BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04480.1
Length=2592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477703 jgi|Araly1|477703|fgenesh2_kg.3__404__AT3G04480.1 3723 0.0
> Ahg477703 jgi|Araly1|477703|fgenesh2_kg.3__404__AT3G04480.1
Length=2450
Score = 3723 bits (2016), Expect = 0.0
Identities = 2191/2274 (96%), Gaps = 18/2274 (1%)
Strand=Plus/Plus
Query 66 agagagagaAAGATGAAGGTCGTGGCTTTAGTGAGTGGAGGCAAAGATAGCTGTTATGCT 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 AGAGAGAGAAAGATGAAGGTCGTGGCTTTAGTGAGTGGAGGCAAAGATAGCTGTTATGCT 110
Query 126 ATGATGAAGTGTATCCAATACGGTCACGAGATCGTGGCATTGGCTAATTTGTTGCCGGTT 185
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 ATGATGAAGTGTATCCACTACGGTCACGAGATCGTGGCATTGGCTAATTTGTTGCCGGTT 170
Query 186 GATGATTCCGTCGATGAATTGGACAGCTATATGTATCAAACTGTAGGCCACCAGATTTTA 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 171 GATGATTCCGTCGATGAATTGGACAGCTATATGTATCAAACTGTAGGCCACCAGATTATA 230
Query 246 GTGGGTTATGCAGAATGTATGAATGTGCCATTGTTCAGAAGAAGAATCCGAGGTTCTTCA 305
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 231 GTGGGTTATGCAGAATGTATGAATGTGCCATTGTTCAGAAGAAGAATCCGAGGATCTTCA 290
Query 306 AGGCATCAGAAACTTAGCTACCAAATGACTCCAGATGATGAAGTGGAAGATATGTTTGTC 365
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 291 AGGCATCAGAAACTTAGCTACCAAATGACTCCACATGATGAAGTGGAAGATATGTTTGTC 350
Query 366 TTGTTAAGTGAAGTGAAGAGACAGATACCTTCCATCACTGCAGTATCGTCTGGTGCCATT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TTGTTAAGTGAAGTGAAGAGACAGATACCTTCCATCACTGCAGTATCGTCTGGTGCCATT 410
Query 426 GCATCAGACTACCAACGACTGCGTGTGGAGAGTATTTGTTCAAGGTTAGGCCTTGTTTCT 485
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 411 GCATCAGACTACCAACGACTGCGTGTGGAGAGTGTTTGTTCAAGGTTAGGCCTTGTTTCT 470
Query 486 TTGGCATTTTTGTGGAAACAAGATCAGACATTGCTTCTTCAGGACATGATAGCAAATGGG 545
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 471 TTGGCATTTTTGTGGAAACAAGATCAGACATTGCTTCTTCAGGAAATGATAGCAAATGGG 530
Query 546 ATCAAAGCTATTTTAGTCAAGGTCGCGGCAATAGGGTTAGATCCCTCAAAGCATTTAGGG 605
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATAAAAGCTATTTTAGTCAAGGTCGCGGCAATAGGGTTAGATCCCTCAAAGCATTTAGGG 590
Query 606 AAAGACTTAGCCTTCATGGAACCATATCTTTTGAAGTTAAAAGAGAAATATGGAAGTAAT 665
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 591 AAAGACTTAGCCTTCATGGAACCATATCTTTTGAAGTTAAAAGAGAAGTATGGAAGTAAT 650
Query 666 GTTTGCGGGGAAGGAGGAGAATATGAAACTCTGACTCTAGATTGCCCGCTTTTCACTAAT 725
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GTATGCGGTGAAGGAGGAGAATATGAAACTCTGACTCTAGATTGCCCGCTTTTCACTAAT 710
Query 726 GCGAGTATCGTGCTTGATGAATATCAAGTTGTGCTACACTCTCCAGATTCCATTGCACCT 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GCGAGTATCGTGCTTGATGAATATCAAGTTGTGCTACACTCTCCAGATTCCATTGCACCT 770
Query 786 GTTGGTGTTCTTCATCCATCTACGTTCCATCTTGAAAAGAAAGGGAATCCAGACTCCCAT 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 771 GTTGGTGTTCTTCATCCATCTACGTTCCATCTTGAAAAGAAAGGGAATCCAGACTCCAAT 830
Query 846 TCCCCTGAAGAGGAATCAAGTTTAGTGTCTGAGGTACTAGGAGATGGTCCTAACACATCA 905
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TCCCCTGAAGAGGAATCGAGTTTAGTGTCTGAGGTACTAGGAGATGGTCCTAACACATCA 890
Query 906 GATTCTACTCGCCAACGAGATAATGGAATCGTTGATCTAGTTGAACACACAAGTAACAGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GATTCTACTCGCCAACGAGATAATGGAATCGTTGATCTAGTTGAACACACAAGTAACAGA 950
Query 966 CTTCACATATCAAGGGCTGAGAAACACAACACGTTCTCCATCTGCTGCTGGTTGGAAGAT 1025
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 951 CTTCACATATCAAGGACTGAGAAACACAACACATTCTCCATCTGCTGCTGGTTGGAAGAT 1010
Query 1026 TCTAGTGAATCGTCAAAAGGTCTGAAAGAAGATCTCGAGACTGTTCTTACAGAACTTGAA 1085
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TCTAGTGTATCGTCAACAGGTCTGAAAGAAGATCTCGAGACTGTTCTTACAGAACTTGAA 1070
Query 1086 TCCCAGCTTTTAAAACACGGGTATAACTGGCAGCATGTATTGTACATTCATCTATATATC 1145
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1071 TCCCAGCTTTTAAAACGCGGGTATAACTGGCAGCATGTATTGTACATTCATCTTTATATC 1130
Query 1146 TCTGACATGAGTGAATTTGCTGTGGCGAATGAGACATATGTGAAATTTATCACACAAGAG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TCTGACATGAGTGAATTTGCTGTGGCGAATGAGACATATGTGAAATTTATCACACAAGAG 1190
Query 1206 AAGTGCCCTTTCGGTGTTCCTTCCCGTAGTACAATAGAACTTCCTTTGGTACAAGCGGGT 1265
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1191 AAGTGCCCTTTCGGTGTTCCTTCCCGTAGTACAATAGAACTTCCTTTGGTACAAGCAGAT 1250
Query 1266 CTTGGAAAAGCTTACATCGAGGTTTTAGTCGCGAATGACGAAAGCAAAAGAGTTCTCCAT 1325
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1251 CTTGGAAAAGCTTACATCGAGGTTTTAGTTGCGAATGACGAAAGCAAAAGAGTTCTCCAT 1310
Query 1326 GTACAAAGTATATCTTGCTGGGCACCTAGCTGCATTGGACCTTACAGTCAGGCCACTTTG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GTACAAAGTATATCTTGCTGGGCACCTAGCTGCATTGGACCTTACAGTCAGGCCACTTTG 1370
Query 1386 CACCAGAGTGTTCTTCACATGGCTGGACAATTAGGACTTGACCCTCCCACGATGAATCTT 1445
||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1371 CACAAAAGTGTTCTTCACATGGCTGGACAATTAGGACTTGACCCCCCCACGATGAATCTT 1430
Query 1446 C-AAACCGAAGGCGCAATTGCTGAGCTAAATCAAGCATTGACGAACAGTGAAGCAATAGC 1504
| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1431 CGAAAC-GAAGGCGCAATTGCTGAGCTAAATCAAGCATTGACGAACAGTGAGGCAATAGC 1489
Query 1505 AGAGTCTTTTAACTGCTCAATCTCCTCATCAGCTATACTCTTTGTGGTTTTCTGTTCAGC 1564
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1490 ACAGTCTTTTAACTGCTCAATCTCTTCATCAGCTATACTCTTTGTGGTTTTCTGTTCAGC 1549
Query 1565 ACGCACAAAACAATCAGAGAGGAACCAACTTCATGAAAAGTTTGTTACTTTCTTGGGTTT 1624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1550 ACGCACAAAACAATCAGAGAGGAACCAACTTCATGAAAAGTTTGTTACTTTCTTGGATTT 1609
Query 1625 GGCAAAGTCTTCTCGGAGGGTACAGAATGTCCTAGATCCTATGTTCCTTTACATTCTTGT 1684
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 1610 GGCAAAGTCTTCTCGGAGGGTACGGAATGTCCTCGATCCTATGTTCCTTTACATCCTTGT 1669
Query 1685 CCCCGATCTTCCGAAAAGGGCCCTTGTTGAAGTGAAACCTATTTTATACGTGGAAGAAGA 1744
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1670 CCCCGATCTTCCGAAAAGGGCTCTTGTTGAAGTGAAACCTATTTTATACGTGGAAGAAGA 1729
Query 1745 TACAGACACCGAAGATGAAACCAGCCGAGATCAATCGGGTGAAGGACATTACAGTATTTG 1804
||| || || ||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1730 TACGGAAACTGAAGATGAAACCAGCCGAGATCAATCGAGTGAAGGAGATTACAGTTTTTG 1789
Query 1805 GGGATATAAGCCAGAGAAATGGCACCAAGATTGTGTGCAGAAACGAGTTGTTGATGGGAA 1864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GGGATATAAGCCAGAGAAATGGCACCAAGATTGTGTGCAGAAACGAGTTGTTGATGGGAA 1849
Query 1865 AGTGTGTGTGGCCGTTCTCTCTATCTCAGCTGAACTAATGAGGAAACTTCAGGGAGAAGA 1924
| |||||||| | |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1850 AATGTGTGTGACTGTTCTCTCAATCTCAGCCGAACTAATGAGGAAACTTCAGGGAGAAGA 1909
Query 1925 AGAAGAACTGGAGATAGTATCAAGATTCTGTGTATATCTTCTCAACAAAACCTTGTCTGA 1984
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 AGAACAACTGGAGAGAGTATCAAGATTCTGTGTATATCTTCTCAACAAAACCTTGTCTGA 1969
Query 1985 AAATTCGTTTTCTTGGCAAGACACTACGAGCTTAAGAATACACTTCTCTACTAGTATTGG 2044
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1970 AAATTCATTTTCTTGGCAAGACACGACGAGCTTAAGAATACACTTCTCTACTAGTCTTGG 2029
Query 2045 TGTGTCCGTAGAGAGATTATCGGCCATTTTTGTGTCTGCGTTCAGAGAGCTTAACGAGAT 2104
|||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 2030 TGTGTCCGTAGAGACATTATCGGACATTTTTGCGTCTGCATTCAGAGAGCTTAACGAGAT 2089
Query 2105 GAGTGATGGAGTAAAAAT-GGACAGTTTGAAAGAACCTATCTTCAATCTCGTCCCTGTCC 2163
||||| | ||||||| | || ||| | ||||||| |||||||||||||||||||||||
Sbjct 2090 GAGTG--G-AGTAAAAGTCGG-CAGCTCGAAAGAAGATATCTTCAATCTCGTCCCTGTCC 2145
Query 2164 TTGGTGCTGGAAACTCTTCTGCTTCACTCGACAACATAATCACCTGTGAACTATTTGCCC 2223
| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 2146 TAGGTGCTGGAAACTCTTGTGCTCCACTCGACAACATAATCACCTGTGAACTATTTGCCC 2205
Query 2224 TAAGGTCGTAGCTTTCCTGTTTCTCAAGGAACACAAAGGTTTACTTACTTGATCTTGGGG 2283
||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2206 TAAGGTCGTAGCTGTCCTGTTTCACAAGGAACACAAAGGTTTACTTTCTTGATCTTGGGC 2265
Query 2284 TCATCAAGGTCATCAAGGGCCATTTGATTTTGCAATGGGTAAGCCAAATTGAAC 2337
||||||||| | | || ||| |||| |||||||||| ||||||||||||
Sbjct 2266 TCATCAAGGGC--C--GG----TTT-ATTT-GCAATGGGTA-GCCAAATTGAAC 2308
Score = 185 bits (100), Expect = 1e-45
Identities = 133/148 (90%), Gaps = 6/148 (4%)
Strand=Plus/Plus
Query 2374 tttttGAATACCTTTTCCATTTGCGAAAGAACAACACGTAGTTGTTTTGTTCCAAATGGA 2433
|||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2309 TTTTGGAATACCTTTTCCATTTGCGAAAGAACAACATGTAGTTGTTTTGTTCTAAATGGA 2368
Query 2434 AACGGCACGATGTTTGTTATTCttttcttttctttttttCCAGTTGGAGGTGCAAAGACT 2493
|| ||||||||||||||| |||| || |||| || ||| | | |||||||||||||||||
Sbjct 2369 AATGGCACGATGTTTGTTTTTCTCTT-TTTT-TTGTTT-CAA-TTGGAGGTGCAAAGACT 2424
Query 2494 GATTACTTTTTGCCAAACCCAGTCCAAA 2521
| ||||||| |||||||||||||||||
Sbjct 2425 GTTTACTTT--GCCAAACCCAGTCCAAA 2450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97739568670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5