BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G04545.1

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928004 jgi|Araly1|928004|scaffold_300461.1                        248    1e-65


> Ahg928004 jgi|Araly1|928004|scaffold_300461.1
Length=316

 Score =  248 bits (134),  Expect = 1e-65
 Identities = 193/221 (87%), Gaps = 6/221 (3%)
 Strand=Plus/Plus

Query  28   TTTGTACTCTTAATAATATTGGCTGCTTCGTTGTCCAATTTCAACGTCTTGGCATCAGAT  87
            ||| |||||||||||||| ||| ||||||||||||||||| |||| ||||||| ||||| 
Sbjct  4    TTT-TACTCTTAATAATAATGGTTGCTTCGTTGTCCAATTGCAACATCTTGGCTTCAGAG  62

Query  88   ATCAAACCTACCGGGAGAATTGATAATCA-ATGCAAGCGGATGTGTTCGGCAACGTATGG  146
            |||||||||||||| ||||||| |||| |  ||||||| ||| ||||||| |||||||||
Sbjct  63   ATCAAACCTACCGGAAGAATTGGTAAT-ATGTGCAAGCAGATATGTTCGGAAACGTATGG  121

Query  147  GAACGGTAAATGTGCCGCAGACTGTA-GAAGTGATGGTTTCTCATCCGGACAATGTTTTA  205
            ||| |||  ||||||||| ||||||| |||| | ||| ||||||||||||||||||||||
Sbjct  122  GAATGGT-TATGTGCCGCGGACTGTAGGAAG-GCTGGCTTCTCATCCGGACAATGTTTTA  179

Query  206  CTTCTCCACCTTTCGACAATAGATGTTGTTGCAACAATTGA  246
            ||||||| ||||| || |||| ||||||||||||||| |||
Sbjct  180  CTTCTCCTCCTTTGGAAAATAAATGTTGTTGCAACAAGTGA  220



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8515982203


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5