BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04620.1
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477722 jgi|Araly1|477722|fgenesh2_kg.3__423__AT3G04620.1 1184 0.0
Ahg356399 jgi|Araly1|356399|fgenesh1_pg.C_scaffold_8000186 226 2e-58
> Ahg477722 jgi|Araly1|477722|fgenesh2_kg.3__423__AT3G04620.1
Length=752
Score = 1184 bits (641), Expect = 0.0
Identities = 719/756 (95%), Gaps = 7/756 (1%)
Strand=Plus/Plus
Query 1 CTAATTCCCCGAGAGTAACCAACAACCCAAAGCGATCAAAGAACTTTTCCCGCTagagag 60
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1 CTAATTCCCCGAGAGTAACCAACAA---AAAGCGATCAAAGAACTTTTCCCGTTAGAGAG 57
Query 61 agagagagaagaagaagaagaagaaaagttacgcagagagactgaaagaagagtgatcga 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AGAGA-CGAAGAAGAAGAAGAAGAAAAGTTACGCAGAGAGACTGAAAGAAGAGTGATCGA 116
Query 121 tcggagaaagaTGGCGATGGAAGTAGCAACACCGGCTCCGGCACCAATCCCATCGGAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCGGAGAAAGATGGCGATGGAAGTAGCAACACCGGCTCCGGCACCAATCCCATCGGAGAG 176
Query 181 GAACATCGTTCTCGCGCCTGCAACAACAACAACAACCGCCACTGTTGAGACTCACAAGAA 240
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 177 GAACATCGTTCTCGCGCCTGCGACAACAACAACCACCGCCACTGTTGAGACTCACAAGAA 236
Query 241 GAACAGGATCCAAGTTTCCAACACCAAGAAGCCATTGTTCTTCTACGTTAATCTCGCCAA 300
||||||||||||||| |||||||||||||| |||||||||||||| || || ||||||||
Sbjct 237 GAACAGGATCCAAGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAACCTCGCCAA 296
Query 301 GAGGTACATTCAGCAACACAACGAGGTCGAGCTTTCTGCACTTGGAATGGCAATCACAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 GAGGTACATTCAGCAACACAACGAGGTCGAGCTTTCTGCACTTGGAATGGCAATCACTAC 356
Query 361 TGTGGTAACAATCTCTGAGATCTTGAAGAACAATGGACTTGCAACAGAGAAGAAGGTGCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 357 TGTGGTAACAATCTCTGAGATCTTGAAGAACAATGGACTTGCAACAGAGAAGAAGGTGTT 416
Query 421 AACATCGACTGTGGGAATGAAAGATGAGACAAAAGGGAAGATGGTCCAGAAGGCAAAGAT 480
|||||| ||||||||||||||||||||||| ||||| | |||||| ||||||||||||||
Sbjct 417 AACATCTACTGTGGGAATGAAAGATGAGACCAAAGGCAGGATGGTTCAGAAGGCAAAGAT 476
Query 481 TGAGATAGTGTTGGGCAAGTCAGACAAGTTTGACTCTTTGGTGCCACCTGTGACCAACGG 540
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 477 TGAGATAGTGTTGGGCAAGTCAGACAAGTTTGACTCTTTGGTGCCACCAGTTACTAACGG 536
Query 541 CAAGACTCCGGAGGAGGAAGCCAGTGCAGAGACGGAAGCTTCCGTGGAAGCACAAGAAGA 600
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 537 CAAGACCCCGGAGGAGGAAGCTAGTGCAGAGACGGAGGCTTCTGTGGAAGCACAAGAAGA 596
Query 601 AGTTGCCGCTGCCACCGAGGTCTAGGTTGGAGCCGGTTGAGAGATTTACTGCAGAAG--G 658
|||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||| |
Sbjct 597 CGTTGCCGCAGCCACCGAGGTCTAGGTTGGAGCTGGTTGAGAGATATACTACAGAAGAAG 656
Query 659 -ACTGATTTCTCTTTTACTATGTTTTGTTGGCTTTTGTTTCGTTTGTGACATATCGAACA 717
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 657 GATTGATTTCTCTTTTACTATGTTTTGTTGGTTTTTGTTTCGTTTGTGACATATCGAACA 716
Query 718 TAATACTCTAGATATGATAGTAATTGTTTGTTTAGC 753
||||||||||||||||||||||||||||||||||||
Sbjct 717 TAATACTCTAGATATGATAGTAATTGTTTGTTTAGC 752
> Ahg356399 jgi|Araly1|356399|fgenesh1_pg.C_scaffold_8000186
Length=504
Score = 226 bits (122), Expect = 2e-58
Identities = 139/147 (95%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 131 ATGGCGATGGAAGTAGCAACACCGGCTCCGGCACCAATCCCATCGGAGAGGAACATCGTT 190
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCGATGGAAGTAGTAACACCGGCTCCGGCACAAATCCCATCGGAGAGGAACATCGTT 60
Query 191 CTCGCGCCTGCAACAACAACAACAACCGCCACTGTTGAGACTC-ACAAGAAGAACAGGAT 249
||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 61 CTCGCTCCGGCAACAACAACAACAACCGCCACTGTTGAGAATCCACAAGAAGAACAGGAT 120
Query 250 CCAAGTTTCCAACACCAAGAAGCCATT 276
| ||||||||||||||||||| |||||
Sbjct 121 C-AAGTTTCCAACACCAAGAAACCATT 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27982221078
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5