BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04530.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477709 jgi|Araly1|477709|fgenesh2_kg.3__410__AT3G04530.1 1330 0.0
> Ahg477709 jgi|Araly1|477709|fgenesh2_kg.3__410__AT3G04530.1
Length=950
Score = 1330 bits (720), Expect = 0.0
Identities = 827/878 (94%), Gaps = 9/878 (1%)
Strand=Plus/Plus
Query 1 ATGACCAGAGAATTCGAACTGGAAAACAACTACCAGCTTTGCGACGAGATCGG-CAGAGG 59
|||||| ||||||||||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct 1 ATGACCGGAGAATTCGAACTTGAAAATAACTACCAGCTTTGCGACGAGATCGGTC-GAGG 59
Query 60 TAGATTCGGAACAATCACTCGCTGTTTCTCACCCGCGACTAAAGAATTCTACGCCTGCAA 119
| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 60 TCGATTCGGAACAATCACTCGCTGTTTCTCACCGGCGACTAAAGAATTCTTCGCCTGCAA 119
Query 120 AACCATTGACAAGCGCGTGCTCATCGACGCATTAGATCGCGAGTGTATAGAGACGGAGCC 179
|||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct 120 AACCATCGACAAGCGCGTGCTCGTCGACGCGCTAGATCGTGAGTGTATAGAGACGGAGCC 179
Query 180 GAGGATCATGGCGATGTTACCGCCGCATCCGAATATCATCAGGATCTTCGATCTCTACGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGGATCATGGCGATGTTACCGCCGCATCCGAATATCATCAGGATCTTCGATCTCTACGA 239
Query 240 AACAGAGGATTCTCTTGCGATCGTCATGGAATTAGTCGATCCGCCGATGACGATTTACGA 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AACAGAGGATTCTCTAGCGATCGTCATGGAATTAGTCGATCCGCCGATGACGATTTACGA 299
Query 300 TCGGTTAATCTCCGCCGGGGGGA-GGTTATCAGAATCAGAATCCGCCTCATACGCGAAAC 358
|||||||||||||||| |||||| ||||||| ||||| |||||||| |||||||||||||
Sbjct 300 TCGGTTAATCTCCGCC-GGGGGACGGTTATCCGAATCGGAATCCGCTTCATACGCGAAAC 358
Query 359 AGATCCTCAGTGCGCTTGCTCATTGTCACCGGTGCGACGTCGTTCATCGGGATGTGAAAC 418
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGATCCTCCGTGCGCTTGCTCATTGTCACCGGTGCGACGTCGTTCATCGGGATGTGAAAC 418
Query 419 CTGACAACGTCTTAGTCGATCTCGTAAGCGGCGGTGTTAAGCTCTGTGATTTCGGATCAG 478
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 419 CTGACAACGTCTTAGTCGATCTCGTAAGCGGCTGCGTTAAGCTCTGTGACTTCGGATCAG 478
Query 479 CGGTGTGGTTAGGCGGAGAAACGGCGGAGGGAGTTGTGGGAACACCGTATTACGTGGCGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGGTGTGGTTAGGCGGAGAAACGGCGGAGGGAGTTGTGGGAACACCGTATTACGTGGCGC 538
Query 539 CGGAGGTAGTGATGGGGAGGAAGTACGACGAGAAGGTTGATATATGGAGCGCTGGTGTAG 598
|||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 539 CGGAGGTAGTGATGGGGAGGAAGTACGAGGAGAAGGTTGATATATGGAGCGCGGGGGTAG 598
Query 599 TGATATACACGATGCTAGCTGGAGAACCGCCGTTTAACGGTGAGACGGCGGAAGATATAT 658
|||| ||||||||| ||||||| || ||||||||||||||||| ||||||||||| ||||
Sbjct 599 TGATCTACACGATGTTAGCTGGTGAGCCGCCGTTTAACGGTGAAACGGCGGAAGAGATAT 658
Query 659 TTGAATCGATATTGAGAGGGAATTTGAGGTTTCCGCCGAAGAAGTTTGGGTCTGTATCAT 718
||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 659 TTGAATCGATATTGAGAGGGAATTTGAGGTTTCCGCCGAAGAAATTTGGATCGGTATCAG 718
Query 719 CGGAAGCGAAGGATTTGTTGAGGAAAATGATATGTCGTGATGTTTCTCGGCGATTTTCTG 778
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 719 CAGAAGCGAAGGATTTGTTGAGGAAAATGATATGTCGCGATGTTTCCCGGCGATTTTCTG 778
Query 779 CAGAGGATGCTCTTCGACATTCATGGATGATGAACGTTGGAAACCTCCAAAGCAATTAGT 838
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 779 CAGAAGATGCTCTTCGACATTCATGGATGATGAACGTTGGAGACCTCCAAAGCAAATAAT 838
Query 839 CGAAGCTTTT-CAGATATGTGATTAGAGA-GTGTAATT 874
|||| |||| | ||| |||||||||| ||||||||
Sbjct 839 AGAAGTTTTTAC-GAT--GTGATTAGAGGTGTGTAATT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5