BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04590.2
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477717 jgi|Araly1|477717|fgenesh2_kg.3__418__AT3G04590.2 2385 0.0
> Ahg477717 jgi|Araly1|477717|fgenesh2_kg.3__418__AT3G04590.2
Length=1632
Score = 2385 bits (1291), Expect = 0.0
Identities = 1542/1657 (93%), Gaps = 42/1657 (3%)
Strand=Plus/Plus
Query 23 TCTCTCTAAAAAGGAATGGATCCTAACGAAAGCCACCATcaccaccaacaacaacagctc 82
|||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 1 TCTCTCTAAAAAGGAATGGAACCTAACGAAAGCCACCATCACCA-C--CAACAACAGCTT 57
Query 83 catcacctccaccaacagcaacagcaacagcagcag---cagcaacGACTCACTTCTCCT 139
||||| |||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 58 CATCA---CCACCACCAGCAACAGCAACAGCAGCAGCACCAGCAACGACTCAGTTCTCCT 114
Query 140 TACTTCCACCACCAACTACAGCACCATCACCACCTTCCAACCACCGTAGCAACCACCGCT 199
||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 115 TACTTCCACCACCAACTACAG---CATCACCACCACCCAACCACCGTCGCAACCACCGCT 171
Query 200 TCTACCGGAAACGCCGTTCCATCTTCCAACAATGGGCTTTTCCCTCCGCAGCCTCAGCCA 259
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 172 TCTACCGGAAACGCCGTTCCATCTTCCAACAATGGGCTTTTCCCTCCTCAGCCTCAGCCG 231
Query 260 CAGCACCAGCCTAATGATGGGTCATCTTCTCTCGCGGTGTACCCTCATTCAGTTCCGTCC 319
|| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 232 CAACACCAGCCTAATGATGGGTCATCGTCACTCGCGGTGTACCCTCATTCAGTTCCATCC 291
Query 320 TCGGCTGTGACGGCGCCGATGGAGCCGGTAAAGAGGAAGAGGGGTCGACCAAGAAAGTAT 379
||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct 292 TCGGCTGTGACGGCGCCGATGGAGCCGTTAAAGAGGAAGAGAGGTAGACCAAGAAAGTAT 351
Query 380 GTGACGCCGGAACAAGCCCTAGCGGCTAAGAAATTGGCGTCTTCTGCGAGTAGTTCGTCT 439
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 352 GTGACGCCGGAGCAAGCCCTAGCGGCTAAGAAAATGGCGTCTTCTGCGAGTAGTTCATCT 411
Query 440 GCTAAACAGAGGCGAGAGCTTGCTGCTGTTACCGGTGGTACGGTATCGACTAATTCCGGG 499
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 412 GCTAAACAGAGGAGAGAGCTTGCTGCTGTTACCGGAGGTACGGTATCGACTAATTCCGGA 471
Query 500 TCATCCAAGAAATCTCAGCTTGGTTCTGTCGGGAAAACTGGACAATGTTTTACTCCGCAT 559
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 472 TCATCGAAGAAATCTCAGCTTGGTTCTGTCGGGAAAACTGGACAATGCTTTACTCCGCAT 531
Query 560 ATTGTTAATATAGCTCCTGGCGAGGATGTGGTCCAGAAAATTATGATGTTCGCAAACCAA 619
|| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 532 ATCGTTAATATAGCTCCTGGTGAGGATGTGGTCCAGAAGATTATGATTTTCGCAAACCAA 591
Query 620 AGCAAGCATGAACTATGCGTTCTTTCTGCATCAGGCACTATCTCTAATGCATCCTTGCGC 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AGCAAGCATGAACTATGCGTTCTTTCTGCATCAGGCACTATCTCTAATGCATCCTTGCGC 651
Query 680 CAACCGGCTCCATCAGGAGGCAACTTACCATATGAGGGTCAATACGAGATTCTCTCACTA 739
||||| ||| || ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 652 CAACCAGCTACAGCAGGAGGCAACTTACCACATGAGGGTCAGTACGAGATTCTCTCACTA 711
Query 740 TCTGGATCCTATATCCGAACTGAACAAGGTGGTAAATCCGGCGGCCTTAGCGTTTCTTTA 799
|||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 712 TCTGGATCATATATCCGAACTGAACAAGGTGGTAAAACCGGCGGCCTTAGCGCTTCTTTA 771
Query 800 TCTGCTTCAGATGGTCAGATCATCGGTGGAGCGATTGGTAGCCATCTCACAGCTGCTGGC 859
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 772 TCTGCTTCAGATGGTCAGATCATCGGTGGAGCGATTGGGACCCACCTCACAGCTGCTGGC 831
Query 860 CCGGTTCAGGTGATTCTTGGTACGTTTCAGCTTGATAGAAAGAAGGATGCCGCCGGGAGT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CCGGTTCAGGTGATTCTTGGTACGTTTCAGCTTGATAGAAAGAAGGATGCCGCCGGGAGT 891
Query 920 GGTGGGAAAGGGGATGCTTCAAACAGTGGAAGTCGGTTAACTTCTCCTGTAAGCTCTGGA 979
|||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct 892 GGTGGGAAAGGGGATGCTTCAAACAGCGGAAGTCGGTTAACTTCTCCTGCAAGCACTGGA 951
Query 980 CAGTTGCTTGGCATGGGTTTCCCTCCTGGTATGGAATCTACGGGAAGAAATCCAATGAGG 1039
|||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 952 CAGTTGCTTGGCATAGGTTTCCCTCCTGGTATGGAGTCTACGGGAAGAAATCCAGTGAGG 1011
Query 1040 GGAAACGACGAGCAACATGATCATCATCATCATCAAGCCGGTTTGGGTGGACCTCATCAT 1099
|||||||| ||||| || | ||||||||||||||| ||||||| |||||||||||||||
Sbjct 1012 GGAAACGATGAGCAGCA-G--CATCATCATCATCAACCCGGTTTAGGTGGACCTCATCAT 1068
Query 1100 TTCATGATGCAAGCGCCGCAGGGGATACACATGACACATTCCAGGCCATCTGAATGGCGC 1159
|| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1069 TTTATGATGCAAGCACCGCAGGGGATGCACATGACACATTCCAGGCCAGCTGAATGGCGC 1128
Query 1160 GGAGGAGGCAACAGCGGTCATGATGGCAGAGGCGGTGGCGGGTATGATTTGTCAGGAAGG 1219
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 1129 GGAGGAGGCAACAGCGGTCTTGATGTCAGAGGCGGTGGCGGGTATGATTTGTCAGGTCGG 1188
Query 1220 ATAGGACATGAGTCGTCGGAGAATGGAGATTACGAGCAGCAAATACCGGATTAGCAGAGC 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1189 ATAGGACATGAGTCGTCGGAGAATGGAGATTACGAGCAGCAAATACCGGATTAGAAGAGC 1248
Query 1280 TTCCAGGAGAAGTGTGTAGAGTTTAGATCCCAAGTAGAGAAACAGAAGGC-GAGCAAAGA 1338
||| | |||||||||||||||||||||||||||||||| || |||||| | |||||||||
Sbjct 1249 TTCGACGAGAAGTGTGTAGAGTTTAGATCCCAAGTAGA-AA-CAGAAG-CTGAGCAAAGA 1305
Query 1339 ATCTGAACTGAGAGAGGACTTATTAGACAGAGACTCGTCTGAAGGGTCTTTAATCATAGA 1398
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 1306 ATCTGAACTGAGAGAGGACTTATTAGACAGAGGCTCGTCTGAAGGGTCTTCA-TCATAGA 1364
Query 1399 AAGAAGTTGCTGAGTGATTGCTTTTGTTCTTCTTCTTGGTACGGTGTATTATATTAACTC 1458
|||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1365 AAGAAGTTGCTGAGCGAT-GCTTTTGTTCTTCTTCTTGATACTGTGTATTATATTAACTC 1423
Query 1459 CACAACCttttttttATACTTTCAGTAACGATTCTCCTTCActttcaatttcattccttt 1518
| | |||||||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1424 -A-A-CCTTTTTTTT---CTTTCAATAACGATTCTGCTTCACTTTCAATTTCATTCCTTT 1477
Query 1519 tttttatactctttttcttttcttataat-at-tttttttggtt-ttt-------ctttc 1568
|||| ||||||||||||||||| |||| | | ||||||||||| ||| |||||
Sbjct 1478 TTTT-ATACTCTTTTTCTTTTCCTATATTTACATTTTTTTGGTTGTTTTTTTTTTCTTTC 1536
Query 1569 gtttGTT---ACTAAAAAAGGAAATGCTCTTTTTGTGAAATATATACACTTCGTTTGTTC 1625
|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1537 TTTTGTTGTTACTAAAAATGGAAATGCTCTTTTA-TGAAATATATACACTTCGTTTGTTC 1595
Query 1626 GGTTTCTACTTATGTTAATTATTCATAACCTATCTTA 1662
|||||||||||||||||||||||||||||||||||||
Sbjct 1596 GGTTTCTACTTATGTTAATTATTCATAACCTATCTTA 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62429911555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5