BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04485.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935358 jgi|Araly1|935358|scaffold_403346.1 209 2e-53
Ahg903265 jgi|Araly1|903265|Al_scaffold_0003_393 189 3e-47
Ahg942506 jgi|Araly1|942506|scaffold_603050.1 132 5e-30
Ahg927927 jgi|Araly1|927927|scaffold_300384.1 58.4 9e-08
> Ahg935358 jgi|Araly1|935358|scaffold_403346.1
Length=1433
Score = 209 bits (113), Expect = 2e-53
Identities = 183/214 (86%), Gaps = 16/214 (7%)
Strand=Plus/Plus
Query 486 AGGCACTTCACCGAAGGTCG-TG--AACATCAAACG-ATATTTTTTACTTCTTGGTGACA 541
|||||||||||| ||||| | || ||||||||| | ||| ||||||||||| ||| |||
Sbjct 1232 AGGCACTTCACCAAAGGTTGATGTAAACATCAAA-GAATA-TTTTTACTTCTCGGTAACA 1289
Query 542 GGGTATGTGTTAGGACTTGTTCCAGCTCAGACCAGCTCTATGCTCGCTTGTTGGAGTTGT 601
| |||| ||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 1290 AGATATGGGTTAGGACTTGTTCCAGCT-------G-T-T-TGCTCGCTTGTTGGAGTTGT 1339
Query 602 TGTAACATATTTTATGGATCTCCATAGCACAATTCTATAGCCTTTGTGTCAACCGCTATT 661
|||||||||||||||||| ||| |||||||||||||| ||||| |||| ||||| ||| |
Sbjct 1340 TGTAACATATTTTATGGAACTCGATAGCACAATTCTAAAGCCTCTGTGCCAACCACTACT 1399
Query 662 ACTAGAATGAACAGAAGGAAGATACGCAACGCTT 695
||||||||||| ||||||||||||||||||||||
Sbjct 1400 ACTAGAATGAAAAGAAGGAAGATACGCAACGCTT 1433
> Ahg903265 jgi|Araly1|903265|Al_scaffold_0003_393
Length=294
Score = 189 bits (102), Expect = 3e-47
Identities = 162/188 (86%), Gaps = 16/188 (9%)
Strand=Plus/Plus
Query 488 GCACTTCACCGAAGGTCG-TG--AACATCAAACGATATTTTTTACTTCTTGGTGACAGGG 544
|||||||||| ||||||| || |||||||||||||| ||||||||||| ||||||| |
Sbjct 119 GCACTTCACCAAAGGTCGATGTAAACATCAAACGATA-TTTTTACTTCTCGGTGACAAGA 177
Query 545 TATGTGTTAGGACTTGTTCCAGCTCAGACCAGCTCTATGCTCGCTTGTTGGAGTTGTTGT 604
|||| ||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 178 TATGGGTTAGGACTTG-T-----T----CCAGCTCTATGCTCGCTTGTTGGAGTTGTTGT 227
Query 605 AACATATTTTATGGATCTCCATAGCACAATTCTATAGCCTT-TGTGTCAACCGCTATTAC 663
||||||||||||||| ||| |||||||||||||| ||| || |||||||| ||||| |||
Sbjct 228 AACATATTTTATGGAACTCAATAGCACAATTCTAAAGC-TTCTGTGTCAATCGCTACTAC 286
Query 664 TAGAATGA 671
||||||||
Sbjct 287 TAGAATGA 294
> Ahg942506 jgi|Araly1|942506|scaffold_603050.1
Length=247
Score = 132 bits (71), Expect = 5e-30
Identities = 127/153 (83%), Gaps = 7/153 (5%)
Strand=Plus/Plus
Query 74 ATTCAAATCACTTAATG-CTACCTGAAGCTCTCTTTCTCCATT-AGCTTCGTTGCCCAAA 131
|||||||||| || ||| | ||||||||||||||||||||||| | ||| ||||||||||
Sbjct 49 ATTCAAATCATTTTATGTC-ACCTGAAGCTCTCTTTCTCCATTCA-CTTGGTTGCCCAAA 106
Query 132 TCCTGTTGACCTGACTCATCTTCTGGTTCGTTACCGGAGCACGGTCGAGGTACTACCATG 191
|||| ||| ||| |||||| | | |||||||||||||||| ||||| ||| | ||
Sbjct 107 TCCTCTTGGCCTCACTCAT-T-CAC-TTCGTTACCGGAGCACACTCGAGTTACCATGTTG 163
Query 192 TGAGCTAGATTTGAATAATGTAGAAGCCATCAA 224
||| ||| | ||||||||||||| |||||||||
Sbjct 164 TGAACTACAGTTGAATAATGTAGCAGCCATCAA 196
> Ahg927927 jgi|Araly1|927927|scaffold_300384.1
Length=257
Score = 58.4 bits (31), Expect = 9e-08
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 353 AGCTGATCAGTACTTGGATCAGAAGATCTCA 383
|||||||||||||||||||||||||||||||
Sbjct 110 AGCTGATCAGTACTTGGATCAGAAGATCTCA 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5