BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04500.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477706 jgi|Araly1|477706|fgenesh2_kg.3__407__AT3G04500.1 1336 0.0
> Ahg477706 jgi|Araly1|477706|fgenesh2_kg.3__407__AT3G04500.1
Length=974
Score = 1336 bits (723), Expect = 0.0
Identities = 786/817 (96%), Gaps = 2/817 (0%)
Strand=Plus/Plus
Query 38 CGATTCGGCGATTT-GCTTCTCCGATGTCAATCCCACCATCTTCAGGTTCTTCTTCTTCA 96
|||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 CGATTCGGCG-TTTAGCTTCTCCGATGTCAATCCCACCATCTTCAGCTTCTTCTTCTTCA 59
Query 97 TCTTCCTCGTCTCAGTACACATACGCAGCTAATTCTTACTATTCCGCTCCGTATCAGCCT 156
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TCTTCCTCGTCTCAGTACACATACGCTGCTAATTCTTACTATTCCGCTCCGTATCAGCCT 119
Query 157 CCACAGCCTTACGCGGCGGCGCCTTCGCCTGCTGTACCGGCGCCTGTGGCATCCATTCCC 216
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 CCACAGCCTTACGCGGCGGCGCCTTCGCCTGCTGTACCGGCGCCGGTGGCATCCATTCCC 179
Query 217 GGAGCTACGGTCTATCCTCAGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAG 276
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 180 GGAGCTACGGTCTATCCTCAGCCTGTTGGACCGGTTCCTGCCGTATACGCTTACCCACAG 239
Query 277 TACCAACAGGCACATCAATTGTTCCAAAGAGATGCACAGACAATTACACCAGAAGCTCTT 336
||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 240 TACCAGCAGGCACATCAATTGTTTCAGAGAGATGCACAGACAATTACGCCAGAAGCTCTT 299
Query 337 GAGAATGTAAAAGCTGCTTTGGCAAGTAGTGAAACCGAACACAAAGCAGAAACTAAAAAG 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGAATGTAAAAGCTGCTTTGGCAAGTAGTGAAACCGAACACAAAGCAGAAACTAAAAAG 359
Query 397 AGAGCCATTCCTCGTAAAGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGG 456
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 360 AGAGCCATTCCTCGTAAAGCTGCTGGACAGTCTTGGGAGGATCCTACTCTATCAGAGTGG 419
Query 457 CCAGAAAATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGTT 516
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 CCAGAAAATGACTATCGCCTGTTCTGTGGTGATCTTGGGAATGAAGTGAATGATGATGTT 479
Query 517 CTTTCCAAAGCATTTGCTAGATTCCCCACCTTCAATATGGCCAAGGTCATTAGAGATAAG 576
|||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTTCCAAGGCATTTACTCGATTCCCCACCTTCAATATGGCCAAGGTCATTAGAGATAAG 539
Query 577 CGGACTGGTAAAACCAAGGGTTATGGGTTTGTGAGTTTCTTAAATCCTGCGGATCTAGCA 636
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 CGGACTGGTAAAACCAAGGGTTATGGGTTTGTGAGTTTCTCAAATCCTGCGGATCTAGCA 599
Query 637 GCAGCCTTAAAAGAAATGAATGGTAAGTATGTTGGAAATCGTCCGATAAAACTACGAAAG 696
|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 600 GCAGCCCTAAAAGAAATGAATGGTAAGTATGTTGGAAACCGTCCTATAAAACTACGAAAG 659
Query 697 AGTAGCTGGAAAGAGAGAACAGATCAGGAGGCTGCTGAAAGACAAAAGCATCACAGCAAT 756
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCAGCTGGAAAGAGAGGACAGACCAGGAGGCTGCTGAAAGACAAAAGCATCACAGCAAT 719
Query 757 AAGAAGCAAAAAACTGTGAAGAAGAGCATACTTCACAAGTGACGATCTCTTTTATTTTTG 816
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 AAGAAGCAAAAAACTATGAAGAAGAGCGTACTTCACAAGTGACGATCTCTTTTATTTTTG 779
Query 817 TGGCTTAAAATTTCCAAACCTGTTACTCATAAATATA 853
|||||| || |||| |||||||||||||| |||||||
Sbjct 780 TGGCTTTAACTTTCTAAACCTGTTACTCAAAAATATA 816
Score = 165 bits (89), Expect = 6e-40
Identities = 121/135 (90%), Gaps = 7/135 (5%)
Strand=Plus/Plus
Query 925 TTTAGCCCCAACCGGTGGTATTTACTTTATGAAAACGTGTGTCCACAATAGGCTCGAGCA 984
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 843 TTTAGCCCCAACCGGTGGTATTTACTTTATGAAAACGTGTTTCCTTAATAAGCTCGAGCA 902
Query 985 CAAACTTTTCTTACATCTTTTTCA-CTCCATTAAAACGTTCAAGTGGTCTGAGCATA-T- 1041
||||||| |||||||||||||| | ||||||||| || ||||||||||||||||| |
Sbjct 903 CAAACTTCTCTTACATCTTTTT-AGCTCCATTAA--CGACCAAGTGGTCTGAGCATAATA 959
Query 1042 T-ACAAGAAAATCAA 1055
| |||||||||||||
Sbjct 960 TTACAAGAAAATCAA 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5