BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04630.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477724 jgi|Araly1|477724|fgenesh2_kg.3__425__AT3G04630.1 1753 0.0
> Ahg477724 jgi|Araly1|477724|fgenesh2_kg.3__425__AT3G04630.1
Length=1238
Score = 1753 bits (949), Expect = 0.0
Identities = 1160/1255 (92%), Gaps = 42/1255 (3%)
Strand=Plus/Plus
Query 1 CCATTCCAAAATAGTCACCGCCCaaaaaaaaaaaaaaaaaaaaaaaTCCtttttttCTCT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CCATTCCAAAATAGTCACCGCCC---------AAAAAAAAAAAAAATCCTTTTTTTCTCT 51
Query 61 TCTT--------ga-gagagagaaagagagagggagaCAAGTTTGTTCTGGATAAAAAGA 111
|||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 TCTTGAGAGAGAGAGGAGAGAGAAAGAGAGAGGGAGACAAGTTTGTTCTGGATAAAAAGA 111
Query 112 CAATTCATTTCTATTTTAATTGTCTGCAAAATTCTCACGGGCCATCGGAGAGAGGAGACA 171
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 112 CAATTCATTTCTATTTT--TTGTCTGCAAAATTCTCACGGGCCATCGGAGAGAGGAGACA 169
Query 172 GAGGTGGTGCTGCACAAGAATCCTTCCTCCTATATCCTAC-AAGACTT-TGGAATGGGAA 229
||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 170 GAGGTGGTGGTGCACAAGAATCCTTCCTCC--TATCCTACAAAGACTTGTGGAATGGGAA 227
Query 230 GAGAAGTTGTTGAGGTGCTTATGGACCGAAACGCCGACGTTTCAAGCGCTAGAGTTCATG 289
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 228 GAGAAGTTGTTGAGGTGCTTATGGACCGAAACGCTGACGTTTCAAGCGGTAGAGTTCACG 287
Query 290 TTGCTCCTAAGATAGCTGCAGAGGAGACTGATGAGGAATTTGAAGTCAAAGAATGCACAG 349
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 288 TTGCTCCTAAGATAGCTGCAGAGGAGACTGATGAGGAATTTGAAGTCAAGGAATGCACAG 347
Query 350 AGGAGAAGTCTCTTTCTGAGAATGCACCAAATGTTGGATCTGCTGAGAGAGTTGGAGCTC 409
| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 348 AAGAGAAGTCTCTTTCTGAGAATGCACCAAATGTTGGATCTGCTGAGAGAATTGGGGCTC 407
Query 410 AGAAATCACCTAAAACCCGTAATGGAAATGCTAAAGTTTCAAAGCAGCAGGATGCTCCTC 469
| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 408 ACAAATCGCCTAAAACTCGTAAAGGAAATGCTAAAGTTTCAAAGCAGCAGGATGCTCCTC 467
Query 470 TTCTCGCGGTGAGGAAGCCATTGCAACCCGAGAACAAGAAGCATATTGATGACGAAGATA 529
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 468 TTCTCCCGGTGAGGAAGCCATTGCAACCCGAGAACAAGAAGCATATCGATGACGATGATA 527
Query 530 ATTGCTCCATTGCTTCTTCCGTTGCAACTTCCATGAGGATGGGTAAGTCTGGATTGACTT 589
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 528 ATTGCTCCATTGCTTCTTCCGTGGCAACTTCCGTGAGGATGGGTAAGTCTGGATTGACTT 587
Query 590 ATGGAAGTGCTCCAACGTTTAGGAGTGCTCAACGTGCTGAGAAACGCAAGGAGTATTACC 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 ATGGAAGTGCTCCAACGTTTAGGAGTGCTCAACGTGCTGAGAAACGCAAGGAGTATTACC 647
Query 650 AAAAGCTCGAGGAGAAAAACCAAGCGCTTGAAGCTGAGAGGAACGAGCTTGAACAGAGGC 709
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 648 AAAAGCTCGAGGAGAAAAACCAAGCGCTTGAAGCCGAAAGGAACGAGCTTGAACAGAGGC 707
Query 710 AAAAGGATGAACAAGAAGCAGCCTTGAAGCAACTTAGAAAGAATCTCAAGTTCAAGGCTA 769
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 708 AAAAGGAAGAACAAGAAGCAGCCTTGAAACAACTTAGAAAGAATCTCAAGTTCAAGGCTA 767
Query 770 AACCCGTCCCCAACTTCTACTACGAGGCACCTCCTGCGAAACCTGAGCTCAAGAAGCTTC 829
|||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 768 AACCCGTCCCTAACTTCTACTACGAGGCACCTCCTGCAAAAGCTGAGCTCAAGAAGCTTC 827
Query 830 CTTTGACACGTCCCAAGTCGCCAAAACTGATCCTTTCTCGGAGAAAAAGCTTCAGCGACG 889
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 828 CTTTGACGCGTCCCAAGTCGCCAAAACTCATCCTTTCTCGGAGAAAAAGTTTCAGCGACG 887
Query 890 CAGTCAGCTCGTCTTCCCGTGAAGAGATTCTGAAGACAGTCTCTAACCGGAACCGACACA 949
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 888 CAGTCAGCTCGTCTTCTCGTGAAGAGGTTCTGAAGACAGTCTCTAACCGGAACCGACACA 947
Query 950 GCACTGGAACAGTTCAGAACAAAGACGATGATCACAGGAACAAGAACACCAATGCTGCGC 1009
||||||||||||||||||||||||| | ||||| | |||||||||||||||| |||| |
Sbjct 948 GCACTGGAACAGTTCAGAACAAAGA--A-GATCAGAAGAACAAGAACACCAATTCTGCTC 1004
Query 1010 ACGACAGCCCTCGTGTCAGATCAGGCAAAGGTAAATCCGGATTGAAACCAGTGAACGAGT 1069
|||||||||||||||||||||| || |||| |||| ||| |||||||||||||| |||||
Sbjct 1005 ACGACAGCCCTCGTGTCAGATCTGGTAAAGCTAAAGCCGCATTGAAACCAGTGACCGAGT 1064
Query 1070 CCTCAGAAGAAGCTT--GAAATTTCAAAAGATGATG--C--T--TT-GTTGGTCTAACTT 1120
|||||||||||||| || || ||||||||||| | | || |||||||||||||
Sbjct 1065 GCTCAGAAGAAGCTTCTGAGGCTTGAAAAGATGATGAACGATGCTTTGTTGGTCTAACTT 1124
Query 1121 GATCTTGCCGGAGAAAATGTAAAATCAAA-----GACTCTTTGTTTTTCGGTTATTTCCG 1175
||||| ||||||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 1125 GATCTCACCGGAGAAAATTTAAAATCAAAACAAAGACTCTTTGTTTTTCGGTTATTTTCG 1184
Query 1176 GTATACGTTTGGTTCACTATGTAACTGTCTTTTTTCGATTTTAAGTTTTAACATG 1230
||||| ||||||||||| |||||| ||||||| | || |||||||||||||||||
Sbjct 1185 GTATATGTTTGGTTCACAATGTAATTGTCTTTCT-CGGTTTTAAGTTTTAACATG 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5