BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04520.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928001 jgi|Araly1|928001|scaffold_300458.1 1742 0.0
> Ahg928001 jgi|Araly1|928001|scaffold_300458.1
Length=1102
Score = 1742 bits (943), Expect = 0.0
Identities = 1049/1100 (95%), Gaps = 8/1100 (1%)
Strand=Plus/Plus
Query 75 AGTGAGCCAAATCAAGATGGTGACGCCAACTACAATTAGAACCGTCGATCTCCGCTCCGA 134
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 5 AGTTAGCCAAATCAAGATGGTGACGCCAACTACAATTAGAACCGTGGATCTCCGCTCCGA 64
Query 135 CACGGTGACTAAACCAACAGAGTCAATGCGTTCAGCAATGGCAAACGCGGAAGTAGACGA 194
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 65 CACGGTGACTAAACCAACGGAGTCAATGCGTTCAGCGATGGCAAACGCGGAAGTAGACGA 124
Query 195 CGACGTTTTGGGAAACGATCCAACGGCTCTGCGTTTGGAGAAAGAGGTGGCTGAGATCGC 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CGACGTTTTGGGAAACGATCCAACGGCTCTGCGTTTGGAGAAAGAGGTGGCTGAGATCGC 184
Query 255 TGGAAAAGAGGCGGCGATGTTTGTTCCGTCAGGGA-CAATGGGGAATCTGATAAGCGTGT 313
|||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 185 CGGAAAAGAGGCGGCTATGTTTGTTCCGTC-GGGAACAATGGGGAATCTGATAAGCGTGT 243
Query 314 TGGTCCATTGTGATGAGAGAGGGAGTGAAGTGATTCTTGGAGACGACTCTCACATTCATA 373
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 244 TGGTTCATTGTGATGAGAGAGGGAGTGAAGTGATTCTTGGAGATGACTCTCACATTCATA 303
Query 374 TATATGAAAACGGCGGCGTTTCAAGCCTCGGTGGTGTGCATCCGAGGACGGTGAAGAATG 433
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 304 TATATGAAAACGGCGGCATTTCAAGCCTCGGTGGTGTGCATCCGAGGACGGTGAAGAACG 363
Query 434 AGGAAGACGGTACGATGGAGATTGGTGCTATTGAAGCTGCCGTGAGGAGTCCCAAAGGAG 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGGAAGACGGTACGATGGAGATTGGTGCTATTGAAGCTGCCGTGAGGAGTCCCAAAGGAG 423
Query 494 ATCTCCATCATCCGGTTACTAAGCTTATATGTCTTGAGAATACTCAAGCAAATTGTGGAG 553
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 424 ATCTTCATCATCCGGTTACTAAGCTTATATGTCTTGAGACCACTCAAGCAAATTGTGGAG 483
Query 554 GTAGATGCCTTCCTATAGAATATATAGACAAAGTCGGAGAATTAGCCAAGAAACATGGTT 613
|||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 484 GTAGATGCCTGCCTGTAGATTATATAGACATAGTCGGAGAATTAGCCAAGAAACATGGTT 543
Query 614 TGAAGCTTCACATTGACGGAGCTAGGATTTTCAACGCTTCTGTGGCACTTGGAGTTCCCG 673
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 544 TGAAGCTTCACATTGACGGAGCTCGGATCTTCAACGCTTCTGTGGCACTTGGAGT-CCCG 602
Query 674 -TGAAGAGGATTGTTCAAGCAGCTGATTCTGTCTCGATCTGTTTGTCGAAAGGTATTGGT 732
|||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 603 GTGAAGAGGATTGTTCAAGCAGCTGATTCGGTCTCGATTTGTTTGTCGAAAGGAATAGGT 662
Query 733 GCACCGGTCGGTTCGGTAATCGTGGGAAGCAAGAAGTTCATTACTAAAGCAAGGTGGTTA 792
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 663 GCACCGGTCGGTTCGGTAATCGTGGGAAGCAAGGAGTTCATCACTAAAGCAAGGTGGTTA 722
Query 793 AGGAAAACATTAGGCGGAGGAATGAGACAGATCGGCGTGCTCTGCGCCGCCGCATTGGTG 852
|||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 723 AGGAAAACTTTAGGCGGAGGAATGAGACAGATAGGTGTGCTCTGTGCCGCCGCGTTGGTG 782
Query 853 GCTCTCCATGAAAACGTCGCCAAGCTCGAAGATGACCATAAGAAAGCCAGGGTTTTGGCA 912
|||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 783 GCTCTCCATGAAAATGTCGCCAAGCTCGAAGATGACCACAAGAAAGCTAGGAACTTGGCA 842
Query 913 GAAGGACTGAACCGGATTGAACGGTTAAGAGTGAACGTTGCAGCTGTGGAAACCAACATC 972
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 843 GAAGGACTGAACCGGATTGAACGGTTAAGAGTGAACGTGGCAGCTGTGGAAACCAACATC 902
Query 973 ATATACGTAGACATACCAGAAGATCCAAAATTTGGAGCAGAAGAGGCATGTAAGAGCTTG 1032
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 903 ATATACGTAGACATACCAGAAGATCCAAAATTTGGAGCAGAAGAGGCATGTAAGAGTTTG 962
Query 1033 GAAGATGTCGGTGTGCTTGTCATACCCCAAGCTACATTCAGAATCAGGATTGTTCTACAC 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GAAGATGTCGGTGTGCTTGTCATACCCCAAGCTACATTCAGAATCAGGATTGTTCTACAT 1022
Query 1093 CACCAAATCTCAGACGTCGACGTGGAATATGTACTCTCTTGCTTTGAGAAAATATTTCA- 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1023 CACCAAATCTCAGACGTCGACGTGGAATATGTACTCTCTTGCTTTGAGAAAACGTTTTAG 1082
Query 1152 CTC-GTGAAG--AGAAGAGA 1168
||| |||| | ||||||||
Sbjct 1083 CTCAGTGAGGCTAGAAGAGA 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5