BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04670.1 Length=1824 Score E Sequences producing significant alignments: (Bits) Value Ahg477731 jgi|Araly1|477731|fgenesh2_kg.3__432__AT3G04670.1 2638 0.0 > Ahg477731 jgi|Araly1|477731|fgenesh2_kg.3__432__AT3G04670.1 Length=1790 Score = 2638 bits (1428), Expect = 0.0 Identities = 1703/1827 (93%), Gaps = 54/1827 (3%) Strand=Plus/Plus Query 1 ACAAAGAAACAAACAAGACAAATCTTTCTTTCTCTTTATTTTATCCTAAAATTTCCTATC 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ACAAAGAAACAAACAAGACAAATCTTTCTCTCTCTTTATTTTATCCTAAAATTTCCTATC 60 Query 61 TGATTTCTTCCTCTTGAGC-TAAATTTGTTACCTTCTGGGTATTCAAAAAGATCTCAttt 119 ||||||||| || |||||| |||| || |||||||| ||||||||||||||||||||||| Sbjct 61 TGATTTCTTGCTATTGAGCTTAAA-TT-TTACCTTCCGGGTATTCAAAAAGATCTCATTT 118 Query 120 tttcttctagctct-aaattt-tcagggagtttctttcttcttcttttGAAGACCCTTTG 177 |||||||||||||| | ||| ||||| | ||||||||||| | |||| |||||||||| Sbjct 119 TTTCTTCTAGCTCTGTATTTTCTCAGGAAATTTCTTTCTTC-T-TTTT--AGACCCTTTG 174 Query 178 TCATGAGCTAATTTTTATCCTCTGTGTGTTGAGAAAGATCTCATTTTTTAGCTTTAGGAT 237 ||||||||||||||||||| || | ||| ||| ||||||||||| ||||||| ||||||| Sbjct 175 TCATGAGCTAATTTTTATCTTCCGGGTGATGAAAAAGATCTCATCTTTTAGC-TTAGGAT 233 Query 238 TGAGGGAGTTTCGA-TTTTTACTTAGCACTTTTCCTTGGAAGTGATTTGGTGGAACTCAT 296 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 234 TGAGGGAGTTTCGATTTTTTACTTTGCACTTTTCCTTGGAAGTGATTTGGTGGAACACAT 293 Query 297 GGTGATTGGTTTCTTCCTAGGGTTATTAGAGATTGAGTTCTGGATTTTTCACGCGCCTTG 356 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 294 GGTGATTGGTTTCTTCCTAGGGTTATTAGAGATTGACTTCTGGATTTTTCACGCGCCTTG 353 Query 357 GATTTGATCTAATGTACTCTCT-TTTTTCATGTC-TTAATCTGGTTTAGATTTTTA-TTT 413 ||||||||||||||||| |||| ||||||||||| || |||||||||||||||| | ||| Sbjct 354 GATTTGATCTAATGTACCCTCTCTTTTTCATGTCTTTTATCTGGTTTAGATTTTGATTTT 413 Query 414 TGAGATCTTTTGTTATATAGGTTGCAAGTTCTGT-ATTTTGTTAGGCTTTTTAGTTTCTG 472 |||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 414 TGAGATCTTTTG-T-TATAGGTTGCAAGTTCTGTGTTTTTGTTAGTCTTTTTAGTTTCTG 471 Query 473 TGTTGATTATGATTCTCTTGGTCTAGGAGAGATTTGGGTGTTGTTAACTGTTTGAGTTTG 532 |||||||||||||||||||||| ||||||||||||||||| | || | || ||||||||| Sbjct 472 TGTTGATTATGATTCTCTTGGTTTAGGAGAGATTTGGGTG-T-TT-ATTGATTGAGTTTG 528 Query 533 AGAATTGTGAAATTAGGttttttttttttGGTTCTCTGATCTGAAACTTGGGTAGAAGAA 592 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 529 AGAATTGTGAAATTAGG---TTTATTTTTGGTTCTCTGATCTGAAACTTGGGTAGAAGAA 585 Query 593 AAACATGGAGGAAGTTGAAGCTGCTAACAGATCAGCTATAGAAAGCTGTCATGGAGTGTT 652 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 586 AAACATGGAAGAAGTTGAAGCTGCTAACAGATCAGCTATAGAAAGCTGCCATGGAGTGTT 645 Query 653 AAATCTCTTGTCACAACGAACCAGTGATCCCAAATCCTTAACGGTTGAAACAGGAGAAGT 712 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 646 AAATCTCTTGTCACAACAAACCAGTGATCCCAAATCCTTAATGGTTGAAACAGGAGAAGC 705 Query 713 AGTTTCCAAGTTCAAAAGAGTAGCTTCTCTGTTAACTAGAGGGTTAGGCCATGGAAAGTT 772 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 AGTTTCCAAGTTCAAGAGAGTAGCTTCTCTGTTAACTAGAGGGTTAGGCCATGGAAAGTT 765 Query 773 TAGGAGTACCAACAAGTTTAGGTCATCTTTTCCTCAACACATCTTCTTAGAGAGTCCTAT 832 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 766 TAGGAGTATCAACAAGTTTAGGTCATCTTTTCCTCAACACATCTTCTTAGAGAGCCCTAT 825 Query 833 TTGCTGCGGTAATGATCTAAGTGGTGATTACACTCAAGTTCTTGCACCAGAGCCACTTCA 892 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 826 TTGCTGTGGTAATGATTTAAGTGGTGATTACACTCAAGTTCTTGCACCAGAGCCACTTCA 885 Query 893 GATGGTTCCAGCTTCTGCTGTTTATAATGAAATGGAGCCAAAACACCAATTGGGTCATCC 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 GATGGTTCCAGCTTCTGCTGTTTATAATGAAATGGAGCCAAAACACCAATTGGGTCATCC 945 Query 953 TTCATTAATGCTTAGTCACAAAATGTGTGTTGACAAGTCGTTTCTGGAGTTAAAGCCACC 1012 | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 946 TCCATTGATGCTTAGTCACAAAATGTGTGTTGACAAGTCGTTTCTGGAGTTGAAGCCACC 1005 Query 1013 TCCTTTTCGTGCTCCTTATCAGTTAATCCACAACCACCAGCAGATAGCTTACTCCAGGAG 1072 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1006 GCCTTTTCGTGCTCCTTATCAGTTAATCCACAACAACCAGCAGATAGCTTACTCTAGGAG 1065 Query 1073 TAATAGCGGTGTAAACCTTAAGTTTGATGGATCTGGTAGTAGTTGCTATACTCCGAGTGT 1132 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1066 CAATAGCGGTGTAAACCTTAAGTTTGATGGGTCTGGTAGTAGTTGCTATACTCCGAGCGT 1125 Query 1133 ATCAAACGGATCAAGATCATTTGTGTCATCTCTTAGCATGGATGCTAGTGTAACAGACTA 1192 |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || Sbjct 1126 ATCAAACGGATCAAGATCATTTGTGTCATCTCTTAGTATGGATGCTAGTGTAGCAGATTA 1185 Query 1193 CGATAGGAACTCGTTCCATTTGACCGGATTGTCCCGTGGGTCTGACC--A-A---CAGCA 1246 ||||||||||||||||||||||||||||| |||||||||||||||| | | ||||| Sbjct 1186 TGATAGGAACTCGTTCCATTTGACCGGATTATCCCGTGGGTCTGACCATATATCGCAGCA 1245 Query 1247 TACCCGGAAGATGTGCTCTGGTAGTTTGAAATGCGGAAGTCGAAGCAAATGTCACTGTTC 1306 | |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1246 TTCCCGGAAGATGTGCTCTGGTAGTTTGAAATGCGGAAGTAGAAGCAAATGTCATTGTTC 1305 Query 1307 CAAGAAAAGGAAACTGAGGGTAAAACGATCAATCAAGGTGCCTGCAATCAGTAACAAGAT 1366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1306 CAAGAAAAGGAAACTGAGGGTAAAACGATCAATCAAGGTGCCTGCAATCAGTAACAAGAT 1365 Query 1367 TGCAGACATTCCTCCAGATGAGTATTCTTGGAGGAAGTATGGACAGAAACCGATAAAGGG 1426 ||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1366 TGCTGATATCCCTCCAGATGAGTATTCATGGAGGAAGTATGGACAGAAACCGATAAAGGG 1425 Query 1427 TTCACCGCATCCACGGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAA 1486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1426 TTCACCGCATCCACGGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAA 1485 Query 1487 GCATGTGGAGCGATGTATTGATGAAACTTCAATGTTAATTGTAACTTACGAAGGCGAGCA 1546 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1486 GCATGTGGAGCGATGTATCGATGAAACTTCAATGTTAATTGTAACTTACGAAGGCGAGCA 1545 Query 1547 TAACCATTCAAGAATATTGTCTTCACAATCAGCTCACACTTGATGATACAGAGTCAATAT 1606 ||||||||||||||||||||||||||||||||| ||||| |||||| | | || Sbjct 1546 TAACCATTCAAGAATATTGTCTTCACAATCAGCGCACACCTGATGA-A-A----CA---- 1595 Query 1607 GTATGTCCTTTTGGCGTCTACTCTTGGATTTGAAGAAAGAATGAATTTGATTCAAGAAAC 1666 | | |||| | ||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 1596 G-A-GTCC----G---TCTACTCTTGGATTTGAAGAA-GAATGAATTTGATTCTAGAAAC 1645 Query 1667 CGGTCTTTGTAGCTCTGATTTGCAATTGTATATTTCCACTCTGACA-GAAGTTATAAGAG 1725 |||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| Sbjct 1646 CGGTCTTTGTAGCTCTAATTTGCAATTGTATATTTCCACTTTGACATGA-GTTATAAGAG 1704 Query 1726 CACTTGTGAACTCGGATTATGTGGCAG-AGGCAGTACCAAGAAACATCAACAATTTGGTT 1784 ||||||||||||||| || ||||| | || ||||| ||||||||||||||||||||||| Sbjct 1705 CACTTGTGAACTCGGGTTCTGTGGTGGCAGACAGTAGCAAGAAACATCAACAATTTGGTT 1764 Query 1785 TCAACTGAGCTTTTTCTTCA-ATATAT 1810 ||||| |||||||||||| | |||||| Sbjct 1765 TCAACCGAGCTTTTTCTT-AGATATAT 1790 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68486260510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5