BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04560.1 Length=1470 Score E Sequences producing significant alignments: (Bits) Value Ahg928006 jgi|Araly1|928006|scaffold_300463.1 1986 0.0 > Ahg928006 jgi|Araly1|928006|scaffold_300463.1 Length=1293 Score = 1986 bits (1075), Expect = 0.0 Identities = 1229/1302 (94%), Gaps = 15/1302 (1%) Strand=Plus/Plus Query 53 TCGACGAA-CTG-GAGAGAGATGGCGGAAAATCTATTCTCAGGGCTGCCACCTCCTTCTT 110 |||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 TCGACGAACCGGAGAGAGAGATGGCGGACAATCTATTCTCAGGGCTGCCACCTCCTTCTT 60 Query 111 CATCTCAGCAGCAAGAGCTACCAATTTCTCCAATACCAGACGAGTCAAAGATTGAAACTT 170 |||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| Sbjct 61 CATCTCAGCAGCAAGAGCTACCAATTTCTCTAAAACCAGACGATTCAAAGATTGAAACTT 120 Query 171 CCTCTCCAGCTCCGATTCTGGTTCTCAAGAGTGCCCTAAAGCGATCGAAGCCAGAAGAAT 230 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCTCTCCAGCTCCGACTCTGGTTCTCAAGAGTGCCCTAAAGCGATCGAAGCCAGAAGAAT 180 Query 231 CTGCACCCAATCTTTCAGCTCCTCCTGTTCTCAAGAGCGCACTAAAGCGGTCAAAACCAT 290 ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 CTGCACCCAATGTTTCAGCTCCTCCTGTTCTCAAGAGCGCACTTAAGCGGTCAAAACCAT 240 Query 291 CAGAATCTACTCCGGAACCAGTACCA-GAACCGGA-AGCTCCTAAAAAGCGTCTACAGTT 348 |||||||||| |||||||||| | | | | | | | ||| || ||| ||||||| Sbjct 241 CAGAATCTACACCGGAACCAG-A--AGGTA-CATACAATTCC---GAA-CGTTTACAGTT 292 Query 349 TAAGACATCAACCGATGCATCAGAGGAACAAGTGATAGAAGCTATGCAGAAGATAACATC 408 |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 293 TAAGACATCAACCGATGCATCAGAAGAACAAGTGATTGAAGCGATGCAGAAGATAACATC 352 Query 409 TCATATCAAGAACCCTTCCAAATTCTCCAAAGCCTCGAAGCTTGCTATACGGCTGATCCA 468 ||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 353 TCACATCAAGAACCCTTCTAAGTTCTCCAAAGCCTCAAAGCTTGCTATACGGCTGATCCA 412 Query 469 AGCTGGTAGTGTGAAGCCAGAAACAAGCAGCTATTTTATTGCGATACTTGAAGCTGCCAT 528 ||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||| Sbjct 413 AGCTGGTAGTGTGAAGCCAGAAACAAGCAGCTACTTCATTGCGATGCTTGAGGCTGCCAT 472 Query 529 GTCGTCTAAAACTCCTTGTACAGATCGCTCGGTTCGAGCAGACTATCATGCATTGTTCTC 588 |||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 473 GTCGTCAAAAACTCCTTGTACTGATCGCTTGGTTCGAGCAGACTATCATGCATTGTTCTC 532 Query 589 GGCAGCTCAGGATGTAGCCGAGTGCCTTGATAAAAGCCAGAAGAATCTGTTGACCATATG 648 ||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| Sbjct 533 GGCAGCTCAGGATGTCGCCGAGTGTCTAGATAAAAGCCAGAAGAATCTGTTGACCATATG 592 Query 649 GACATTCAAAGCAGTTGTGGCTAATGACCTCTTCACTGATGACAGCTTTATGTTTTCCAA 708 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 593 GACATTCAAAGCAGTTGTGGCTAATGACCTCTTCACTGATGACAGCTTTGTGTTTTCCAA 652 Query 709 GACTGCTACTCGTATAAAGGAGGCTATATCTGATCTTCCGGTTTCAACCGAGGAGGATGA 768 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 653 GACTGCTACTCAAATAAAGGAGGCTATATCTGATCTTCCGGTTTCAACTGAGGAGGATGA 712 Query 769 TGTGGAAGAAGCAGCTGCTCTTGAAGAAGCAGCGGTGAAAGACAATGGAGATGGCCAGAC 828 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct 713 TGTGGAAGAAGCAGCTGCTCTTGAAGAAGCGGCGGTGAAGGAAAATGGAGATGGCCAGAC 772 Query 829 AACGCAGGACGTGGCTGAAGCTGCTTCAGCTGGAGATAATGAGGCTGTCGAGTCTGATCC 888 |||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 773 AACGCAGGACGTAGCTGAAGCTGCTTCAGCTGGAAATAATGAGGATGTCGAGTCTGATCC 832 Query 889 ATTTGGACTAGATGCCTGGATTCCCAGTTCTGGAAAGAAAAATGGTAAAACAAAGATAAA 948 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 CTTTGGGCTCGATGCCTGGATTCCCAGTTCTGGAAAGAAAAATGGTAAAACAAAGATAAA 892 Query 949 GAGAACAAATGAAGATCCAGATGCCGAAGAGAATAAGAGGTTTCTCAGGTCAAAAAGAGA 1008 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 893 GAGAACAAATGAAGATACAGATGCTGAAGAGAATAAGAGGTTTCTCAGGTCAAAAAGAGA 952 Query 1009 AGCTTTGATTACATGCTTGGAGATTGCTGCACGCCGTTACAAAGTTCCATGGTGCCAAAC 1068 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 953 AGCTTTGATTACATGCTTAGAGATTGCTGCACGCCGTTACAAAGTTCCATGGTGCCAAAC 1012 Query 1069 AGTTATAGACATATTGGTGAAACATGCCTTTGAGAACGTGTCAAGGTTCACATCACAGCA 1128 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1013 TGTTATAGACATATTGGTGAAACATGCCTTTGACAACGTGTCAAGGTTCACATCACAGCA 1072 Query 1129 GAGACAAGCAGTGGAGAAACTCTGGGCTTCTGTTCGAGAACAACATCTCCGTAGGAAGCA 1188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 GAGACAAGCAGTGGAGAAACTCTGGGCTTCTGTTCGAGAACAACATCTCCGTAGGAAGCA 1132 Query 1189 AGGCAAATCAGTCACAGGAAAACTAGACGTTACAGCTTTTGAATCGCTTCAGGATAAATA 1248 ||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1133 AGGTAAATCAGTCACTGGAAAACTCGACGTGACAGCTTTTGAATCGCTTCAGGATAAATA 1192 Query 1249 CGCCAACGAGAAAATGAGCATCCGAAGCTCAGTTGGAGCCAGCGGTGAACGCCGTGCACA 1308 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1193 CGCCAACGAGAAAATGAGCATCCGGAGCTCAGTTGGAGCCAGCGGTGAACGCCGTGCCCA 1252 Query 1309 GCAATGGCTCGGTTAATAAAACAGTTT-CCAAAAAG-GTCTG 1348 ||||||||||||||||||||||| ||| ||||||| ||||| Sbjct 1253 GCAATGGCTCGGTTAATAAAACA-TTTACCAAAAAAAGTCTG 1293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55002313780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5