BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04560.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928006 jgi|Araly1|928006|scaffold_300463.1 1986 0.0
> Ahg928006 jgi|Araly1|928006|scaffold_300463.1
Length=1293
Score = 1986 bits (1075), Expect = 0.0
Identities = 1229/1302 (94%), Gaps = 15/1302 (1%)
Strand=Plus/Plus
Query 53 TCGACGAA-CTG-GAGAGAGATGGCGGAAAATCTATTCTCAGGGCTGCCACCTCCTTCTT 110
|||||||| | | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 TCGACGAACCGGAGAGAGAGATGGCGGACAATCTATTCTCAGGGCTGCCACCTCCTTCTT 60
Query 111 CATCTCAGCAGCAAGAGCTACCAATTTCTCCAATACCAGACGAGTCAAAGATTGAAACTT 170
|||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 61 CATCTCAGCAGCAAGAGCTACCAATTTCTCTAAAACCAGACGATTCAAAGATTGAAACTT 120
Query 171 CCTCTCCAGCTCCGATTCTGGTTCTCAAGAGTGCCCTAAAGCGATCGAAGCCAGAAGAAT 230
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCTCCAGCTCCGACTCTGGTTCTCAAGAGTGCCCTAAAGCGATCGAAGCCAGAAGAAT 180
Query 231 CTGCACCCAATCTTTCAGCTCCTCCTGTTCTCAAGAGCGCACTAAAGCGGTCAAAACCAT 290
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CTGCACCCAATGTTTCAGCTCCTCCTGTTCTCAAGAGCGCACTTAAGCGGTCAAAACCAT 240
Query 291 CAGAATCTACTCCGGAACCAGTACCA-GAACCGGA-AGCTCCTAAAAAGCGTCTACAGTT 348
|||||||||| |||||||||| | | | | | | | ||| || ||| |||||||
Sbjct 241 CAGAATCTACACCGGAACCAG-A--AGGTA-CATACAATTCC---GAA-CGTTTACAGTT 292
Query 349 TAAGACATCAACCGATGCATCAGAGGAACAAGTGATAGAAGCTATGCAGAAGATAACATC 408
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 293 TAAGACATCAACCGATGCATCAGAAGAACAAGTGATTGAAGCGATGCAGAAGATAACATC 352
Query 409 TCATATCAAGAACCCTTCCAAATTCTCCAAAGCCTCGAAGCTTGCTATACGGCTGATCCA 468
||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 353 TCACATCAAGAACCCTTCTAAGTTCTCCAAAGCCTCAAAGCTTGCTATACGGCTGATCCA 412
Query 469 AGCTGGTAGTGTGAAGCCAGAAACAAGCAGCTATTTTATTGCGATACTTGAAGCTGCCAT 528
||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||
Sbjct 413 AGCTGGTAGTGTGAAGCCAGAAACAAGCAGCTACTTCATTGCGATGCTTGAGGCTGCCAT 472
Query 529 GTCGTCTAAAACTCCTTGTACAGATCGCTCGGTTCGAGCAGACTATCATGCATTGTTCTC 588
|||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 473 GTCGTCAAAAACTCCTTGTACTGATCGCTTGGTTCGAGCAGACTATCATGCATTGTTCTC 532
Query 589 GGCAGCTCAGGATGTAGCCGAGTGCCTTGATAAAAGCCAGAAGAATCTGTTGACCATATG 648
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 533 GGCAGCTCAGGATGTCGCCGAGTGTCTAGATAAAAGCCAGAAGAATCTGTTGACCATATG 592
Query 649 GACATTCAAAGCAGTTGTGGCTAATGACCTCTTCACTGATGACAGCTTTATGTTTTCCAA 708
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 593 GACATTCAAAGCAGTTGTGGCTAATGACCTCTTCACTGATGACAGCTTTGTGTTTTCCAA 652
Query 709 GACTGCTACTCGTATAAAGGAGGCTATATCTGATCTTCCGGTTTCAACCGAGGAGGATGA 768
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 653 GACTGCTACTCAAATAAAGGAGGCTATATCTGATCTTCCGGTTTCAACTGAGGAGGATGA 712
Query 769 TGTGGAAGAAGCAGCTGCTCTTGAAGAAGCAGCGGTGAAAGACAATGGAGATGGCCAGAC 828
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 713 TGTGGAAGAAGCAGCTGCTCTTGAAGAAGCGGCGGTGAAGGAAAATGGAGATGGCCAGAC 772
Query 829 AACGCAGGACGTGGCTGAAGCTGCTTCAGCTGGAGATAATGAGGCTGTCGAGTCTGATCC 888
|||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 773 AACGCAGGACGTAGCTGAAGCTGCTTCAGCTGGAAATAATGAGGATGTCGAGTCTGATCC 832
Query 889 ATTTGGACTAGATGCCTGGATTCCCAGTTCTGGAAAGAAAAATGGTAAAACAAAGATAAA 948
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CTTTGGGCTCGATGCCTGGATTCCCAGTTCTGGAAAGAAAAATGGTAAAACAAAGATAAA 892
Query 949 GAGAACAAATGAAGATCCAGATGCCGAAGAGAATAAGAGGTTTCTCAGGTCAAAAAGAGA 1008
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 893 GAGAACAAATGAAGATACAGATGCTGAAGAGAATAAGAGGTTTCTCAGGTCAAAAAGAGA 952
Query 1009 AGCTTTGATTACATGCTTGGAGATTGCTGCACGCCGTTACAAAGTTCCATGGTGCCAAAC 1068
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AGCTTTGATTACATGCTTAGAGATTGCTGCACGCCGTTACAAAGTTCCATGGTGCCAAAC 1012
Query 1069 AGTTATAGACATATTGGTGAAACATGCCTTTGAGAACGTGTCAAGGTTCACATCACAGCA 1128
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1013 TGTTATAGACATATTGGTGAAACATGCCTTTGACAACGTGTCAAGGTTCACATCACAGCA 1072
Query 1129 GAGACAAGCAGTGGAGAAACTCTGGGCTTCTGTTCGAGAACAACATCTCCGTAGGAAGCA 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GAGACAAGCAGTGGAGAAACTCTGGGCTTCTGTTCGAGAACAACATCTCCGTAGGAAGCA 1132
Query 1189 AGGCAAATCAGTCACAGGAAAACTAGACGTTACAGCTTTTGAATCGCTTCAGGATAAATA 1248
||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1133 AGGTAAATCAGTCACTGGAAAACTCGACGTGACAGCTTTTGAATCGCTTCAGGATAAATA 1192
Query 1249 CGCCAACGAGAAAATGAGCATCCGAAGCTCAGTTGGAGCCAGCGGTGAACGCCGTGCACA 1308
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1193 CGCCAACGAGAAAATGAGCATCCGGAGCTCAGTTGGAGCCAGCGGTGAACGCCGTGCCCA 1252
Query 1309 GCAATGGCTCGGTTAATAAAACAGTTT-CCAAAAAG-GTCTG 1348
||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 1253 GCAATGGCTCGGTTAATAAAACA-TTTACCAAAAAAAGTCTG 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5