BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04610.1
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477721 jgi|Araly1|477721|fgenesh2_kg.3__422__AT3G04610.1 3182 0.0
> Ahg477721 jgi|Araly1|477721|fgenesh2_kg.3__422__AT3G04610.1
Length=2024
Score = 3182 bits (1723), Expect = 0.0
Identities = 1950/2054 (95%), Gaps = 37/2054 (2%)
Strand=Plus/Plus
Query 1 ACCCGCCTCCATTGTTACCGGAATCTCTCTCTTTCTCCGCCGAACTTCTTCGAATCAAGT 60
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 1 ACCCGCCTCCATTGTTACCGGAATCTCTCTCTCTCTCCGCCGAACCTCTTCGATTCAAGT 60
Query 61 TTCCGTTTATCACTCTAATATTGTTAAAGTTTCCACTGATACCACCGCTCTAGTCATGGC 120
||||||||||||||||| || |||| ||| ||||| ||||||||||||||||||||||||
Sbjct 61 TTCCGTTTATCACTCTACTACTGTTTAAGGTTCCATTGATACCACCGCTCTAGTCATGGC 120
Query 121 TGAAGCTGAAGATCAGCAAAATTTCGTTGCACACAATGGAGATCAGGTACCAGATCAAGG 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 121 TGAAGCTGAAGATCAGCAAAATTTTGTTGCACACAATGGAGATCAGGTACCAGCTCAGGG 180
Query 181 GTCAGATGAGTTGCATAATGGGTTACCGTACCAGGTTCATGATGAGACCCTTGTTCACCA 240
|| ||||||| ||||||||||||||||||| | | || ||||||||
Sbjct 181 GTTAGATGAGGTGCATAATGGGTTACCGTA-C-----C------AG------GTTCACCA 222
Query 241 ACCATACGAGGT-TGAAGATCCGATTCTTGAACCTCAGCAGTACGAGGTACCAGATCCGA 299
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 223 ACCATACGAGGTAT-CAGATCCGATTCTTGAACCTCAGCAGTACGAGGTACCAGATCAGA 281
Query 300 CTCTTGAACCACAGCAGTACGAGGTACCAGATCAGACTCTTGAACCTCAGCAGTACGAGG 359
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 282 CTCTTGAACCTCAGCAGTACGAGCTACCAGATCAGACTCTTGAACCTCAGCAGTACGAGG 341
Query 360 TTGATGATCAGTTAGAGTATCATCAATACCAGTTGCAGGACCAGGCTAATGAAGATGTCC 419
|| ||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 342 TTCATGATCAATTAGAGTATCAACAATACCAGTTGCAGGACCAGACTCATGAAGATGTCC 401
Query 420 AAGATCATTCGCAAGATGACCTACAATATCAGCCACAAAATCAGGAGCAGTTTCAGTTAC 479
||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 402 AAGATCAGCCGCAAGATGACCTACAATATCAGCCACAAGATCAGGAGCAGTATCAGTTAC 461
Query 480 AAGACGAGGCTCATGATCAGGCTCAGTATCAGGC-GCAAGGTGATGTACAAGATCACAAT 538
|||||||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||
Sbjct 462 AAGACGAGGCTCATGATCAGGCCCAGTATCAGGCAG-AAGGTGAGGCACAAGATCACAAT 520
Query 539 GGTGATGAAGTGCAAGATAAAGTAGAAGATGAGGAAGGAATTCCTGAGCATCTTGAGTCT 598
|||||||| ||||||||||||||||||||||||||||||| | | || |||||||
Sbjct 521 GGTGATGATGTGCAAGATAAAGTAGAAGATGAGGAAGGAA-T--T-----TC-TGAGTCT 571
Query 599 CTACAGAAATCAGAGCCTGAAGAAGATGCGACAGTTGGAGGTGAGGAGAAGAGGTGGCCG 658
||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 572 CTACAGAAATCAGAGTCTGAAGAAGGTGCAACAGTTGGAGGTGAGGAGAAGAGGTGGCCG 631
Query 659 GGATGGCCCGGAGAGACGGTATTCCGTATGCTGGTTCCTGCACAGAAAGTGGGTAGCATC 718
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 632 GGATGGCCCGGAGAGACGGTCTTCCGCATGCTGGTTCCTGCACAGAAAGTGGGTAGTATC 691
Query 719 ATTGGTCGCAAAGGTGATGTCATTAAGAAAATAGTTGAGGAGACAAGGGCTCGAATAAAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 ATTGGTCGCAAAGGTGATGTCATTAAGAAAATAGTTGAGGAGACAAGGGCTCGAATAAAG 751
Query 779 ATTCTCGATGGTCCTCCAGGCACAACAGAAAGAGCTGTTATGGTTTCTGGTAAAGAAGAG 838
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 752 ATTCTCGATGGTCCTCCAGGCACAACCGAAAGAGCTGTTATGGTTTCTGGTAAAGAAGAG 811
Query 839 CCCGAATCATCTCTACCACCTTCTATGGATGGCCTTCTTAGAGTCCACATGCGGATAGTT 898
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 812 CCCGAATCATCTCTACCACCTTCTATGGATGGCCTTCTTAGAGTGCACATGCGGATAGTT 871
Query 899 GATGGTTTGGATGGTGAAGCTTCTCAAGCCCCTCCGCCTTCAAAGGTGTCAACAAGATTA 958
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 872 GATGGTTTGGATGGTGAACCTTCTCAAGCCCCTCCGGCTTCAAAGGTGTCAACAAGATTA 931
Query 959 CTAGTCCCAGCATCTCAGGCTGGAAGTTTGATTGGAAAACAGGGAGGAACAGTTAAAGCT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 CTAGTCCCAGCATCTCAGGCTGGAAGTTTGATTGGAAAACAGGGAGGAACAGTTAAAGCT 991
Query 1019 ATTCAAGAAGCATCCGCTTGTATAGTCAGAGTTCTTGGATCAGAGGATTTACCTGTTTTT 1078
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 992 ATTCAAGAAGCATCCGCTTGTATAGTCAGAGTTCTTGGATCAGAGGATTTGCCTGTTTTT 1051
Query 1079 GCTCTTCAAGACGATAGGGTTGTTGAAGTTGTGGGGGAACCAACAAGTGTTCATAGAGCC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1052 GCTCTTCAAGACGATAGGGTTGTTGAAGTTGTGGGGGAACCAACAAGTGTTCATAAAGCC 1111
Query 1139 TTGGAGCTGATTGCGTCACATCTCAGAAAGTTCTTGGTTGATCGTAGCATCATCCCATTC 1198
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1112 TTGGAGCTGATTGCATCACATCTAAGAAAGTTCTTGGTTGATCGTAGCATCATCCCATTC 1171
Query 1199 TTTGAAAATCAGATGCAAAAGCCAACTCGCCAAATGGACCATATGCCACCACCACACCAG 1258
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1172 TTTGAAAATCAGATGCAAAAGCCAACTCGCCAAATGGATCATATGCCACCACCACATCAG 1231
Query 1259 TCATGGGGTCCTCCTCAAGGTCATGCCCCAAGTGTTGGTGGAGGAGGCTATGGTCACAAC 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 GCATGGGGTCCTCCTCAAGGTCATGCCCCAAGTGTTGGTGGAGGAGGCTATGGTCACAAC 1291
Query 1319 CCACCTCCATATATGCAACCACCTCCTAGACATGATAGTTACTATCCTCCTCCTGAGATG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CCACCTCCATATATGCAACCACCTCCTAGACATGATAGTTACTATCCTCCTCCTGAGATG 1351
Query 1379 CGTCAACCTCCAATGGAGAAACAGCCTCATCAAGGTATATCTGCATATGGTAGAGAGCCT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 CGTCAACCTCCAATGGAGAAACAGCCTCATCAAGGTATATCTGCATATGGTAGAGAGCCT 1411
Query 1439 CCTATGAATGTGCACGTATCATCAGCCCCACCAATGGTCGCTCAGCAAGTTACGCAGCAA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 CCTATGAATGTGCACGTATCATCAGCCCCACCAATGGTCGCTCAGCAAGTTACGCAGCAA 1471
Query 1499 ATGCAGATTCCACTGTCTTATGCTGATGCTGTAATTGGGACGTCGGGTTCAAACATAAGC 1558
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1472 ATGCAGATTCCACTTTCTTATGCTGATGCTGTAATTGGGACATCAGGTTCAAACATAAGC 1531
Query 1559 TACACTAGACGTCTTAGTGGAGCAACAGTAACTATTCAGGAGACCAGGGGAGTACCTGGT 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TACACTAGACGTCTTAGTGGAGCAACAGTAACTATTCAGGAGACCAGGGGAGTACCTGGT 1591
Query 1619 GAAATGACTGTTGAGGTTAGCGGAACTGGCTCACAAGTCCAAACTGCCGTGCAGCTTATT 1678
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1592 GAAATGACTGTTGAGGTTAGCGGAACTGGCTCACAAGTCCAAACTGCTATGCAGCTAATT 1651
Query 1679 CAGAACTTCATGGCTGAAGCTGGAGCGCCGGCACCAGCACAGCCTCAAACTGTAGCACCA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 CAGAACTTCATGGCTGAAGCTGGAGCGCCGGCACCAGCACAGCCTCAAACTGTAGCACCA 1711
Query 1739 GAGCAGCAAGGCTATAACCCATACGCAACACACGGCTCAGTTTACGCAGCGGCTCCAACA 1798
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1712 GAGCAGCAAGGCTATAACCCATACGCAACACACGGCTCAGTCTACGCAGCAGCTCCAACA 1771
Query 1799 AACCCGCCTGGAGGATACGCTACGGATTACAGCTCAGGCTACGGTTACTGATGAAAGATT 1858
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1772 AACCCGCCTGGAGGATACGCTACAGATTACAGCTCAGGCTACGGTTACTGATGAAAGATT 1831
Query 1859 TTAAGTTTCTTTAGAATGTTTTACTAGTAGTTGCAAGCAAGAGTGGAAA-CGCTAGATGC 1917
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1832 TTAAGTTTCTTTAGAATGTTTTACTAGTAGTTGCAAGCAAGAGTGAAAAACGCTAGATGC 1891
Query 1918 CTAATCGAGTATATGTTGTTATTAGCGAGCACTCTGTGTACTGACAATCAATTATTAT-A 1976
||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||||||| |
Sbjct 1892 CTAATTGAGTATATGCTGTTATTAGCGAGCGCCCTGTGTACTGAGAATCAATTATTATTA 1951
Query 1977 T--CACTTGTTTTGAGACTTCTTCATTTGTGTACTATTCATAACATT-GATCTAACCGGA 2033
| || ||||||||||||||||||||||||||||| |||| |||||| | |||| |||||
Sbjct 1952 TATCAGTTGTTTTGAGACTTCTTCATTTGTGTACTGTTCAAAACATTAG-TCTACCCGGA 2010
Query 2034 AATCTTCTTTATAT 2047
||| ||||||||||
Sbjct 2011 AATTTTCTTTATAT 2024
Score = 128 bits (69), Expect = 2e-28
Identities = 75/78 (96%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 281 TACGAGGTACCAGATCCGACTCTTGAACCACAGCAGTACGAGGTACCAGATCAGACTCTT 340
||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 227 TACGAGGTATCAGATCCGATTCTTGAACCTCAGCAGTACGAGGTACCAGATCAGACTCTT 286
Query 341 GAACCTCAGCAGTACGAG 358
||||||||||||||||||
Sbjct 287 GAACCTCAGCAGTACGAG 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77399377840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5