BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04545.1 Length=246 Score E Sequences producing significant alignments: (Bits) Value Ahg928004 jgi|Araly1|928004|scaffold_300461.1 248 1e-65 > Ahg928004 jgi|Araly1|928004|scaffold_300461.1 Length=316 Score = 248 bits (134), Expect = 1e-65 Identities = 193/221 (87%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 28 TTTGTACTCTTAATAATATTGGCTGCTTCGTTGTCCAATTTCAACGTCTTGGCATCAGAT 87 ||| |||||||||||||| ||| ||||||||||||||||| |||| ||||||| ||||| Sbjct 4 TTT-TACTCTTAATAATAATGGTTGCTTCGTTGTCCAATTGCAACATCTTGGCTTCAGAG 62 Query 88 ATCAAACCTACCGGGAGAATTGATAATCA-ATGCAAGCGGATGTGTTCGGCAACGTATGG 146 |||||||||||||| ||||||| |||| | ||||||| ||| ||||||| ||||||||| Sbjct 63 ATCAAACCTACCGGAAGAATTGGTAAT-ATGTGCAAGCAGATATGTTCGGAAACGTATGG 121 Query 147 GAACGGTAAATGTGCCGCAGACTGTA-GAAGTGATGGTTTCTCATCCGGACAATGTTTTA 205 ||| ||| ||||||||| ||||||| |||| | ||| |||||||||||||||||||||| Sbjct 122 GAATGGT-TATGTGCCGCGGACTGTAGGAAG-GCTGGCTTCTCATCCGGACAATGTTTTA 179 Query 206 CTTCTCCACCTTTCGACAATAGATGTTGTTGCAACAATTGA 246 ||||||| ||||| || |||| ||||||||||||||| ||| Sbjct 180 CTTCTCCTCCTTTGGAAAATAAATGTTGTTGCAACAAGTGA 220 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8515982203 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5