BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04660.1 Length=1241 Score E Sequences producing significant alignments: (Bits) Value Ahg340616 jgi|Araly1|340616|fgenesh1_pg.C_scaffold_3000379 1657 0.0 > Ahg340616 jgi|Araly1|340616|fgenesh1_pg.C_scaffold_3000379 Length=1272 Score = 1657 bits (897), Expect = 0.0 Identities = 1077/1166 (92%), Gaps = 4/1166 (0%) Strand=Plus/Plus Query 69 atgaagaaaaggggaaggaagtctaagaaaccagaagaaaaaagaGCTGAATACGACCCG 128 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 1 ATGAAGAAAAGGGGAAGGAAGTCTAAGAAGCCAGAAGAAAAAAGAGATGAATACGACCCG 60 Query 129 AGTTCGATTCTTCCTCTGGAACTGAAAATAGAGATTCTCATG-AAGTCACCGCCGAAATC 187 ||||||||||||||||||||||||||| |||||||||| || || | | ||||||||| Sbjct 61 TGTTCGATTCTTCCTCTGGAACTGAAAACAGAGATTCTCTTGAAACT-GCTGCCGAAATC 119 Query 188 CATAGCCAAGCTAGGTTTCGTTTCAAATCATTGGTCATCGATAATCCGCGGCCAAGTTTT 247 |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| ||| Sbjct 120 CATAGCCAGGCTAGGTTTCGTTTCAAATCACTGGTCATCAATAATCCGCGGCCAAGATTT 179 Query 248 CACCGACTTGTACATGAGACGATCTTTGGCTCATCCACGACTTCTTTTCTCAGTGTACCG 307 |||| ||||||||||||| |||||||||||||| || || |||||||||||||| ||||| Sbjct 180 CACCAACTTGTACATGAGTCGATCTTTGGCTCAGCCGCGTCTTCTTTTCTCAGTCTACCG 239 Query 308 TCCCAACATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAAGATCCGTCTTCTGATCA 367 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 240 TCCCAACATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTCTGATCA 299 Query 368 TCGTAGCGTCAGTTACACTCTGAATTCAGATCTACGGTACTCATTTTCTCCACCCATCGG 427 |||||| |||||||| ||||| | || |||||||| |||| |||||||||||||| || Sbjct 300 TCGTAGGGTCAGTTATACTCTTAGCTCGGATCTACGTTACTGGTTTTCTCCACCCATGGG 359 Query 428 CGGTTTGATATTCGGTCAAAACAATACTAAAGCTATGATTGGAAACCCTAGTACGGGTCA 487 ||||||||| || |||| ||| ||||||||| || ||||||||||||||||||||||| Sbjct 360 CGGTTTGATCTTTGGTCGAAAGGGTACTAAAGCCATTATTGGAAACCCTAGTACGGGTCA 419 Query 488 GTTTGTACCTTTACCTAGAATCAAAACGCAGAGAAAGCACATTTTCTCCATTTTTGGATA 547 || ||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||| Sbjct 420 ATTCGTATCTTTACCTAGAGTCAAAACGCAGAGAAAGGACATATTCTCCATTTTTGGATA 479 Query 548 TGATCCAGTTAATGATTTGTACAAAGTCTTGTGTATGACGGTAAGAACTCTACGTGGACC 607 ||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||||||| | Sbjct 480 TGATCCAGTTAATGATTTGTATAAAGTGTTGTGCATGACGGTAATAACTAAACGTGGATC 539 Query 608 ACATTATTTT-AGATGGGAAGATCCTATGTGGGAGGAGCCTATGACAGAGGAGCATCAAG 666 ||| |||| || |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 540 ACAAGCTTTTAAG-TGGGAAGATCCTATGTGGGAGGAGCCTATGTCAGAGGAGCATCAAG 598 Query 667 TTTTCACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTAAGTATCTACATCGTC 726 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 599 TTTTCACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTCACTATCTACATCGTC 658 Query 727 ATCATTCTGGATCTCAAGGGATATGTAGAGATGGGGTGATGTATTATTTAGCTTCTTTCA 786 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 659 ATCATTCTGGATCTCAAGGGATATGTAGGGATGGGGTGTTGTATTATTTAGCTTCTTTCA 718 Query 787 ACGATAAACGATCTCTGATGAGCTTTGATCTGAGCTCTGAAGAATTTAATGTTACTAAGC 846 | |||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||||| Sbjct 719 AGGATAAAAGATCTCTGATGACCTTTGATCTGAGCTCTGAAGACTTTAATGTTGCTAAGC 778 Query 847 TACCTGAGGATTATATATTACAACAGTTTGGTAATATGGTGGACCATAGTGGAAAGATAG 906 ||||||||||||||| |||||||||||||||| || ||||| || ||||||||||||||| Sbjct 779 TACCTGAGGATTATACATTACAACAGTTTGGTTATTTGGTGAACTATAGTGGAAAGATAG 838 Query 907 CTATAGTGAGTCAGGCATACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGTCAGCA 966 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 839 CTATAGTGACTCAGGCATACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGCCAGCA 898 Query 967 AAGAAGAGTGGTCAAAAGTTGCTGCCATAGTTCCTTCTATTACAGATATAGTTGGGAATG 1026 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 899 AAGAAGAGTGGTCAAAAGTTGCTGCCGTAATTCCTTCTATTACAGATATAGTTGGGAATG 958 Query 1027 ATCAAAGAGTCATTTTCAGGGGTATACTTTCTACTGGTGAGATTATACTTTCACTGCTCC 1086 |||||| |||||| ||||| ||||||||| |||||||||||||||||||| ||||||||| Sbjct 959 ATCAAATAGTCATATTCAGTGGTATACTTCCTACTGGTGAGATTATACTTGCACTGCTCC 1018 Query 1087 CAACCCCCAAGCCGCCCTTCTTTTTTCTCTGTTACGATCCCAAGGAAAAAACTGCTAGAA 1146 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1019 CAACCCCCAAGCCGCCCTTCTTTTTTCTCTGTTACGATCCCAAGGAAAAAAATGCTAGAA 1078 Query 1147 AAGTTGTGATTCAAGGAATTGGAGAAGACTATGCTGCTATTAATGTCTTTTTCGATCACG 1206 ||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||| | Sbjct 1079 AAGTTGTGATTGAAGGAATTGGAGAAGACTCTGCTGCGGTCAATGTCTTTTTCGATCATG 1138 Query 1207 TAGAGAGTCATATGGTTCTGTCGAAG 1232 |||||||||||||||||||||| ||| Sbjct 1139 TAGAGAGTCATATGGTTCTGTCCAAG 1164 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46357467072 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5