BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04640.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477726 jgi|Araly1|477726|fgenesh2_kg.3__427__AT3G04640.1 769 0.0
> Ahg477726 jgi|Araly1|477726|fgenesh2_kg.3__427__AT3G04640.1
Length=655
Score = 769 bits (416), Expect = 0.0
Identities = 600/683 (88%), Gaps = 36/683 (5%)
Strand=Plus/Plus
Query 20 ATATATTAAAATACGCGTTCAGATATTCAAATTAGAAT-A-GTCATATAGTCACGCGGTT 77
||||||||||||| |||||||||||||||||||||||| | | || |||||||||||||
Sbjct 1 ATATATTAAAATATGCGTTCAGATATTCAAATTAGAATAATTTTATTTAGTCACGCGGTT 60
Query 78 ATAAACAATTCGGTGTATAAATTGTAAGTCACACAGAAAAAGAAAGAAACGAAACGAAAC 137
||||||||||||||||||||||| ||||||||||||||| ||||| ||||| | ||||
Sbjct 61 ATAAACAATTCGGTGTATAAATTTTAAGTCACACAGAAACAGAAATAAACG---C-AAAC 116
Query 138 G-AATTATGGATTTGAAGAAAGCATCTTTG-TTTTTATTCCTTCTTCTCTGTCTCCACCT 195
| |||||||||||||||||||||| ||| | ||||| | | ||||||||||||||||
Sbjct 117 GAAATTATGGATTTGAAGAAAGCAACTTCGCTTTTT-TACTTTCTTCTCTGTCTCCA--- 172
Query 196 GCAACTGCAACACCACTTTGCTCACGCGGTCTCGCGATCTTCAACAAGTTTAGCCTTCGT 255
| |||||||||||||||||||||||| |||||||||||| | || ||| |||
Sbjct 173 -C--CTGCAACACCACTTTGCTCACGCGATCTCGCGATCTT---C-----TA-CCTCCGT 220
Query 256 TGATCCAAACCATGATGATCTCCCGTTTCAAG-AAGTAGAATTGAAGCCAGACGGTGACG 314
||||||||||||||| ||||| ||| ||| || || ||||||||||| |||||||||
Sbjct 221 TGATCCAAACCATGACGATCTTCCGGTTC-AGCCTGTCGAATTGAAGCCGGACGGTGACT 279
Query 315 TAATCGAAGCCAATTTACCGAAATTAACAGTCGTTGTTAAGAAAGGCGGCggaggaggag 374
|||||| ||||||||| || ||||| ||||| ||||||||||| |||||||| ||||
Sbjct 280 TAATCGCCGCCAATTTAACGGAATTAGCAGTC---GTTAAGAAAGGAGGCGGAGGTGGAG 336
Query 375 gcagaggtggaggcggtttcggcggagggggacgcagtttcggcggaggagggagTTCTA 434
||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 337 GCAGAGGCGGAGGCGGCTTCGGCGGAGGAGGACGCAGTTTCGGTGGAGGAGGGAGTTCTA 396
Query 435 GCAGAGGCGGTGGAGGAAGTTCTAGCAGAGGCGGAGGAGGGAGTTCTAGCAGAGGAGGA- 493
|||||||||| || || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 397 GCAGAGGCGGAGGGGGGAGTTCTAGCAGAGGCGGAGGAGGGAGTTCTAGCAGAGGCGGAG 456
Query 494 GGATTACGTCCGATTCCGATTTATGGCGGTGGAACGCACCGCAGTGGTCATCATTCAAGC 553
||| |||||||||||||||||||||||||||| |||||||| ||||||| | |||||||
Sbjct 457 GGA-TACGTCCGATTCCGATTTATGGCGGTGGTTCGCACCGCGGTGGTCACCGTTCAAGC 515
Query 554 GGCGGCCGGGAAACTGCTAGTGGTTGGTTAGGTCTATCGATTTTAGCCGGTTTAGG-TTT 612
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| || |||
Sbjct 516 GGCGGCCGGGAAACTGCTAGCGGTTGGTTAGGTTTATCGATTTTAGCCGGTTT-GGTTTT 574
Query 613 GGTTTTTTAAAG-CTTCTATATTTGATTTACCGGTTTAGGTTAAATGTTTGATGCCGGTT 671
|||||| | | | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GGTTTTCT-AGGTTTTCT-TATTTGATTTACCGGTTTAGGTTAAATGTTTGATGCCGGTT 632
Query 672 TTGCTTTCCACTGGTTTGCTCTC 694
| |||||||||||||||||||||
Sbjct 633 TCGCTTTCCACTGGTTTGCTCTC 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5