BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G04540.1

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg317317 jgi|Araly1|317317|fgenesh1_pm.C_scaffold_3000333           377    2e-104
  Ahg313838 jgi|Araly1|313838|fgenesh1_pm.C_scaffold_1002618           283    4e-76 


> Ahg317317 jgi|Araly1|317317|fgenesh1_pm.C_scaffold_3000333
Length=243

 Score =  377 bits (204),  Expect = 2e-104
 Identities = 232/245 (95%), Gaps = 4/245 (2%)
 Strand=Plus/Plus

Query  55   ATGGCCATCACAAAGACTTCAGTGACTCTTTTACTTTTAATAATAATGGCTGCTTCGTTG  114
            ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  1    ATGGCCATCACAAAGACTTCAGTGACTCTTTTACTCTTAATAATAATGGCTGTTTCGTTG  60

Query  115  TCTAATTTCAGCGTCTTGGCTTCAGAGATCAAACCTACAGGAAGAGTTGATAATCAATGC  174
            ||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct  61   TCTAATTTCAGCGTCTTGGCTTCGGACATCAAACCTACAGGAAGAATTGATAATCAATGC  120

Query  175  AAGGAGATGTGTTC-GGCAACGTT-TGGGGACGGTAAATGTGCCGCAGACTGTAGGAAGG  232
            ||| |||||||||| |||   |||  |||||||||||||||||||| |||||||||||||
Sbjct  121  AAGCAGATGTGTTCGGGC--GGTTACGGGGACGGTAAATGTGCCGCGGACTGTAGGAAGG  178

Query  233  CTGGTTTCTCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCA  292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  CTGGTTTCTCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCA  238

Query  293  CCTAG  297
            |||||
Sbjct  239  CCTAG  243


> Ahg313838 jgi|Araly1|313838|fgenesh1_pm.C_scaffold_1002618
Length=246

 Score =  283 bits (153),  Expect = 4e-76
 Identities = 213/242 (88%), Gaps = 4/242 (2%)
 Strand=Plus/Plus

Query  55   ATGGCCATCACAAAGACTTCAGTGACTCTTTTACTT-TTAATAATAATGGCTGCTTCGT-  112
            |||| ||||||||||| || ||||||| ||||| || ||||||||| ||||||| || | 
Sbjct  1    ATGGGCATCACAAAGAATTTAGTGACTTTTTTA-TTCTTAATAATATTGGCTGC-TCTTG  58

Query  113  TGTCTAATTTCAGCGTCTTGGCTTCAGAGATCAAACCTACAGGAAGAGTTGATAATCAAT  172
            |||| |||| ||  || |||||||||||||||||||||||||| ||| || || ||||||
Sbjct  59   TGTCCAATTACAATGTATTGGCTTCAGAGATCAAACCTACAGGGAGAATTCATGATCAAT  118

Query  173  GCAAGGAGATGTGTTCGGCAACGTTTGGGGACGGTAAATGTGCCGCAGACTGTAGGAAGG  232
            ||||| ||||||||||||||||||  ||| | ||||||||| |||| |||||||||||||
Sbjct  119  GCAAGCAGATGTGTTCGGCAACGTACGGGAATGGTAAATGTTCCGCGGACTGTAGGAAGG  178

Query  233  CTGGTTTCTCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCA  292
            |||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  179  CTGGGTTCTCATCCGGACAATGTCTTACCTCTTCTCCTTTCGGAAATAAATGTTGTTGCA  238

Query  293  CC  294
            ||
Sbjct  239  CC  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10416475797


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5