BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04680.1
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928022 jgi|Araly1|928022|scaffold_300479.1 2303 0.0
> Ahg928022 jgi|Araly1|928022|scaffold_300479.1
Length=1372
Score = 2303 bits (1247), Expect = 0.0
Identities = 1333/1375 (97%), Gaps = 3/1375 (0%)
Strand=Plus/Plus
Query 247 TCTTACTCTGAGTGAAAGCAATGGCGTACGGTGGTCCGTCCATGAATCCACCGGCTTTGA 306
|||||| |||||||||||||||||| ||||||||| | | |||||||||||||||||||
Sbjct 1 TCTTACCCTGAGTGAAAGCAATGGCTTACGGTGGT-C--CAATGAATCCACCGGCTTTGA 57
Query 307 GTGGAGCTGTTCCCGGGTCTGCTAATCTGAAGCAAGTGAAATTGGAGAGAGAAAGCGAGC 366
|||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GTGGCCCAGTTTCCGGGTCTGCTAATCTGAAGCAAGTGAAATTGGAGAGAGAAAGCGAGC 117
Query 367 TCAGGATCGAAGTCTCTGAAGAGCCTCTCAGACTCCGTGTGGTTAACGGGACCGCTGAGA 426
|||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||
Sbjct 118 TCAGGATCGAAGTCTCTGAAGAGCCTCTCAGACTCCGTGTCGTGAACGGAACGGCTGAGA 177
Query 427 TTTTTGGCTCTGAACTGCCTCCTGAAATATGGCGTACCTTCCCTCCTCGCATGAAATTTG 486
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 TTTTTGGCTCTGAACTGCCTCCTGAAATATGGCGTACGTTCCCTCCTCGCATGAAATTTG 237
Query 487 CGGTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CGGTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATA 297
Query 547 CAGCAGATGAGACGCCGATGGTCAGCTACATTAATGTGCATGCCATACTAGATGCAAGGA 606
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGGCAGATGAGACACCGATGGTCAGCTACATTAATGTGCATGCCATACTAGATGCAAGGA 357
Query 607 GACGTTTTGCCAAAGCTTCCACATCTAATGACCCAGAATCTTCTCAGGGACCTCGGGTTA 666
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 358 GACGTTTTGCCAAAGCTTCCACATCCAATGATCCAGAATCTTCTCAGGGACCTCGGGTTA 417
Query 667 TTGTAGTAGGGCCTACGGATTCCGGGAAGAGCACATTGACAAAGATGCTCCTTAGTTGGG 726
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 418 TTGTAGTAGGGCCTACGGATTCCGGGAAGAGCACATTGACAAAGATGCTTCTTAGTTGGG 477
Query 727 CAGCTAAACAGGGATGGAGACCTACATTTGTAGACCTTGATGTTGGCCAAGGCTCGATTA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CAGCTAAACAGGGATGGAGACCTACATTTGTAGACCTTGATGTTGGCCAAGGCTCGATTA 537
Query 787 CAATACCAGGATCTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGT 846
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CAATACCAGGATGTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGT 597
Query 847 TTCCTCTTGATATGGCCCTTGTTTACTACTACGGCCACGCATCACCAAATATGAACGTTG 906
|||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||
Sbjct 598 TTCCTCTTGATATGGCCCTTGTGTACTACTGCGGCCATGCATCACCAAATATCAACGTTG 657
Query 907 AACTGTACAAAGCTCTGGTGAAAGAGCTTGCTCAAGTTCTGGAGAAACAGTTTGTCGGAA 966
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 658 AACTGTACAAAGCTCTGGTGAAAGAGCTGGCTCAAGTTCTGGAGAGACAGTTTGTCGGAA 717
Query 967 ACCCTGAATCGCGAGCTGCTGGAATGGTGATCAACACAATGGGATGGATCGAGGGGATTG 1026
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 ACCCTGAATCTCGAGCTGCTGGAATGGTGATCAACACAATGGGATGGATCGAGGGTATTG 777
Query 1027 GTTATGAGCTGCTTCTCCACGCAATAGACACATTCAATGCCTCGGTTGTACTTGTATTGG 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTTATGAGCTGCTTCTCCACGCAATAGACACATTCAATGCCTCGGTTGTACTTGTATTGG 837
Query 1087 GTCAGGAAAAACTCTTCAGCAGGCTTAAAGATGTGCTGAGAAGTAAGAGTAATGTCGACG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTCAGGAAAAACTCTTCAGCAGGCTTAAAGATGTGCTGAGAAGTAAGAGTAATGTCGACG 897
Query 1147 TCGTGAAGCTTCACAAGTCTGGTGGAGTTGTAGCCAGGGTCAAAGAGGTCCGTAAAAGAT 1206
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCGTGAAACTTCACAAGTCTGGTGGAGTTGTAGCCAGGGTCAAAGAGGTCCGTAAAAGAT 957
Query 1207 CAAGGAACTTTAAGATTCAGGAATATTTTTACGGTTTATCGAAAGAACTCTCTCCGTATG 1266
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 CGAGGAATTTTAAGATTCAGGAATATTTTTACGGTTTATCGAAAGAACTATCTCCGTATG 1017
Query 1267 CCAATACATCGAGTTTCAGTGATCTGCAAGTGTTCCGAATTGGTGGTGGACCACAAGCGC 1326
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CCAATACATCAAGTTTCAGTGATCTGCAAGTGTTCCGAATTGGTGGTGGACCACAAGCGC 1077
Query 1327 CAAAATCGGCTCTTCCAGCCGGGTCTACCTCGGTTTCAAATCCGTTGCGGGTGACGCCTG 1386
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1078 CAAAGTCAGCTCTTCCAGCCGGGTCTACCTCGGTTTCAAATCCATTGCGGGTGACGCCTG 1137
Query 1387 TAAATATCGATGATCGGGATCTGCTGCATTCTGTTCTTGCTGTCTCATACGCAGAAGAAC 1446
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1138 TAAATATCGATGATCGGGATCTGCTGCATTCTGTTCTCGCTGTCTCGTACGCAGAAGAAC 1197
Query 1447 CAGACCAGATCATCTCAAGCAATGTTTCTGGGTTTGTGTATGTGACGGAAGTTAATGTGC 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAGACCAGATCATCTCAAGCAATGTTTCTGGGTTTGTGTATGTGACGGAAGTTAATGTGC 1257
Query 1507 AGAAGAAGAAGATAACGTATTTAGCACCATCGCCTGGGACATTACCTAGCAAGTTGTTGG 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGAAGAAGAAGATAACGTATTTAGCACCATCGCCTGGGACATTACCTAGCAAGTTGTTGG 1317
Query 1567 TCGCTGGATCATTGGCATGGCTTGAGTCAGTATGACTTACTTAGAGAAGAGAGGA 1621
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct 1318 TCGCTGGATCATTGACATGGCTTGAGTCAGTATGATTTATTTAGAGAAGAGAGGA 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67610184875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5