BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04650.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477729 jgi|Araly1|477729|fgenesh2_kg.3__430__AT3G04650.1 2595 0.0
Ahg951908 jgi|Araly1|951908|scaffold_24800001.1 130 4e-29
> Ahg477729 jgi|Araly1|477729|fgenesh2_kg.3__430__AT3G04650.1
Length=1637
Score = 2595 bits (1405), Expect = 0.0
Identities = 1570/1648 (95%), Gaps = 17/1648 (1%)
Strand=Plus/Plus
Query 1 AAATTTATCGGAGCCTCCCTCCAAAATTCAACAATGGCCACTTCTTTAATGTCTCTGTCT 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATTTATCTTAGCCTCCCTCCAAAATTCAACAATGGCCACTTCTTTAATGTCTCTGTCT 60
Query 61 TCTTCATTTCTTCAACCTCTGAAACTCAAAACCCTAGCACAACCCAGAAACACTGACTTA 120
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 61 TCTTCGTTTCTTCAACCTCTGAAACTCAAAACCCTATCAAAACCCAGAAACACTGACTTA 120
Query 121 TCTACCACCAGAAAAATCATAACAACATGCGATTCCCAAAACAACACTGGTAAGTCAAAC 180
|||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 121 TCTACCACCAGAAAGATTATAACAACATGCGATTCACAAAAGAACACTGGGAAGTCTAAC 180
Query 181 CCCAGCAGCAGAAACCCTAATTTCCAGAAACGGCGAAACTCCTCCAAGTATGGGACTTCT 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAAGCAGCAGAAACCCTAATTTCCAGAAACGGCGAAACTCCTCCAAGTATGGGACTTCT 240
Query 241 AGAAGGTCGATCCTCAAGAAATCGTTTTTACAAGAGCAAGTTACTTTCACCGCACGGGTC 300
||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 241 AGAAGGTCGATACTCAAGAAATCGTTCTTACAAGAGCAAGTTACCTTCACCGCTCGAATC 300
Query 301 TCTGATGACCCCCACGTGGCAATTATCGGTGGAGGAATGGCGGGTTTGGTCTGCGCATTG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TCTGATGACCCCCACGTGGCGATTATCGGTGGAGGAATGGCGGGTTTGGTCTGCGCACTG 360
Query 361 AACCTGGAAGCTCGTGGCGTCCAGTCCACAGTTTTCGATACGGGGATACATGGGTTAGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACCTGGAAGCTCGTGGCGTCCAGTCCACAGTTTTCGATACGGGGATACATGGGTTAGGA 420
Query 421 GGAAGACTTGGAACAAGAATTATTGAACCACAGGGACTAATTTTCGATCACGCTGCTCAA 480
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GGAAGACTTGGAACAAGGATTATTGAACCACAGGGACTTATTTTCGATCACGCTGCTCAA 480
Query 481 TTCTTCACCGCGGATGATTCTCGGTTTATCAAATTGGTCGATGGGTGGTTAGAGAAAGGA 540
|| ||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 481 TTTTTCACTGCAGATGATTCTCGGTTTATCAAATTGGTTGATGGATGGTTAGAGAAAGGA 540
Query 541 CTTGTTCGAGAGTGGAAAGGTGCCGTGGGAGAGCTTGAAATTGGAGGTAGCTTCTCACAG 600
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 541 CTTGTTCGAGAGTGGAAAGGTGCTGTGGGAGAGCTTGAAGTTGGAGGTAGCTTCTCACAG 600
Query 601 TTTCCCTCATCATCACCTCCAAGATACATTGCTGCTAATGGCATGCGATCTCTCGCTGAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTCCCTCATCATCACCTCCAAGATACATTGCTGCTAATGGCATGCGATCTCTCGCTGAT 660
Query 661 TCTTTGCTATTAGAGAGTCAAATGGTGAATCTGGTAAGGCCTTGTTGGATCAGTAAGTTG 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCATTGCTATTAGAGAGTCAAATGGTGAATCTGGTAAGGCCTTGTTGGATCAGTAAGTTG 720
Query 721 GAACCACTTAATGGTATGTGGCATTTAAGTGAGAATGGAACACCTCGTGGTCAGTTTGAT 780
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGCCACTTAATGGGATGTGGCATTTAAGTGAGAATGGAACACCTCGTGGTCAGTTTGAT 780
Query 781 GTCATAGTTATTGCTCATAATGGTAAATGCGCCAATCGCTTGCTTTCAGCATCAGGCTTG 840
||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 781 GTCATTGTCATTGCTCATAATGGTAAATGTGCAAATCGCTTGCTTTCAGCATCAGGCTTG 840
Query 841 CCCCTAGTGGCTAAACAGATGAAGAAACTGGATTTGAGTTCAATATGGGCGCTATTAGCA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCCCTAGTGGCTAAACAGATGAAGAAACTGGATTTGAGTTCAATATGGGCGCTATTAGCA 900
Query 901 GCTTTTGATGATCCTCTTCCCACAGTGAACTTTGAGGGAGCGTTTGTGAAAGGAGTTGAA 960
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCTTTTGATGATCCTCTTCCTACAGTGAACTTTGAGGGAGCGTTTGTGAAAGGAGTTGAA 960
Query 961 TCACTGTCTTGGATGGGAAATAACTCTGCAAAGCTTGGAAATGGCAGAACTCCACCACAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 961 TCACTGTCTTGGATGGGAAATAACTCTGCAAAGCTTGGAAATGGCAGAACTCCAC-A--T 1017
Query 1021 TGTTGGACTTTTTTCAGTACTGCGGCATATGGGAAACAGAACAAAGTTCCTCAGGAAAAC 1080
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1018 TGCTGGACTTTTTTCAGTACTGCAGCATATGGGAAACATAACAAAGTTCCTCAGGAAAAC 1077
Query 1081 ATCCCAACGGTCACGGCAGAGAAAGTTAAAGCCGGGATGCTTCAAGGTGTGGAAATCGCA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATCCCAACGGTCACGGCAGAGAAAGTTAAAGCCGGGATGCTTCAAGGTGTGGAAATCGCA 1137
Query 1141 TTGGGGTTGCCTGAAGGCTCACTTCCTAAACCGGTTTATACACGTCTCCAGCTATGGGGA 1200
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 1138 TTGGGGTTGCCTGAAGGCTCGCTTCCTAAACCCGTTTACACACGTCTCCAGCTATGGGGA 1197
Query 1201 GCAGCTTTGCCGAAGAACACTCCTGCAGTTCCATGTATATTTGATCCACAAGGCCGTGCT 1260
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1198 GCAGCTTTGCCGAAGAACACTCTTGCAGTTCCATGTATATTTGATCCACAAGGCCGTGCT 1257
Query 1261 GGTATATGCGGTGATTGGCTTCTCGGTTCTAACTTAGAATCTGCAGCTATAAGCGGTGCA 1320
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1258 GGTATATGCGGTGATTGGCTTCTCGGTTCTAACTTAGAATCTGCAGCTTTAAGCGGTGCA 1317
Query 1321 GCCTTAGGAAACCATATTGCGGAATTCTTACAGAACGGTGAAGCTAATCCAGAAGAATTT 1380
|||||||||||||||||||| |||||| | ||||||||||||||||| || ||||| |||
Sbjct 1318 GCCTTAGGAAACCATATTGCAGAATTCCTGCAGAACGGTGAAGCTAACCCGGAAGAGTTT 1377
Query 1381 GCAATCGGTTTACATGATAGGTTAAGTCCTCTTGCTGGCCATGATATTGGTCAGTTTCCT 1440
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1378 GCAATCGGTTTACATGATAGGTTAAGTCCTCTTGATGGCCATGATATTGGCCAGTTTCCT 1437
Query 1441 GGTTTAACATCAGTGGGAGAAAAGGAAGAAGCTAATGCATATCA-GCTGCTGTGAATACA 1499
|||||||| ||||||||||||||||||||||| |||| |||||| | | |||||||||||
Sbjct 1438 GGTTTAACTTCAGTGGGAGAAAAGGAAGAAGCGAATGTATATCAAG-TACTGTGAATACA 1496
Query 1500 --TCAGTCTACTGTTACTTGACGAAAAAGCTAAGAAGTTTTGCAAATTAAGCTTACAGTG 1557
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1497 CATCAGTCTACTGTTACTTGACGAAAAAGCTAAGAAGTTTGGCAAA----GCTTACAGTG 1552
Query 1558 ATAT---CAGTTTCTACTTAGAGGCTCACCATTTTCAGCCTCCTTCTTCATTGGTGACAA 1614
|||| ||||||| ||||| ||||||||||||||||| || | |||||||||||||||
Sbjct 1553 ATATAATCAGTTTCCACTTATAGGCTCACCATTTTCAGACT--T-CTTCATTGGTGACAA 1609
Query 1615 AACCACAGCCGATTTGAGGTGCTATATG 1642
||||||||||||||||||||||||||||
Sbjct 1610 AACCACAGCCGATTTGAGGTGCTATATG 1637
> Ahg951908 jgi|Araly1|951908|scaffold_24800001.1
Length=331
Score = 130 bits (70), Expect = 4e-29
Identities = 81/86 (94%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 1104 AGTTAAAGCCGGGATGCTTCAAGGTGTGGAAATCGCATTGGGGTTGCCTGAAGGCTC-AC 1162
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 215 AGTTAGAGCTGGGATGCTTCAAGGTGTGGAAATCGCATTGGGGTTGCCTGAAGGCTCGA- 273
Query 1163 TTCCTAAACCGGTTTATACACGTCTC 1188
|||||||||| |||||||||||||||
Sbjct 274 TTCCTAAACCCGTTTATACACGTCTC 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5