BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04670.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477731 jgi|Araly1|477731|fgenesh2_kg.3__432__AT3G04670.1 2638 0.0
> Ahg477731 jgi|Araly1|477731|fgenesh2_kg.3__432__AT3G04670.1
Length=1790
Score = 2638 bits (1428), Expect = 0.0
Identities = 1703/1827 (93%), Gaps = 54/1827 (3%)
Strand=Plus/Plus
Query 1 ACAAAGAAACAAACAAGACAAATCTTTCTTTCTCTTTATTTTATCCTAAAATTTCCTATC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ACAAAGAAACAAACAAGACAAATCTTTCTCTCTCTTTATTTTATCCTAAAATTTCCTATC 60
Query 61 TGATTTCTTCCTCTTGAGC-TAAATTTGTTACCTTCTGGGTATTCAAAAAGATCTCAttt 119
||||||||| || |||||| |||| || |||||||| |||||||||||||||||||||||
Sbjct 61 TGATTTCTTGCTATTGAGCTTAAA-TT-TTACCTTCCGGGTATTCAAAAAGATCTCATTT 118
Query 120 tttcttctagctct-aaattt-tcagggagtttctttcttcttcttttGAAGACCCTTTG 177
|||||||||||||| | ||| ||||| | ||||||||||| | |||| ||||||||||
Sbjct 119 TTTCTTCTAGCTCTGTATTTTCTCAGGAAATTTCTTTCTTC-T-TTTT--AGACCCTTTG 174
Query 178 TCATGAGCTAATTTTTATCCTCTGTGTGTTGAGAAAGATCTCATTTTTTAGCTTTAGGAT 237
||||||||||||||||||| || | ||| ||| ||||||||||| ||||||| |||||||
Sbjct 175 TCATGAGCTAATTTTTATCTTCCGGGTGATGAAAAAGATCTCATCTTTTAGC-TTAGGAT 233
Query 238 TGAGGGAGTTTCGA-TTTTTACTTAGCACTTTTCCTTGGAAGTGATTTGGTGGAACTCAT 296
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 234 TGAGGGAGTTTCGATTTTTTACTTTGCACTTTTCCTTGGAAGTGATTTGGTGGAACACAT 293
Query 297 GGTGATTGGTTTCTTCCTAGGGTTATTAGAGATTGAGTTCTGGATTTTTCACGCGCCTTG 356
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 294 GGTGATTGGTTTCTTCCTAGGGTTATTAGAGATTGACTTCTGGATTTTTCACGCGCCTTG 353
Query 357 GATTTGATCTAATGTACTCTCT-TTTTTCATGTC-TTAATCTGGTTTAGATTTTTA-TTT 413
||||||||||||||||| |||| ||||||||||| || |||||||||||||||| | |||
Sbjct 354 GATTTGATCTAATGTACCCTCTCTTTTTCATGTCTTTTATCTGGTTTAGATTTTGATTTT 413
Query 414 TGAGATCTTTTGTTATATAGGTTGCAAGTTCTGT-ATTTTGTTAGGCTTTTTAGTTTCTG 472
|||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 414 TGAGATCTTTTG-T-TATAGGTTGCAAGTTCTGTGTTTTTGTTAGTCTTTTTAGTTTCTG 471
Query 473 TGTTGATTATGATTCTCTTGGTCTAGGAGAGATTTGGGTGTTGTTAACTGTTTGAGTTTG 532
|||||||||||||||||||||| ||||||||||||||||| | || | || |||||||||
Sbjct 472 TGTTGATTATGATTCTCTTGGTTTAGGAGAGATTTGGGTG-T-TT-ATTGATTGAGTTTG 528
Query 533 AGAATTGTGAAATTAGGttttttttttttGGTTCTCTGATCTGAAACTTGGGTAGAAGAA 592
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 529 AGAATTGTGAAATTAGG---TTTATTTTTGGTTCTCTGATCTGAAACTTGGGTAGAAGAA 585
Query 593 AAACATGGAGGAAGTTGAAGCTGCTAACAGATCAGCTATAGAAAGCTGTCATGGAGTGTT 652
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 586 AAACATGGAAGAAGTTGAAGCTGCTAACAGATCAGCTATAGAAAGCTGCCATGGAGTGTT 645
Query 653 AAATCTCTTGTCACAACGAACCAGTGATCCCAAATCCTTAACGGTTGAAACAGGAGAAGT 712
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 646 AAATCTCTTGTCACAACAAACCAGTGATCCCAAATCCTTAATGGTTGAAACAGGAGAAGC 705
Query 713 AGTTTCCAAGTTCAAAAGAGTAGCTTCTCTGTTAACTAGAGGGTTAGGCCATGGAAAGTT 772
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AGTTTCCAAGTTCAAGAGAGTAGCTTCTCTGTTAACTAGAGGGTTAGGCCATGGAAAGTT 765
Query 773 TAGGAGTACCAACAAGTTTAGGTCATCTTTTCCTCAACACATCTTCTTAGAGAGTCCTAT 832
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 766 TAGGAGTATCAACAAGTTTAGGTCATCTTTTCCTCAACACATCTTCTTAGAGAGCCCTAT 825
Query 833 TTGCTGCGGTAATGATCTAAGTGGTGATTACACTCAAGTTCTTGCACCAGAGCCACTTCA 892
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TTGCTGTGGTAATGATTTAAGTGGTGATTACACTCAAGTTCTTGCACCAGAGCCACTTCA 885
Query 893 GATGGTTCCAGCTTCTGCTGTTTATAATGAAATGGAGCCAAAACACCAATTGGGTCATCC 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GATGGTTCCAGCTTCTGCTGTTTATAATGAAATGGAGCCAAAACACCAATTGGGTCATCC 945
Query 953 TTCATTAATGCTTAGTCACAAAATGTGTGTTGACAAGTCGTTTCTGGAGTTAAAGCCACC 1012
| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 946 TCCATTGATGCTTAGTCACAAAATGTGTGTTGACAAGTCGTTTCTGGAGTTGAAGCCACC 1005
Query 1013 TCCTTTTCGTGCTCCTTATCAGTTAATCCACAACCACCAGCAGATAGCTTACTCCAGGAG 1072
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1006 GCCTTTTCGTGCTCCTTATCAGTTAATCCACAACAACCAGCAGATAGCTTACTCTAGGAG 1065
Query 1073 TAATAGCGGTGTAAACCTTAAGTTTGATGGATCTGGTAGTAGTTGCTATACTCCGAGTGT 1132
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1066 CAATAGCGGTGTAAACCTTAAGTTTGATGGGTCTGGTAGTAGTTGCTATACTCCGAGCGT 1125
Query 1133 ATCAAACGGATCAAGATCATTTGTGTCATCTCTTAGCATGGATGCTAGTGTAACAGACTA 1192
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 1126 ATCAAACGGATCAAGATCATTTGTGTCATCTCTTAGTATGGATGCTAGTGTAGCAGATTA 1185
Query 1193 CGATAGGAACTCGTTCCATTTGACCGGATTGTCCCGTGGGTCTGACC--A-A---CAGCA 1246
||||||||||||||||||||||||||||| |||||||||||||||| | | |||||
Sbjct 1186 TGATAGGAACTCGTTCCATTTGACCGGATTATCCCGTGGGTCTGACCATATATCGCAGCA 1245
Query 1247 TACCCGGAAGATGTGCTCTGGTAGTTTGAAATGCGGAAGTCGAAGCAAATGTCACTGTTC 1306
| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1246 TTCCCGGAAGATGTGCTCTGGTAGTTTGAAATGCGGAAGTAGAAGCAAATGTCATTGTTC 1305
Query 1307 CAAGAAAAGGAAACTGAGGGTAAAACGATCAATCAAGGTGCCTGCAATCAGTAACAAGAT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 CAAGAAAAGGAAACTGAGGGTAAAACGATCAATCAAGGTGCCTGCAATCAGTAACAAGAT 1365
Query 1367 TGCAGACATTCCTCCAGATGAGTATTCTTGGAGGAAGTATGGACAGAAACCGATAAAGGG 1426
||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1366 TGCTGATATCCCTCCAGATGAGTATTCATGGAGGAAGTATGGACAGAAACCGATAAAGGG 1425
Query 1427 TTCACCGCATCCACGGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAA 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 TTCACCGCATCCACGGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAA 1485
Query 1487 GCATGTGGAGCGATGTATTGATGAAACTTCAATGTTAATTGTAACTTACGAAGGCGAGCA 1546
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GCATGTGGAGCGATGTATCGATGAAACTTCAATGTTAATTGTAACTTACGAAGGCGAGCA 1545
Query 1547 TAACCATTCAAGAATATTGTCTTCACAATCAGCTCACACTTGATGATACAGAGTCAATAT 1606
||||||||||||||||||||||||||||||||| ||||| |||||| | | ||
Sbjct 1546 TAACCATTCAAGAATATTGTCTTCACAATCAGCGCACACCTGATGA-A-A----CA---- 1595
Query 1607 GTATGTCCTTTTGGCGTCTACTCTTGGATTTGAAGAAAGAATGAATTTGATTCAAGAAAC 1666
| | |||| | ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1596 G-A-GTCC----G---TCTACTCTTGGATTTGAAGAA-GAATGAATTTGATTCTAGAAAC 1645
Query 1667 CGGTCTTTGTAGCTCTGATTTGCAATTGTATATTTCCACTCTGACA-GAAGTTATAAGAG 1725
|||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1646 CGGTCTTTGTAGCTCTAATTTGCAATTGTATATTTCCACTTTGACATGA-GTTATAAGAG 1704
Query 1726 CACTTGTGAACTCGGATTATGTGGCAG-AGGCAGTACCAAGAAACATCAACAATTTGGTT 1784
||||||||||||||| || ||||| | || ||||| |||||||||||||||||||||||
Sbjct 1705 CACTTGTGAACTCGGGTTCTGTGGTGGCAGACAGTAGCAAGAAACATCAACAATTTGGTT 1764
Query 1785 TCAACTGAGCTTTTTCTTCA-ATATAT 1810
||||| |||||||||||| | ||||||
Sbjct 1765 TCAACCGAGCTTTTTCTT-AGATATAT 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5