BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04550.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928005 jgi|Araly1|928005|scaffold_300462.1 2124 0.0
Ahg489651 jgi|Araly1|489651|fgenesh2_kg.6__2785__AT5G28500.1 451 6e-126
Ahg905007 jgi|Araly1|905007|Al_scaffold_0003_2135 106 5e-22
> Ahg928005 jgi|Araly1|928005|scaffold_300462.1
Length=1378
Score = 2124 bits (1150), Expect = 0.0
Identities = 1306/1380 (95%), Gaps = 15/1380 (1%)
Strand=Plus/Plus
Query 33 ATTCACCATGTTCTCTCTCAAATCCTTAATCTCCTCACCTTTCACACAATCCACCACTCA 92
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 14 ATTCACCATGTTTTCTCTCAAATCCTCAATCTCCTCACCTTTCACACAATCCACCACTCA 73
Query 93 TGGATTATTCACCAACCCGATTACCCGACCCGTTAATCCATTACCACGTACCGTTTCCTT 152
||||||||||||||||||||||||||||||||||||||||||| | | ||| |
Sbjct 74 TGGATTATTCACCAACCCGATTACCCGACCCGTTAATCCATTA-C-C---CCG------T 122
Query 153 CACCGTTACCGCTTCCATGATACCCAAAAGATCCTCAGCTAACATGATTCCCAAAAACCC 212
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 123 -ACCGTTACTGCTTCCATGATACCCAAAAAATCCTCAGCTAACATGATTCCCAGAAACCC 181
Query 213 TCCGGCGAGGCAACAGCTCTACCAACCGTTCCGACCACCGTCATCTCCCATTCCAACCCA 272
||||||| |||||||||||||||| || ||||| |||||||||||||| |||||||||||
Sbjct 182 TCCGGCGCGGCAACAGCTCTACCAGCCTTTCCGGCCACCGTCATCTCCGATTCCAACCCA 241
Query 273 ATTCCGTTCACTCGACTCCGCCGGTAAAATCGAAATCCTCGCCGGTCGAATGGCTCTCTG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATTCCGTTCACTCGACTCCGCCGGTAAAATCGAAATCCTCGCCGGTCGAATGGCTCTCTG 301
Query 333 GTTCGAATACGCACCTCTTATCTCTTCTCTTTACACCGATGGTTTCACTCCTCCAACCAT 392
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 302 GTTCGAATACGCTCCTCTTATCTCTTCTCTCTACACCGATGGTTTCACTCCTCCCACCAT 361
Query 393 CGAAGAACTCACCGGAATCTCAAGCATCGAACAGAACCGTTTAATCGTCGGTGCGCAAGT 452
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 362 CGAAGAGCTCACCGGAATCTCAAGCATTGAACAGAACCGTTTAATCGTCGGTGCGCAAGT 421
Query 453 TCGTGACTCAATTCTTCAATCTATCCATGAACCGGAGCTCATTTCTGCGTTCGACACCGG 512
||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 422 TCGAGACTCAATTCTTCAATCTATACATGAACCGGAGCTCATTGCGGCGTTCGACACCGG 481
Query 513 TGGTGCAGAGCTTCTATACGAAATTCGTCTCCTTAGCACCACGCAGCGTGTTGCAGCCGC 572
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 482 TGGTGCAGAGCTTCTATACGAAATCCGTCTCCTCAGCACCACGCAGCGCGTTGCAGCCGC 541
Query 573 CACATTCATCATTGATCGTAATATTGATTCGAAAGGAGCACAGGATTTGGCACGAGCCAT 632
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 542 CACATTCATCATTGATCGTAATATTGATTCGAAAGGCGCACAGGATTTGGCGCGAGCCAT 601
Query 633 CAAGGATTATCCTAACCGTCGTGGAGACGTTGGATGGTTGGATTTTGATTACAACTTACC 692
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 602 CAAGGATTATCCTAACCGGCGTGGAGACGTTGGATGGTTGGATTTTGATTACAATTTACC 661
Query 693 AGGAGATTGTCTTTCATTCTTGTATTACAGGCAGAGCAGAGAGAATAAGAATCCATCGGA 752
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 662 AGGAGATTGTCTTTCGTTCTTGTATTACAGGCAGAGCAGAGAGAACAAGAATCCATCGGA 721
Query 753 TCAGAGAACCTCGATGCTTCTACAAGCATTGGGGGTTGCAGAATCAGAAAAGGCTAAGAA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 722 ACAGAGAACCTCGATGCTTCTACAAGCATTGGGGGTTGCAGAATCAGAAAAGGCCAAGAA 781
Query 813 CAGGTTGAACACAGAGCTATACGGGGACaaggaagcagagaaggagaaggagaagaagaa 872
|| |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 782 CAAGTTGAACAAAGAGCTATACGGGGAGAAGGAAGAAGAGAAGGAGAAGGAGAAGAAGAA 841
Query 873 gaaggaagaggaagTCAAAGCTATTCGGATTCCAGTGGTGAGGCTTAAGTTTGGAGAAGT 932
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 842 GAAGGAAGAGGAAGTCAAAGCTATTCGGATTCCGGTGGTGAGGCTAAAGTTCGGAGAAGT 901
Query 933 AGCAGAAGCGACCTCGGTGGTAGTTTTACCGGTTTGTAAAGCAGAGGAAGGGGAAAAGAA 992
||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 902 AGCAGGGGCGAGCTCGGTGGTTGTTTTGCCGGTTTGTAAAGCAGAGGAAGGGGAAAAGAA 961
Query 993 GATTCTTGAAGCTCCAATGGAGATCATAGCCGGAGGGGATTTTAAGGTGGTTGAGGCGGA 1052
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 962 GATTCTTGAAGCTCCAATGGAGATCATAGCCGGAGGGGATTTCAAGGTTGTTGAGGCGGA 1021
Query 1053 GAAAGGATGGAAGAGATGGGTAGTGCTTCCGTCGTGGAACCCAGTGGCAGCCATTGGGAA 1112
|||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct 1022 GAAAGGATGGAAGAGATGGGTAGTTCTTCCGGGGTGGAACCCAGTGGCGGCCATTGGGAA 1081
Query 1113 AGGCGGTGTGGCGGTTTCTTTCAGGGATGATAGAAAAGTGCTGCCTTGGGATGGAAAGGA 1172
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1082 AGGCGGTGTGGCGGTTTCTTTCAGGGATGATAGAAAAGTACTGCCTTGGGACGGAAAGGA 1141
Query 1173 GGAGCCTTTACTGGTAGTGGCCGATAGGGTGAGGAATGTTGTGGAGGCTGATGACGGGTA 1232
||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct 1142 GGAGCCTTTACTGGTAGTGACCGATAGGGTGAGGAATGTCGTGGAGGCCGATGACGGGTA 1201
Query 1233 TTATCTCGTGGTGGCTGAGAACGGACTTAAGCTAGAGAAAGGATCAGATTTGAAGGCGAG 1292
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1202 TTACCTCGTTGTGGCTGAGAACGGACTTAAGCTAGAGAAAGGATCAGAGTTGAAGGCGAG 1261
Query 1293 AGAGGTGAAGGAGAGTTTAGGGATGGTTGTTTTGGTGGTGAGGCCGCCAAGAGAAGATGA 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AGAGGTGAAGGAGAGTTTAGGGATGGTTGTTTTGGTGGTGAGGCCGCCAAGAGAAGATGA 1321
Query 1353 TGATGATTGGCAGACAAGTCATCAGAACTGGGACTGAATTAATAGAATCAATACTCATAT 1412
||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||
Sbjct 1322 TGAAGATTGGCAGACAAGTCATCAAAACTGGGACTGA-T-A-TAGAATCAATACCCATAT 1378
> Ahg489651 jgi|Araly1|489651|fgenesh2_kg.6__2785__AT5G28500.1
Length=1424
Score = 451 bits (244), Expect = 6e-126
Identities = 917/1226 (75%), Gaps = 109/1226 (9%)
Strand=Plus/Plus
Query 223 CAACAGCTCTACCAACCGTTCCGACCACCGTCATCTCCCATTCCAACC-CAATTCCGTTC 281
||||| ||||| ||||| ||||| ||||| |||| ||| ||| || ||||||| ||
Sbjct 201 CAACAACTCTATCAACCATTCCGTCCACCACCATC-ACCAATCCCTCCAAAATTCCGATC 259
Query 282 ACTCGACTCCGCCGGTAAAATCGAAATCCTCGCCGGTCGAAT-GGCTCTCTGGTTCGAAT 340
||||||| ||||||| ||||||||| ||||||| | ||| | || ||||||||||||||
Sbjct 260 ACTCGACACCGCCGGAAAAATCGAAGTCCTCGCTGATCGTCTCGG-TCTCTGGTTCGAAT 318
Query 341 ACGCACCTCTTATCTCTTCTCTT-TACACCGATGGTTTCACTCCTCCAACCATCGAAGAA 399
|||| || || || || || ||| ||||| || || |||| ||||||| | |||||||||
Sbjct 319 ACGCTCCACTCATTTCCTC-CTTATACACTGAAGGCTTCATTCCTCCATCAATCGAAGAA 377
Query 400 CTCACCGGAATCTCAAGCATCGAACAGAACCGTTTAATCGTCGGTGCGCAAGTTCGTGAC 459
||||||||| | || | |||||||||| ||| | |||||||| |||||||||||||||
Sbjct 378 CTCACCGGACTTTCTGGTGTCGAACAGAATCGTCTCATCGTCGGCGCGCAAGTTCGTGAC 437
Query 460 TCAATT-CTTCAAT-CTAT-CCATGAACCGGAGCTCATTTCTGCGTTCGACACCGGTGGT 516
|| || |||||| | | ||| |||||||||| || ||||||| |||||||||||
Sbjct 438 TC-TTTAGTTCAATCCGGTGCCA--AACCGGAGCTGATCGCTGCGTTTGACACCGGTGGA 494
Query 517 GCAGAGCTTCTATACGAAATTCGTCTCCTT-AGCACCACGCAGCGTGTTGCAGCCGC-CA 574
|| |||||||| ||||| |||||||| || | || || || ||| | || || || |
Sbjct 495 GCCGAGCTTCTCTACGAGATTCGTCT-TTTGAATACAACTCAACGTATAGCTGCTGCTGA 553
Query 575 CATTCATCATTGATCGTAATATT-GATTCGAAAGGAGCACAGGAT-TTGGC-ACGAGCCA 631
|| ||| |||||| || || ||| |||||||||| || ||| || || | |||| |
Sbjct 554 -ATACATTGTTGATCACGAT-TTCGATACGAAAGGAGCTCAAGATCTT-GCGA-GAGCGA 609
Query 632 TCAAGGATTATCCTAACCGTCGTGGAGACGTTGGATGGTTGGATTTTGATTACAACTTAC 691
| || |||||||| | ||||| || || ||||||||| ||||||||||| |||||||
Sbjct 610 TTAAAGATTATCCGCATCGTCGCGGTGATGTTGGATGGGAAGATTTTGATTATAACTTAC 669
Query 692 CAGGAGATTGTCTT-TCATTCT-TG-TATTACAGGCAGAGCAGAGAGA-ATAAGAATCCA 747
| ||||||||| || || || | || | ||| ||| | || ||||| | || || |||
Sbjct 670 CTGGAGATTGT-TTGTC-TTTTATGCT-TTATAGGAAAAGTAGAGA-ATATCGGAGTCCG 725
Query 748 TCGGATCA-GAGAACCT-CGA-TGCTTC-TACAAGCAT-TGGGGGTTGCAG-AATCAGA- 800
||||| | ||| || | | ||| || |||||| | | | ||| | || ||||
Sbjct 726 TCGGA-GATTCGAA-CTAC-ATTGC-TCGAACAAGC-TCTTGAAACTGCGGTAA-CAGAG 779
Query 801 AAAGGCTAAGAACAGGTTGAACACAGAGCTATACGGG-G--ACaaggaagcagagaagga 857
||| || || || | | | | | | | || ||| | ||| || || |||| | |
Sbjct 780 AAA-GCGAA-AA-A-G--G----CGGTGGT-TA-GGGAGTTACATGG-AG-AGAG-TGAA 824
Query 858 gaaggagaagaagaagaaggaagaggaag-TCAAAGCT-ATTCG-GATTCCAGTGGTGAG 914
||| ||| || || || ||||||| || | ||| | ||||| | |||| || ||||
Sbjct 825 GAA-GAG-AG-AG-CTAATGAAGAGG-AGAT-AAAAATCATTCGTG-TTCCTGTAGTGA- 876
Query 915 GCTT-AAGTTTGGAGAAGTAGCAGAAGCGACCTCGGTGGTAGTTTTACCGGTTTGTAAAG 973
| || | ||||||||||||||| | ||||| ||||| || |||||||||||||||||||
Sbjct 877 GATTGAGGTTTGGAGAAGTAGCGGGAGCGAGTTCGGTTGTTGTTTTACCGGTTTGTAAAG 936
Query 974 CAGAGGAAGGGGAAAAGAAGATTCTTGAAGCTCCAATGGAGATC-ATAGCCGGAGGGGAT 1032
|||||||||| || ||||| |||||||||||||||||||| | | | | ||||| ||
Sbjct 937 CAGAGGAAGGAGAGGAGAAGCTTCTTGAAGCTCCAATGGAGTTTGAAA-CTGGAGGAGAG 995
Query 1033 TTTAAGGTG--GTTGAGGCGGAGAAAGGAT-GGAAG-AGATGGGTAGTGCTT-CCGTCGT 1087
||| |||| || || || ||||||| || ||| | |||||||| || || ||| ||
Sbjct 996 TTT--GGTGTAGTGGAAGCTGAGAAAG-ATTGGA-GTAGATGGGTTGTT-TTACCGG-GT 1049
Query 1088 -GG-AACCCAGTGGCAGCCATTGGGAAAGGCGGTGTGGCGGTTTC-TTTCAGGGATGATA 1144
|| ||||| || | || || ||||||| || ||||||||||| ||| || |||||||
Sbjct 1050 TGGGAACCC-GTTGTGGCGGTTAGGAAAGGAGGAGTGGCGGTTTCGTTT-AGAGATGATA 1107
Query 1145 GAAAAGTGCTGCCTTGGGATGG-AAAGGAGGAGCCTTTACTGGTAGTGGCCGATAGGGTG 1203
| |||| |||| ||| | || |||| || || | || |||| ||| |||||||| |
Sbjct 1108 GGGAAGTTTTGCCGTGGAACGGGAAAGAAG-AGGCGATAATGGTTGTGATCGATAGGGAG 1166
Query 1204 AGGAATGTTG-TGGAGGCTGATGACGGGTATTA-TCTCGTG--GTGGCTGA-GAACGGAC 1258
| ||| | | |||| || ||| | || ||||| | || || |||||||| | |||
Sbjct 1167 AAGAA-GACGGTGGAAGCGGATAATGGATATTACTATCTTGTTGTGGCTGAAGGTGGGA- 1224
Query 1259 TTAAGCTAGAGAAAGGATCAGAT-TTGAAGGCGAGAG-AGGTGAAGGAGAGTTTAGGGAT 1316
| ||| | || | |||||| | | ||||||| || || || |||| ||||||||||||||
Sbjct 1225 TGAAGTTGGATAGAGGATCGG-TGTTGAAGGAGAAAGGAG-TGAATGAGAGTTTAGGGAT 1282
Query 1317 GGTTGTTTTGGTGGTGAGGCCGCCAAGAGAAGATGATGATGATTGGCAGACAAGTCATCA 1376
|||||||||||| || |||||||| ||||| ||||||||||||||||||| || | || |
Sbjct 1283 GGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGATGATGATGATTGGCAGATAAATGATGA 1342
Query 1377 -GAACTGGGACT-GAATT-AAT-AGA 1398
|| ||||| | ||||| ||| |||
Sbjct 1343 AGAT-TGGGATTAGAATTCAATTAGA 1367
> Ahg905007 jgi|Araly1|905007|Al_scaffold_0003_2135
Length=273
Score = 106 bits (57), Expect = 5e-22
Identities = 87/100 (87%), Gaps = 7/100 (7%)
Strand=Plus/Plus
Query 1272 AGGATCAGAT-TTGAAGGCGAGA-GAGGTGAAGGAGAGTTTAGGGATGGTTGTTTTGGTG 1329
|||||| | | ||||||| || | || ||||| |||||||||||||||||||||||||||
Sbjct 153 AGGATC-GGTGTTGAAGGAGAAAGGA-GTGAATGAGAGTTTAGGGATGGTTGTTTTGGTG 210
Query 1330 GTGAGGCCGCC-A-AGA-GAAGATGATGATGATTGGCAGA 1366
|| |||||||| | ||| || |||||||||||||||||||
Sbjct 211 GTTAGGCCGCCGAGAGATGATGATGATGATGATTGGCAGA 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5