BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04600.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477718 jgi|Araly1|477718|fgenesh2_kg.3__419__AT3G04600.1 2073 0.0
> Ahg477718 jgi|Araly1|477718|fgenesh2_kg.3__419__AT3G04600.1
Length=1249
Score = 2073 bits (1122), Expect = 0.0
Identities = 1208/1250 (97%), Gaps = 3/1250 (0%)
Strand=Plus/Plus
Query 79 TTTTTGTTTT-CCGTCGCGATGGAGGTGGATAAGAAGGACGAGAGAGAGGCTGAATCTTC 137
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTTTTGTTTTCCCGTCGCGATGGAGGTGGATAAGAAGGATGAGAGAGAGGCTGAATCTTC 60
Query 138 GGAGCAAGTGGTGAATCCATGGGAAGTGTCCGCCAAAGACGGCGGGAAGATCGATTACGA 197
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAGCAAGTAGTGAATCCATGGGAAGTGTCCGCCAAAGACGGCGGGAAGATCGATTACGA 120
Query 198 CAAGCTTATTGACAAATTTGGATGTCAAAGGCTTGACGAGTCACTGATTGATCGTGTTCA 257
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 121 CAAGCTTATTGACAAATTTGGCTGCCAAAGGCTTGATGAGTCACTGATTGATCGTGTTCA 180
Query 258 GAGACTGACTTCTCGTCAACCACACGTGTTCCTCCGCCGTAGTGTCTTCTTCGCCCACCG 317
||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct 181 GAGACTGACTTCTCGTCAACCACACGTATTCCTCCGTCGTGGTGTCTTCTTCGCCCACCG 240
Query 318 GGATTTCAATGAGATTTTGGACGCTTATGAGAGAGGAGACAAGTTCTATCTCTACACTGG 377
||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 241 GGATTTCAATGAGATTTTGGATGCCTATGAGAAAGGAGACAAGTTCTATCTCTACACTGG 300
Query 378 AAGAGGACCTTCATCAGAAGCATTGCATTTGGGGCATTTGATTCCTTTCATGTTTACCAA 437
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAGGACCTTCATCAGAAGCTTTGCATTTGGGGCATTTGATTCCTTTCATGTTTACCAA 360
Query 438 ATACTTGCAAGAAGCTTTCAAGGTTCCCCTTGTTATACAGCTCACGGATGATGAAAAAAG 497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 ATACTTGCAAGAAGCTTTCAAGGTTCCCCTTGTTATACAGCTCACGGATGATGAAAAATG 420
Query 498 TATATGGAAGAACTTATCGGTGGAGGAAAGTCAAAGACTTGCCAGAGAAAATGCGAAAGA 557
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATGTGGAAGAACTTATCGGTGGAGGAAAGTCAAAGACTTGCCAGAGAAAATGCGAAAGA 480
Query 558 TATTATTGCTTGTGGATTCGATGTAACAAAGACCTTCATTTTCTCGGACTTCGACTATGT 617
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATAATTGCTTGTGGATTCGATGTAACAAAGACCTTCATTTTCTCGGACTTCGACTATGT 540
Query 618 TGGCGGTGCTTTCTATAAAAATATGGTGAAGGTTGGCAAGTGCGTTACACTTAATAAGGC 677
||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 541 TGGCGGTGCTTTCTATAAAAATATGGTGAGGGTTGCCAAGTGCGTTACGCTTAATAAGGC 600
Query 678 TATGGGAATCTTTGGCTTTTCCGGTGAAGATCCTATCGCGAAACTCAGTTTCCCTCCTGT 737
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 601 TATGGGAATCTTTGGCTTTTCCGGTGAAGATCATATCGGGAAACTCAGTTTCCCTCCTGT 660
Query 738 GCAGGCAGTTCCATCTTTTCCTAGCTCATTCCCACATTTGTTCCCTGGCAAGGACAATCT 797
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 GCAGGCAGTTCCATCTTTTCCTAGCTCATTCCCACATTTGTTCCCTGGAAAGGACAATCT 720
Query 798 CCGCTGCTTGATTCCTTGTGCTATTGACCAGGATCCTTATTTTAGAATGACTCGTGATGT 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCGCTGCTTGATTCCTTGTGCTATTGACCAGGATCCTTATTTTAGAATGACTCGTGATGT 780
Query 858 CGCACCCCGGTTAGGCTATAGCAAGCCCGCCCTGATTGAGTCAACATTTTTTCCTGCGT- 916
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 781 TGCACCTCGGTTAGGCTATAGCAAGCCCGCCCTGATTGAGTCATCATTTTTTCCTGC-TC 839
Query 917 TGCAGGGAGAGAATGGAAAAATGTCTGCTAGTGATCCAAATTCTGCTATCTATGTGACTG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGCAGGGAGAGAATGGAAAAATGTCTGCTAGTGATCCAAATTCTGCTATCTATGTGACTG 899
Query 977 ATTCCGCAAAGGACATTAAAAACAAGATAAACAGATATGCGTTTAGTGGTGGGCAAGACT 1036
|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATACCGCGAAGGACATTAAGAACAAGATAAACAGATATGCGTTTAGTGGTGGGCAAGACT 959
Query 1037 CCATTGAGAAGCACCGAGAACTTGGAGCAAATCTCGAGGTTGACATACCCGTCAAGTATC 1096
|| | ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 960 CCGTCGAGAAGCACAGAGAACTTGGAGCAAATCTGGAGGTAGACATACCCGTCAAGTATC 1019
Query 1097 TGAGTTTCTTCCTCGAAGACGATTCTGAACTAGAACACATTAAAAAGGAATATGGAGAAG 1156
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGAGTTTCTTCCTGGAAGATGATTCTGAACTAGAACACATTAAAAAGGAATATGGAGAAG 1079
Query 1157 GAAGAATGCTAACAGGAGAAGTAAAGAAGAGACTTACGGAAGTGTTGACAGAAATTGTGG 1216
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 GACGAATGCTAACAGGAGAAGTAAAGAAGAGACTTACGGAAGTGTTGACAGAAATGGTGG 1139
Query 1217 AGAGACACCGCAGGGCTCGAGCTGCTGTTACTGATGAGATGGTTGATGCGTTCATGGCGG 1276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1140 AGAGACACCGCAGGGCTCGAGCTGCTGTTACTGATGAGATGGTTGATGCGTTCATGGCCG 1199
Query 1277 TGAGACCTCTCCCAAGCATGTTCGAATAGAAAAAGTCAGAAACCCTTTTT 1326
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1200 TGAGACCTCTCCCAAGCATGTTCGAATAGAAGAAGTCAGAAACCCTTTTT 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5