BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04540.1 Length=297 Score E Sequences producing significant alignments: (Bits) Value Ahg317317 jgi|Araly1|317317|fgenesh1_pm.C_scaffold_3000333 377 2e-104 Ahg313838 jgi|Araly1|313838|fgenesh1_pm.C_scaffold_1002618 283 4e-76 > Ahg317317 jgi|Araly1|317317|fgenesh1_pm.C_scaffold_3000333 Length=243 Score = 377 bits (204), Expect = 2e-104 Identities = 232/245 (95%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 55 ATGGCCATCACAAAGACTTCAGTGACTCTTTTACTTTTAATAATAATGGCTGCTTCGTTG 114 ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 1 ATGGCCATCACAAAGACTTCAGTGACTCTTTTACTCTTAATAATAATGGCTGTTTCGTTG 60 Query 115 TCTAATTTCAGCGTCTTGGCTTCAGAGATCAAACCTACAGGAAGAGTTGATAATCAATGC 174 ||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| Sbjct 61 TCTAATTTCAGCGTCTTGGCTTCGGACATCAAACCTACAGGAAGAATTGATAATCAATGC 120 Query 175 AAGGAGATGTGTTC-GGCAACGTT-TGGGGACGGTAAATGTGCCGCAGACTGTAGGAAGG 232 ||| |||||||||| ||| ||| |||||||||||||||||||| ||||||||||||| Sbjct 121 AAGCAGATGTGTTCGGGC--GGTTACGGGGACGGTAAATGTGCCGCGGACTGTAGGAAGG 178 Query 233 CTGGTTTCTCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCA 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CTGGTTTCTCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCA 238 Query 293 CCTAG 297 ||||| Sbjct 239 CCTAG 243 > Ahg313838 jgi|Araly1|313838|fgenesh1_pm.C_scaffold_1002618 Length=246 Score = 283 bits (153), Expect = 4e-76 Identities = 213/242 (88%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 55 ATGGCCATCACAAAGACTTCAGTGACTCTTTTACTT-TTAATAATAATGGCTGCTTCGT- 112 |||| ||||||||||| || ||||||| ||||| || ||||||||| ||||||| || | Sbjct 1 ATGGGCATCACAAAGAATTTAGTGACTTTTTTA-TTCTTAATAATATTGGCTGC-TCTTG 58 Query 113 TGTCTAATTTCAGCGTCTTGGCTTCAGAGATCAAACCTACAGGAAGAGTTGATAATCAAT 172 |||| |||| || || |||||||||||||||||||||||||| ||| || || |||||| Sbjct 59 TGTCCAATTACAATGTATTGGCTTCAGAGATCAAACCTACAGGGAGAATTCATGATCAAT 118 Query 173 GCAAGGAGATGTGTTCGGCAACGTTTGGGGACGGTAAATGTGCCGCAGACTGTAGGAAGG 232 ||||| |||||||||||||||||| ||| | ||||||||| |||| ||||||||||||| Sbjct 119 GCAAGCAGATGTGTTCGGCAACGTACGGGAATGGTAAATGTTCCGCGGACTGTAGGAAGG 178 Query 233 CTGGTTTCTCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCA 292 |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 179 CTGGGTTCTCATCCGGACAATGTCTTACCTCTTCTCCTTTCGGAAATAAATGTTGTTGCA 238 Query 293 CC 294 || Sbjct 239 CC 240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10416475797 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5