BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04570.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477713 jgi|Araly1|477713|fgenesh2_kg.3__414__AT3G04570.1 2137 0.0
> Ahg477713 jgi|Araly1|477713|fgenesh2_kg.3__414__AT3G04570.1
Length=1349
Score = 2137 bits (1157), Expect = 0.0
Identities = 1291/1354 (95%), Gaps = 16/1354 (1%)
Strand=Plus/Plus
Query 1 TTAGTATCATTCTTTGTCGTGTTCTTTTAATTAACC-TTTT-GCAATTTGTCTTGTGTTT 58
||||||||||||||||||||||| |||||||||||| |||| |||| |||| ||||||||
Sbjct 1 TTAGTATCATTCTTTGTCGTGTTGTTTTAATTAACCTTTTTCGCAAATTGTGTTGTGTTT 60
Query 59 CTCACAACACAAAAACTTGTAAAAGTGTTAAAAAATCAAGATCTGAAAAATCTTATCACC 118
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CTCACAACACAAAAACTTGTAAAAGTGTTAAAAAATCAGGATCTGAAAAATCTTATCACC 120
Query 119 GCTTCTAGGTTTTTCAGttttttttCTTCCTTTTCCTGATCTAAATTAACTTATATTTCT 178
|||||||||||||||| |||||||||| | ||||||||||||||| ||||||| ||||
Sbjct 121 TCTTCTAGGTTTTTCAG--TTTTTTCTTCATCTTCCTGATCTAAATTTACTTATAATTCT 178
Query 179 TAGGGTTTCACTTCTTGAAACATTTAATCA-GAAT--TAA-TTAACCTCTCTAGGGCTTT 234
|||||||||||||||| ||| || |||||| ||| || |||||||| ||||||| ||
Sbjct 179 TAGGGTTTCACTTCTTAAAAGATATAATCATAAATCAGAATTTAACCTCCCTAGGGCATT 238
Query 235 CATGGCGAATCCATGGTGGACAGGACAAGTGAACCTATCCGGCCTCGAAACGACGCCGCC 294
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 CATGGCGAATCCATGGTGGACAGGACAAGTGAACCTCTCCGGCCTCGAAACGACGCCGCC 298
Query 295 TGGTTCCTCTCAGTTAAAGAAACCAGATCTCCACATCTCCATGAACATGGCCATGGACTC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGGTTCCTCTCAGTTAAAGAAACCAGATCTCCACATCTCCATGAACATGGCCATGGACTC 358
Query 355 AGGTCACAATAATCATCACCATCACCAAGAAGTCGATAACAACAACAACGACGACGATAG 414
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGGTCACAACAACCATCATCATCACCAAGAAGTCGATAACAACAACAACGACGACGATAG 418
Query 415 AGACAACTTGAGTGGAGACGACCACGAGCCACGTGAAGGAGCCGTAGAAGCCCCCACGCG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGACAACTTGAGTGGAGACGACCACGAGCCACGTGAAGGAGCCGTAGAAGCCCCCACGCG 478
Query 475 CCGTCCACGTGGACGTCCTGCTGGTTCCAAGAACAAACCAAAGCCACCGATCTTCGTCAC 534
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 CCGTCCACGTGGACGCCCTGCTGGTTCTAAGAACAAACCAAAGCCACCGATCTTCGTCAC 538
Query 535 TCGCGATTCTCCAAATGCTCTCAAGAGCCATGTCATGGAGATCGCTAGTGGGACTGACGT 594
|| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 539 GCGTGATTCCCCAAACGCTCTCAAGAGCCATGTCATGGAGATCGCTAGTGGTACTGACGT 598
Query 595 CATCGAAACCCTAGCTACTTTTGCTAGGCGGCGTCAACGTGGCATCTGCATCTTGAGCGG 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 CATCGAAACCCTAGCTACTTTTGCTAGGCGGCGTCAACGTGGCATCTGCATCTTAAGCGG 658
Query 655 AAATGGCACAGTGGCTAACGTCACCCTCCGTCAACCCTCGACCGCTGCCGTTGCGGCGGC 714
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 659 AAACGGCACAGTGGCTAACGTCACCCTCCGTCAACCCTCGACGGCTGCGGTTGCGGCAGC 718
Query 715 TCCTGGTGGTGCGGCTGTTTTGGCTTTACAAGGGAGGTTTGAGATTCTTTCTTTAACCGG 774
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 TCCTGGTGGTGCGGCAGTTTTGGCTTTACAAGGGAGGTTTGAGATTCTTTCTTTAACAGG 778
Query 775 TTCTTTCTTGCCAGGACCGGCTCCACCTGGTTCCACCGGTTTAACGATTTACTTAGCCGG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTCTTTCTTGCCAGGACCGGCTCCACCTGGTTCCACCGGTTTAACGATTTACTTAGCCGG 838
Query 835 TGGTCAAGGTCAGGTTGTTGGAGGAAGCGTGGTGGGCCCATTGATGGCAGCAGGTCCGGT 894
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 839 TGGTCAAGGTCAGGTTGTTGGAGGAAGCGTGGTGGGTCCATTGATGGCGGCTGGTCCAGT 898
Query 895 GATGCTGATCGCCGCCACGTTCTCTAACGCGACTTACGAGAGATTGCCATTGGAGGAGGA 954
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GATGCTCATTGCGGCCACGTTCTCTAACGCGACTTACGAGAGATTGCCATTGGAGGAGGA 958
Query 955 AGAGGCAGCAGAGAGAGGCGGTGGTGGAGGCAGCGGAGGAGTGGTTCCGGGGCAGCTCGG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAGGCAGCAGAGAGAGGCGGTGGTGGAGGCAGCGGAGGAGTGGTTCCGGGGCAGCTCGG 1018
Query 1015 AGGCGGAGGTTCGCCACTAAGCAGCGGTGCTGGTGGAGGCGACGGTAACCAAGGACTTCC 1074
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGGGGGAGGTTCGCCACTGAGCAGCGGTGCTGGTGGAGGCGACGGTAACCAAGGACTTCC 1078
Query 1075 GGTGTATAATATGCCGGGAAATCTTGTTTCTAATGGTGGCAGTGGTGGAGGAGGACAGAT 1134
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1079 GGTGTATAATATGCCCGGAAATCTTGTTTCTAATGGTGGCAGTGGCGGAGGA---CAGAT 1135
Query 1135 GAGCGGCCAAGAAGCTTATGGTTGGGCTCAAGCTAGGTCAGGATTTTAACGTGCGTTAAA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1136 GAGCGGCCAAGAAGCTTATGGTTGGGCTCAAGCTAGGTCAGGATTTTAACGTGCGTTGAA 1195
Query 1195 ATGG-TTTTTAATTTACAGAAGTTAACAATAAGA-TTATAATGATGTTTATTATGATGAT 1252
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1196 ATGGCTTTTTAATTTACAGAAGTTAACAATAAGAATTATAATGATGTTTATTATGATGAT 1255
Query 1253 GA--AAA-CCAGTCAGTTGCTACTTGTTACTAGTGAGCTATATAGTTTGTGGACATTATA 1309
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 GATGAAAACCAGTCAGTTGCTACTTGTTACTAGTGAGCTATATAGTGTGTGGACATTATA 1315
Query 1310 TTATGTTCTCTCTTGACTATGATTATTATTTGCT 1343
||||||||||||||||||||||||||||||||||
Sbjct 1316 TTATGTTCTCTCTTGACTATGATTATTATTTGCT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5