATTGCGTCAGCATCTCGGATCCGTGATTTTTACATGGAGAT 1243
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 419 CAGGAGACTTCCTCGGATCATTGCATCAGCATCTCGAATCCGTGATTTTTACATGGAGAT 478
Query 1244 CACTTTTCATTTTGAGAGCTCGGTCATTCCGTTTATTGGCCGCATTGCTCCTTCCGATAC 1303
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 479 CACTTTTCATTTTGAGAGCTCCGTAATTCCGTTTATTGGCCGCATTGCTCCTTCCGATAC 538
Query 1304 TTACAGGATATGGAAACGTGGTTCAAATCTCCGTGCTGATATGACTCTTGCTGGTTTTGA 1363
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 539 TTACAGGATATGGAAACGTGGTTCGAATCTCCGTGCTGATATGACTCTTGCCGGTTTTGA 598
Query 1364 TGGGTTTAAAATCCAACGGTCAGATCAAACATTTCTCTTTCTAGGGGATGGTTACTCGTC 1423
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGGGTTTAAAATCCAGCGGTCAGATCAAACATTTCTCTTTCTAGGGGATGGTTACTCGTC 658
Query 1424 TGAAGATGGTAAAATGTCCCTATCTCCGGGCTCGTTGATTGTTCTTTCGCATAAGGAAAA 1483
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAAGACGGTAAAATGTCCCTATCTCCGGGCTCGTTGATTGTTCTTTCGCATAAGGAAAA 718
Query 1484 AGAAATGACAAATGCTTTGGAAGGAGCTGGTGCGCAACCAACAGATGCTGAGGTTGCTCA 1543
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 719 AGAAATGACAAATGCTTTGGAAGGAGCTGGTGCGCAACCGACAGATGCTGAGGTTGCTCA 778
Query 1544 TGAAGTGGCTTTGATGTCTCAGACTAATATGTATAGACCTGGAATCGATGTAACTCAAGC 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGAAGTGGCTTTGATGTCTCAGACTAATATGTATAGACCTGGAATCGATGTAACTCAAGC 838
Query 1604 TGAGCTGGTTTCTCATTTGAATTGGAGACGGCAAGAGAGAACCGAGATGGTTGGGAATTG 1663
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 839 TGAGCTGGTTTCTCATTTGAATTGGAGACGGCAAGAGAGAACTGAGATGGTTGGGAATTG 898
Query 1664 GAAAGCAAAAGTTTACGATATGCTTCATGTGATGGTGAGTGTCAAATCTAGACGGGTTCC 1723
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 899 GAAAGCAAAAGTTTACGATATGCTTCATGTGATGGTGAGTGTGAAATCTAGACGGG-TCC 957
Query 1724 C-GGTGCAATGACTGATGAAGAGCTCTTTGCGGTTGATGAAGAGCGAACTGCTGTAACAA 1782
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 CTGGTGCAATGACTGATGAAGAGCTCTTTGCGGTTGATGAAGAGCGAACTGCTGCAACAA 1017
Query 1783 ATGGTGCAGAGACCGACGGCTTTGAAGACGTACTAACACCTGAGGAAAGACTCCAATTGA 1842
| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 ACGGTGCAGAGACCAATGGCTTTGAAGACGTATTAACACCTGAGGAAAGACTCCAATTGA 1077
Query 1843 ATTCCGCGCTTCAGACTGGAAATTCCGATGCCATTGAAGATGAAGAGTGTGAAGTTACTG 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATTCCGCGCTTCAGACTGGAAATTCCGATGCCATTGAAGATGAAGAGTGTGAAGTTACTG 1137
Query 1903 ATCAACAGGAAAACGGAGCTCTCAAGGATAAGAAGGGCTGGTTTGGTTGGAATAAGAAAG 1962
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATCACCAGGAAAACGGAGCTCTCAAGGATAAGAAGGGCTGGTTTGGTTGGAATAAGAAAG 1197
Query 1963 GCTCAAACACTGAAGATACAAAGCTCAAGAAAGGCTCAAAGTCTGCGCCAGAAGACGGGA 2022
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1198 GCTCAAACACTGAAGATACAAAGCTCAAGAAAGGCTCAAAGTCTGCGCCTGAAGACGGGA 1257
Query 2023 ACCAGAAAGGGAAAAGCCAGAAATCTTCGATGGTATCTGATCATGCAAATGAGGATCATG 2082
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1258 ATCAGAAAGGGAAAAGCCAGAGATCTTCGATGGTATCTGATCATGCAAATGAGGATCTTG 1317
Query 2083 GAGACGCaaagaaaggaaaggagaagaagaagaagaagaaagGTGTTGCCGGAGATGAGG 2142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GAGACGCAAAGAAAGGAAAGGAGAAGAAGAAGAAGAAGAAAGGTGTTGCCGGAGATGAGG 1377
Query 2143 TTAAGCGTGAGAGTGAATACAAGAAAGGACTAAGACCGGTCTTGTGGTTAACACCGGACT 2202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTAAGCGTGAGAGTGAATACAAGAAAGGACTAAGACCGGTCTTGTGGTTAACACCGGACT 1437
Query 2203 TTCCTCTTACGACAGACGAGCTTTTACCGCTCCTTGACATATTAGCTAACAAGGTTAAAG 2262
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1438 TTCCTCTTACGACAGACGAGCTTTTACCGCTCCTCGACATATTAGCTAACAAGGTTAAAG 1497
Query 2263 CCGTTAGGAGACTCAGAGAGCTTCTCACAACTAAACTTCCGCTAGGCACATTCCCTGTAA 2322
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1498 CCGTTAGGAGACTCAGAGAGCTTCTCACAACTAAACTTCCACTAGGCACATTCCCTGTAA 1557
Query 2323 AGCTCGCCATTCCCATTATTCCTACGGTTCGAGTTGTTGTTACTTTCACCAAATTTGAAG 2382
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1558 AGCTCGCCATTCCCATTATTCCAACGGTTCGAGTTGTTGTTACTTTCACAAAATTTGAAG 1617
Query 2383 AACTTCAGGCAGCTGAGGAGGAGTTCTCAACACCTCCTTCTAGTCCGGTATTTCATGATG 2442
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1618 AGCTTCAGGCGGCTGAGGAGGAGTTCTCAACGCCTCCTTCTAGTCCGGTATTTCATGATG 1677
Query 2443 CAAAGTCGTCTTCTTCAGAGAACTCATCACCATCATGGATCTCATGGATGAGAAGTGGCA 2502
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CAAAGTCTTCTTCTTCAGAGAACTCATCACCATCATGGATCTCATGGATGAGAAGTGGCA 1737
Query 2503 AATCAAGTGACAATGATAGTAACCGTTACAAAGACGAGGCTGACCCTTTCTTGATACCTT 2562
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1738 AATCAAGTGACAATGATAGTAACCGTTACAAAGACGAGGTTGACCCTTTCTTGATACCTT 1797
Query 2563 CAGATTACAAATGGATCGATTCAGCTGAGAAGAAACGTCGAATGAAAGCTAAGAAAGCTA 2622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CAGATTACAAATGGATCGATTCAGCTGAGAAGAAACGTCGAATGAAAGCTAAGAAAGCTA 1857
Query 2623 AGAGCAGGAGGAAGAAACAAGCGGCTACAAAAGCCGCTGGTGCTAGTGACTCGGGTACCC 2682
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 AGAGCAAGAGGAAGAAACAGGCGGCTACAAAAGCCGCTGGTGCTAGTGACTCGGGTACCC 1917
Query 2683 GTTCAAATCATGTAGCCGAAGAATGATGAGTCC 2715
|||||||||| ||||||||||||||||||||||
Sbjct 1918 GTTCAAATCAAGTAGCCGAAGAATGATGAGTCC 1950
> Ahg479907 jgi|Araly1|479907|fgenesh2_kg.3__2608__AT3G24210.1
Length=2127
Score = 196 bits (106), Expect = 6e-49
Identities = 292/380 (77%), Gaps = 20/380 (5%)
Strand=Plus/Plus
Query 1045 TGAT-GTCTGCTGGTGCCGATTGGAGTCTACAGAACGAGAATGGTTGGAGTGCGTTACAA 1103
|||| || |||||| || ||||||| | | ||||||||| | ||||||| ||||| |||
Sbjct 461 TGATGGT-TGCTGGAGCTGATTGGACTTTGCAGAACGAGGACGGTTGGAACGCGTTGCAA 519
Query 1104 GAAGCGGTTTGCACAAGAGAAGAGGCCATCGCCATGATAATTGCT-CGGCATTACCAGCC 1162
||||| ||||||| ||| ||||||| || || ||||| || | | |||||||| |||||
Sbjct 520 GAAGCTGTTTGCAGTAGACAAGAGGCGATAGCGATGATTATAG-TCCGGCATTATCAGCC 578
Query 1163 TCTTGCTTGGGCTAAATGGTGTAGGAGACTTCCTCGGATCATTGCGT-CA--GCATCTCG 1219
|||||||||||||||||||||||||||||| ||||| | || || | || | | |
Sbjct 579 TCTTGCTTGGGCTAAATGGTGTAGGAGACTACCTCGTTTGATAGC-TACAATG-AG-TAA 635
Query 1220 GATCCGTGATTTTTACATGGAGATCACTTTTCATTTTGAGAGCTCGGTCATTCCGTTTAT 1279
||| ||||||||| ||||||| | |||||||||||||||||| || | || ||| |
Sbjct 636 GATGAAAGATTTTTACTTGGAGATGAGTTTTCATTTTGAGAGCTCTGTTGTGCCTTTTGT 695
Query 1280 -TGGCCGCATTGCTCCTTCCGATACTTACA-GGATATGGAAACGTGGT-TCAAATCTCCG 1336
| | |||| || || |||||||||| || | |||||| |||| || ||| | |
Sbjct 696 ATCTAAGG-TTGCGCCGTCTGATACTTACAAGGTT-TGGAAA-GTGGGATCGAATTTGAG 752
Query 1337 TGCTGATATGACTCTTGCTGGTTTTGATGGGTTTAAA-ATCCAACGGTCAGATCAAAC-A 1394
|| ||||||||| | |||||||| ||||| ||| || || |||||||| ||||| | |
Sbjct 753 AGCGGATATGACTATGGCTGGTTTCGATGG-TTTCAAGATTCAACGGTCTGATCAGAGTA 811
Query 1395 TTTCTCTTTCTAGGGGATGG 1414
||| | ||||| || |||||
Sbjct 812 TTT-TGTTTCTTGGTGATGG 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109814176335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5