BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04660.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340616 jgi|Araly1|340616|fgenesh1_pg.C_scaffold_3000379 1657 0.0
> Ahg340616 jgi|Araly1|340616|fgenesh1_pg.C_scaffold_3000379
Length=1272
Score = 1657 bits (897), Expect = 0.0
Identities = 1077/1166 (92%), Gaps = 4/1166 (0%)
Strand=Plus/Plus
Query 69 atgaagaaaaggggaaggaagtctaagaaaccagaagaaaaaagaGCTGAATACGACCCG 128
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1 ATGAAGAAAAGGGGAAGGAAGTCTAAGAAGCCAGAAGAAAAAAGAGATGAATACGACCCG 60
Query 129 AGTTCGATTCTTCCTCTGGAACTGAAAATAGAGATTCTCATG-AAGTCACCGCCGAAATC 187
||||||||||||||||||||||||||| |||||||||| || || | | |||||||||
Sbjct 61 TGTTCGATTCTTCCTCTGGAACTGAAAACAGAGATTCTCTTGAAACT-GCTGCCGAAATC 119
Query 188 CATAGCCAAGCTAGGTTTCGTTTCAAATCATTGGTCATCGATAATCCGCGGCCAAGTTTT 247
|||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 120 CATAGCCAGGCTAGGTTTCGTTTCAAATCACTGGTCATCAATAATCCGCGGCCAAGATTT 179
Query 248 CACCGACTTGTACATGAGACGATCTTTGGCTCATCCACGACTTCTTTTCTCAGTGTACCG 307
|||| ||||||||||||| |||||||||||||| || || |||||||||||||| |||||
Sbjct 180 CACCAACTTGTACATGAGTCGATCTTTGGCTCAGCCGCGTCTTCTTTTCTCAGTCTACCG 239
Query 308 TCCCAACATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAAGATCCGTCTTCTGATCA 367
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TCCCAACATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTCTGATCA 299
Query 368 TCGTAGCGTCAGTTACACTCTGAATTCAGATCTACGGTACTCATTTTCTCCACCCATCGG 427
|||||| |||||||| ||||| | || |||||||| |||| |||||||||||||| ||
Sbjct 300 TCGTAGGGTCAGTTATACTCTTAGCTCGGATCTACGTTACTGGTTTTCTCCACCCATGGG 359
Query 428 CGGTTTGATATTCGGTCAAAACAATACTAAAGCTATGATTGGAAACCCTAGTACGGGTCA 487
||||||||| || |||| ||| ||||||||| || |||||||||||||||||||||||
Sbjct 360 CGGTTTGATCTTTGGTCGAAAGGGTACTAAAGCCATTATTGGAAACCCTAGTACGGGTCA 419
Query 488 GTTTGTACCTTTACCTAGAATCAAAACGCAGAGAAAGCACATTTTCTCCATTTTTGGATA 547
|| ||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 420 ATTCGTATCTTTACCTAGAGTCAAAACGCAGAGAAAGGACATATTCTCCATTTTTGGATA 479
Query 548 TGATCCAGTTAATGATTTGTACAAAGTCTTGTGTATGACGGTAAGAACTCTACGTGGACC 607
||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||||||| |
Sbjct 480 TGATCCAGTTAATGATTTGTATAAAGTGTTGTGCATGACGGTAATAACTAAACGTGGATC 539
Query 608 ACATTATTTT-AGATGGGAAGATCCTATGTGGGAGGAGCCTATGACAGAGGAGCATCAAG 666
||| |||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 ACAAGCTTTTAAG-TGGGAAGATCCTATGTGGGAGGAGCCTATGTCAGAGGAGCATCAAG 598
Query 667 TTTTCACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTAAGTATCTACATCGTC 726
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 599 TTTTCACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTCACTATCTACATCGTC 658
Query 727 ATCATTCTGGATCTCAAGGGATATGTAGAGATGGGGTGATGTATTATTTAGCTTCTTTCA 786
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 659 ATCATTCTGGATCTCAAGGGATATGTAGGGATGGGGTGTTGTATTATTTAGCTTCTTTCA 718
Query 787 ACGATAAACGATCTCTGATGAGCTTTGATCTGAGCTCTGAAGAATTTAATGTTACTAAGC 846
| |||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct 719 AGGATAAAAGATCTCTGATGACCTTTGATCTGAGCTCTGAAGACTTTAATGTTGCTAAGC 778
Query 847 TACCTGAGGATTATATATTACAACAGTTTGGTAATATGGTGGACCATAGTGGAAAGATAG 906
||||||||||||||| |||||||||||||||| || ||||| || |||||||||||||||
Sbjct 779 TACCTGAGGATTATACATTACAACAGTTTGGTTATTTGGTGAACTATAGTGGAAAGATAG 838
Query 907 CTATAGTGAGTCAGGCATACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGTCAGCA 966
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 839 CTATAGTGACTCAGGCATACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGCCAGCA 898
Query 967 AAGAAGAGTGGTCAAAAGTTGCTGCCATAGTTCCTTCTATTACAGATATAGTTGGGAATG 1026
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 899 AAGAAGAGTGGTCAAAAGTTGCTGCCGTAATTCCTTCTATTACAGATATAGTTGGGAATG 958
Query 1027 ATCAAAGAGTCATTTTCAGGGGTATACTTTCTACTGGTGAGATTATACTTTCACTGCTCC 1086
|||||| |||||| ||||| ||||||||| |||||||||||||||||||| |||||||||
Sbjct 959 ATCAAATAGTCATATTCAGTGGTATACTTCCTACTGGTGAGATTATACTTGCACTGCTCC 1018
Query 1087 CAACCCCCAAGCCGCCCTTCTTTTTTCTCTGTTACGATCCCAAGGAAAAAACTGCTAGAA 1146
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 CAACCCCCAAGCCGCCCTTCTTTTTTCTCTGTTACGATCCCAAGGAAAAAAATGCTAGAA 1078
Query 1147 AAGTTGTGATTCAAGGAATTGGAGAAGACTATGCTGCTATTAATGTCTTTTTCGATCACG 1206
||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||| |
Sbjct 1079 AAGTTGTGATTGAAGGAATTGGAGAAGACTCTGCTGCGGTCAATGTCTTTTTCGATCATG 1138
Query 1207 TAGAGAGTCATATGGTTCTGTCGAAG 1232
|||||||||||||||||||||| |||
Sbjct 1139 TAGAGAGTCATATGGTTCTGTCCAAG 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5