BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04510.1
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477707 jgi|Araly1|477707|fgenesh2_kg.3__408__AT3G04510.1 1755 0.0
Ahg489650 jgi|Araly1|489650|fgenesh2_kg.6__2784__AT5G28490.1 420 1e-116
> Ahg477707 jgi|Araly1|477707|fgenesh2_kg.3__408__AT3G04510.1
Length=1304
Score = 1755 bits (950), Expect = 0.0
Identities = 1227/1348 (91%), Gaps = 69/1348 (5%)
Strand=Plus/Plus
Query 1 GTGTCTTAAATGGAAAATATATGATTTCTGATGATCAGTCTCACGACTCTCATCTCTTTC 60
||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GTGTCTTTAATGGAAAATTTATGATTTCTGATGATCAGTCTCACGA-TCTCATCTCTTTC 59
Query 61 TCTTTCTCTATAAATGACCTATTATGATGTTTATGCAGCTATATATATGGACATTTGTGT 120
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 60 TCTTTCTCTATAAATGACCTATTATGATGTTTTTGCAGCTATATATACGGACATTTGTGT 119
Query 121 CTGTATTTTTCTATCCATCTTCTCATTCTATAGTagaaaagaggaaaaacacaaaagaca 180
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 C--TATTTTTCTATCCATCTTCTCATTCAATAGTAGAAAAGAGGAAAAACACAAAAGACA 177
Query 181 acagtagaaaaggagaaagaaagaaaaaaTCTCACTTTGATTTCTTCTACTTATATCTCT 240
||||||||||| | | |||||| ||| ||| || ||| | || ||| | |||| |
Sbjct 178 ACAGTAGAAAA-G-G--AGAAAG--AAATTCT-AC-TTG-TATC-TCT-C----ATCT-T 221
Query 241 CATCTTGCAAAAAAGCAAGAGGTCTCTTCTTATTTTGCAGGTTGTTCCTCTTTGCCTCAC 300
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GAAATTAAAAAAAAGCAAGAGGTCTCTTCTTATTTTGCAGGTTGTTCCTCTTTGCCTCAC 281
Query 301 CATATTTG---AACA--A-C--ATCATCATCACTGAATCTATCCTTTTTTGTAGCACCTA 352
||| |||| |||| | | ||||||||||||||||||||||||||||| ||||||||
Sbjct 282 CATTTTTGAACAACATCATCTGATCATCATCACTGAATCTATCCTTTTTTGAAGCACCTA 341
Query 353 CCTCACCACTTTGCAGTACAAGGAAGTAGCCAAGTGC-TAATTCTATCTCTCt-ttttag 410
|||||||||||||||||||||||||||| |||||| | | ||||||||||||| |||| |
Sbjct 342 CCTCACCACTTTGCAGTACAAGGAAGTATCCAAGT-CTTCATTCTATCTCTCTCTTTT-G 399
Query 411 ttatttattatatatatcctttaaccagaaaaagtta--t--ttattataaataacttaa 466
||| | |||| |||| |||||||||| ||||||||| | ||||||||||||||| ||
Sbjct 400 TTA-CT-TTAT-TATACCCTTTAACCAAAAAAAGTTATTTAATTATTATAAATAACTAAA 456
Query 467 aaCCTAATCTTTGCCCTAAATCACTC-AACTCGATCTGGAGAAAGAACCCTAATTTGGAA 525
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct 457 AACCTAATCTTTGCCCTAAATCACTCAAACTCGATCTGGTGAAAGAACCCTAATTTAGAA 516
Query 526 ACATATCTAAAAAGCTATGGATTTGATCTCTCAAAACCACAACAACAGAAACCCTAATAC 585
|| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 517 AC--ATCTAAAAAGCTATGGATTTGATCTCTCAAAACCACCACAGCAGAAACCCTAATAC 574
Query 586 CAGTCTCTCGACGCAAACCCCTTCTTCCTTTTCTTCTCCACCTTCCTCTAGCCGCTACGA 645
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 575 CAGTCTCTCGACGCAAACTCCTTCTTCCTTTTCTTCTCCACCATCCTCTAGCCGCTACGA 634
Query 646 GAACCAGAAACGCCGTGACTGGAACACTTTCTGCCAATACCTCAGAAACCACCATCCACC 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 635 GAACCAGAAACGCCGTGACTGGAACACTTTCTGCCAATACCTCAGAAACCACCATCCGCC 694
Query 706 GCTCTCTCTAGCTTCTTGCAGTGGCGCACACGTCCTCGATTTTCTGCGTTACCTTGACCA 765
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 695 GCTCTCTCTAGCGTCTTGCAGCGGTGCACACGTCCTCGATTTTCTGCGTTACCTTGACCA 754
Query 766 ATTCGGCAAAACCAAAGTCCACCACCAAAACTGCGCCTTCTTTGGCCTCCCAAATCCACC 825
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GTTCGGCAAAACCAAAGTCCACCACCAAAACTGCGCCTTCTTTGGCCTCCCAAATCCACC 814
Query 826 GGCTCCTTGTCCTTGTCCTCTCCGACAAGCCTGGGGCTCACTCGACGCCCTCATTGGTCG 885
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GGCCCCTTGTCCTTGTCCTCTCCGACAAGCCTGGGGCTCACTCGACGCCCTCATTGGTCG 874
Query 886 TCTCCGTGCAGCCTACGAGGAGAACGGTGGCGCTCCCGAGACTAGCCCTTTTGGCTCACG 945
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 875 TCTCCGTGCAGCCTACGAGGAGAACGGTGGAGCTCCCGAGTCTAGCCCTTTTGGCTCACG 934
Query 946 GTCCGTCAGGATTTTCCTCAGGGAGGTTAGAGATTTCCAGGCTAAGTCACGTGGTGTTAG 1005
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 935 GTCCGTCAGGATTTTCCTCAGGGAGGTTAGAGATTTCCAGGCTAAATCACGTGGCGTTTG 994
Query 1006 CTATGAGAAGAAGAGGAAAAGGGTCAACAACAAGCAAATAACTCAGTCCCAACCACAGTC 1065
|||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 995 CTATGAGAAGAAGAGGAAAAGGGTCAACAACAAGCAAATAACTCAGTC---------G-C 1044
Query 1066 CCAACCGCCTTTACCCCAGCAGCCACAGCAGGAGCAAGGTCAGTCTATGATGGCTAATTA 1125
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1045 --AACCGCCTTTACCACAGCAGCCGCAGCAGGAGCAAGGTCAGTCTATGATGGCTAATTA 1102
Query 1126 CCACCACGGTGCAACTCAATAATGTCGTATAACTT---TATGTAT--GCTCGCATCTAGC 1180
|||||| ||||||||||| |||| |||||| |||| ||| ||| |||||||||||||
Sbjct 1103 CCACCATGGTGCAACTCATTAATATCGTATTACTTCCATATATATATGCTCGCATCTAGC 1162
Query 1181 TATTTATATCTACGTATC-AACCTTTGTATTCGTGTAACGCAATCCCTATTCTCCTCCAC 1239
|||||||| | || || |||||||||||| |||| | |||||||||||| |||||||
Sbjct 1163 TATTTATA-C---GT-TCCAACCTTTGTATTTGTGTCATGCAATCCCTATT-TCCTCCAT 1216
Query 1240 ---CCACTGTTAATTTATATCATTGTTTCTTAATTAGACCTATTGTTTTGT-TTTTCTTA 1295
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1217 TATCCACTGTTAATTTATATCATTGTTTCTTAATTACACCTATTGTTTTGTCTTTTCTTA 1276
Query 1296 TAATCAATAAATGAAAAGAACTTGGATT 1323
|||||||||| | ||| |||||||||||
Sbjct 1277 TAATCAATAAGTTAAATGAACTTGGATT 1304
> Ahg489650 jgi|Araly1|489650|fgenesh2_kg.6__2784__AT5G28490.1
Length=760
Score = 420 bits (227), Expect = 1e-116
Identities = 353/414 (85%), Gaps = 8/414 (2%)
Strand=Plus/Plus
Query 623 CCACCTTCCTCTAGCCGCTACGAGAACCAGAAACGCCGTGACTGGAACACTTTCTGCCAA 682
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 89 CCACCTTCCTCAAGCCGGTACGAGAACCAGAAACGCCGTGACTGGAACACTTTCTGTCAA 148
Query 683 TACCTCAGAAACCACCATCCACCGCTCTCTCTAGCTTCTTGCAGTGGCGCACACGTCCTC 742
|||||||| ||||||| ||| ||||||||||| | || || || ||||||||||| |||
Sbjct 149 TACCTCAGGAACCACCGTCCTCCGCTCTCTCTCCCGTCGTGTAGCGGCGCACACGTGCTC 208
Query 743 GATTTTCTGCGTTACCTTGACCAATTCGGCAAAACCAAAGTCCACCACCAAAACTGCGCC 802
|| || || || ||||| ||||| ||||| ||||| ||||| |||||||| ||||| |||
Sbjct 209 GAGTTCCTCCGCTACCTCGACCAGTTCGGAAAAACAAAAGTTCACCACCAGAACTGTGCC 268
Query 803 TTCTTTGGCCTCCCAAATCCACCGGCTCCTTGTCCTTGTCCTCTCCGACAAGCCTGGGGC 862
||||| |||||||| || || || |||||||||||||| |||||||| ||||| |||||
Sbjct 269 TTCTTCGGCCTCCCCAACCCTCCTGCTCCTTGTCCTTGCCCTCTCCGGCAAGCTTGGGGA 328
Query 863 TCACTCGACGCCCTCATTGGTCGTCTCCGTGCAGCCTACGAGGAGAACGGTGGCGCTCCC 922
||||||||||| ||||| || || ||||| || ||||||||||||||||||||| ||||
Sbjct 329 TCACTCGACGCTCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGTGGCCCTCCT 388
Query 923 GA-GACTAGCCCTTTTGGCTCACG-GTCCGTCAGGATT-TTCCTCAGGGAGGTTAGAGA- 978
|| | ||| ||| ||||||||||| | |||||||| || |||||| | || || |||||
Sbjct 389 GAAG-CTAACCCATTTGGCTCACGCG-CCGTCAGG-TTATTCCTCCGTGAAGTCAGAGAC 445
Query 979 TTTCCAGGCTAAGTCACGTGGTGTTAGCTATGAGAAGAAGAGGAAAAGGGTCAA 1032
|||| || | ||| | ||||||||||||||||||||||||||||| || |||||
Sbjct 446 TTTCAAGCCAAAG-CTCGTGGTGTTAGCTATGAGAAGAAGAGGAAGAGAGTCAA 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5