BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04690.1
Length=2755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928023 jgi|Araly1|928023|scaffold_300480.1 4030 0.0
> Ahg928023 jgi|Araly1|928023|scaffold_300480.1
Length=2593
Score = 4030 bits (2182), Expect = 0.0
Identities = 2447/2578 (95%), Gaps = 6/2578 (0%)
Strand=Plus/Plus
Query 51 TACCCGTTGATGTGTCAGCCATGAGCGGGAAAACTCGGATTCTCTTTTTCCTCACATGTC 110
|||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 1 TACCCGTTGATGTGTCAGCCATGAACAGGAAAACTCGGATTCTCTTTTTCCTCTCATGTC 60
Query 111 TCTCC-TTTCTATTGGTTTTTCCAACTAGATCTAACGGACAAGATTTAGCTCTGAGCTGC 169
||||| ||| | |||| |||||||||||||||||| || |||||||| ||||||||||||
Sbjct 61 TCTCCATTT-TGTTGGCTTTTCCAACTAGATCTAATGGCCAAGATTTTGCTCTGAGCTGC 119
Query 170 GGGACATCAGAAGCTTCTGCTGACCAAGATAAGAAAAAATGGGAACCAGATACAAAGTTT 229
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGGGCATCGGAAGCTTCTGCTGACCAAGATAAGAAAAAATGGGAACCAGATACAAAGTTT 179
Query 230 TTAAAGACTGGAAACTCAATTCACGCAACGGCTACATATCAAGACCCTTCACTTCTCTCA 289
|||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 TTAAAGGCGGGAAACTCAATTCATGCAACGGCTACATATCAAGACCCTTCACTTCTCTCA 239
Query 290 ACAGTTCCTTATATGACAGCCAGAATCTTTACAGCTCCAGCAACTTATGAAATCCCGATT 349
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACAATTCCTTATATGACAGCAAGAATCTTTACAGCTCCAGCAACTTATGAAATCCCGATT 299
Query 350 AAAGGAGATAAAAGACATTTGCTTCGGTTATATTTCTACCCATCAACATACACCGGTCTC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAAGGAGATAAAAGACATTTGCTTCGGTTATATTTCTACCCATCAACATACACCGGTCTC 359
Query 410 AACATTTCCAACTCGTATTTCACTGTGGAAGCTAACGATGTTACCTTACTGAGCAATTTC 469
|||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 360 AACATTTCCAACTCGTATTTCAATGTGCAAGCTAACGATGTTACCCTACTGAGCAATTTC 419
Query 470 AGCGCCGCGATTACGTGTCAAGCTTTGACTCAAGCTTATCTGGTTAAAGAATACTCTCTT 529
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 420 AGCGCCGCGATTACGTGTCAAGCTTTGACACAAGCTTATTTGGTTAAAGAATACTCTCTT 479
Query 530 GCACCCA-CTGACAAAGATGTTTTGAGCATCAAGTTTACCCCTTCAGATAAATACCGAGA 588
||||||| | || ||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 480 GCACCCATC-GAAAAAGATGTTTTGAGCATCACGTTTACCCCATCAGATAAATACCGAGA 538
Query 589 CGCATTTGCCTTTATAAACGGTATCGAGGTGATTCAGATGCCGGAATTGTTTGACACGGC 648
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 539 CACATTTGCCTTTATAAACGGTATTGAGGTGATTCAGATGCCGGAATTGTTTGATACGGC 598
Query 649 GGCTCTTGTTGGTTTCACAGACCAAACAATGGATGCCAAGACTGCGAATCTTCAGTCAAT 708
||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||||
Sbjct 599 GGCTCTTGTTGGTTTCACAGATCAAACAGTGGATGCCAAGACCGCGAATTTTCAGTCAAT 658
Query 709 GTTTAGACTTAATGTTGGTGGTCAGGACATCCCTGGAAGCCAAGACTCCGGTGGGTTGAC 768
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 659 GTTTAGGCTTAATGTTGGTGGTCAGGACATTCCTGGAAGCCAAGACTCTGGTGGGTTGAC 718
Query 769 AAGAACTTGGTATAATGATGCACCTTACATCTTTAGTGCGGGTCTTGGTGTTACACTTCA 828
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAGAACTTGGTACAATGATGCACCTTACATCTTTAGTGCGGGTCTTGGTGTTACACTTCA 778
Query 829 AGCAAGCAACAATTTTAGGATCAACTACCAGAACATGCCGGTGTCTATAGCTCCAGCCGA 888
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 779 AGCAAGCAACAATTTTAGGATCAACTACCAGAAAATGCCGGTGTCTATAGCTCCAGCCGA 838
Query 889 TATATACAAAACCGCAAGATCTCAAGGCCCAAACGGAGATATCAACCTCAAATCCAATCT 948
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 TGTATACAAAACCGCAAGATCTCAAGGCCCGAACGGAGATATCAACCTCAAATCCAATCT 898
Query 949 TACATGGATGTTCCAAATCGATAAGAACTTCACCTACATTTTGAGACTCCATTTCTGCGA 1008
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 TACATGGATGTTCCAAATCGATAAGAACTTCACTTACATTTTGAGACTCCATTTCTGCGA 958
Query 1009 ATTCCAGCTTTCCAAGATCAACCAGAAGGTTTTCAACATTTACATCAATAACAGAACAGC 1068
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 959 ATTCCAGCTTTCAAAGATCAACCAGAAGGTTTTCAATATCTACATCAATAACAGAACAGC 1018
Query 1069 GCAGGCAGATACTACTCCTGCAGATATAATAGGGTGGACAGGAGAGAAAGGAATCCCGAT 1128
||| |||||||| | ||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 1019 GCAAGCAGATACCAATCCTGCAGATATACTCGGGTGGACAGGAGAGAAAGGAATCCCAAC 1078
Query 1129 GTACAAAGACTACGCGATATATGTTGATGCCAACAACGGAGGCGAAGAGATTACACTTCA 1188
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1079 ATACAAAGACTACGCGATATATGTTGATGCTAACAATGGAGGCGAAGAGATTACACTTCA 1138
Query 1189 GATGACTCCATCAACTTTTGGTCAACCGGAATATTATGATTCATCTCTTAACGGGTTAGA 1248
||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| ||||
Sbjct 1139 GATGACTCCATCAGTTTTTGGTGAACCAGAATATTATGATTCGTCTCTTAACGGGCTAGA 1198
Query 1249 GATTTTCAAGATGGACACCAT-GAAAAATCTTGCGGGTCCAAACCCCGAGCCATCGCCTA 1307
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GATTTTCAAGATGGACAC-ATTGAAAAATCTTGCGGGTCCAAACCCCGAGCCATCGCCTA 1257
Query 1308 TGCAAGCTGAGGAAGAGGTTAAAAAAGAATTCAAGAACGAAAAGAGACACGCTTTCATCA 1367
|||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1258 TGCAAGCTGAGGGAGAGGTTAAAAAGGAATTCAAGAACGAAAAGAGAAACGCTTTCATCA 1317
Query 1368 TTGGTTCGGCCGGAGGAGTTTTAGCGGTTTTAATCGGTGCCTTGTGTTTCACGGCCTACA 1427
|||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||| |
Sbjct 1318 TTGGCTCGGCCGGAGGAGTTTTAGCGGTTTTAGTCTGTGCCTTGTGTTTTACGGCCTATA 1377
Query 1428 AGAAGAAACAAGGATATCAAGGAGGCGACTCTCACACATCAAGTTGGCTTCCTATATATG 1487
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGAAGAAACATGGATACCAAGGAGGCGACTCTCACACATCAAGTTGGCTTCCTATATATG 1437
Query 1488 GAAACTCTACCACATCAGGAACCAAATCAACCATCTCAGGGAAGAGCAACAATGGAAGTC 1547
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1438 GAAACTCTACCACATCAGGAACTAAATCAACCATCTCAGGGAAGAGCAACAATGGAAGTC 1497
Query 1548 ACCTATCCAATCTCGCAGCAGGTTTATGCCGTAGATTCTCTTTACCAGAAATCAAACACG 1607
||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1498 ACCTATCCAATCTTGCAGCAGGTTTATGTCGTAGATTCTCTTTGCCTGAAATCAAACACG 1557
Query 1608 GAACACAAAACTTCGATGATTCCAACGTCATTGGAGTTGGAGGGTTTGGTAAAGTCTACA 1667
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1558 GGACTCAAAACTTCGATGATTCCAACGTCATTGGAGTTGGAGGGTTTGGGAAAGTCTACA 1617
Query 1668 AAGGAGTTATAGACGGCACAACTAAAGTAGCGGTaaaaaaaTCAAACCCAAATTCAGAAC 1727
|||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||
Sbjct 1618 AAGGAGTTATAGACGGCACAACCAAAGTGGCGGTCAAACGATCAAACCCAAATTCAGAAC 1677
Query 1728 AAGGACTCAACGAATTCGAGACAGAAATCGAACTCCTCTCAAGACTAAGACACAAACACT 1787
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1678 AAGGACTCAACGAATTCGAGACAGAAATCGAACTTCTCTCAAGATTAAGACACAAACACT 1737
Query 1788 TAGTCTCCTTGATAGGATACTGCGACGAGGGAGGAGAAATGTGTCTCGTATACGATTACA 1847
| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 1738 TGGTCTCCTTGATAGGATACTGCGACGACGGAGGCGAAATGTGTCTCATATACGATTACA 1797
Query 1848 TGGCATTTGGAACACTCCGTGAGCATCTATACAACACAAAGAAACCACAATTAACTTGGA 1907
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1798 TGGCTTTTGGAACACTCCGTGAACATCTATACAACACAAAGAAACCACAATTAACTTGGA 1857
Query 1908 AACGAAGGCTAGAGATAGCTATTGGAGCAGCAAGAGGATTACATTACCTTCACACAGGAG 1967
|||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1858 AACGAAGGCTAGAGATCGCTATTGGAGCTGCAAGAGGACTACATTACCTTCACACAGGAG 1917
Query 1968 CAAAGTACACGATTATACACAGAGACGTTAAAACAACTAACATCCTCGTAGATGAGAACT 2027
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1918 CAAAGTACACGATTATACACAGAGACGTAAAAACAACTAACATCCTTGTAGATGAGAACT 1977
Query 2028 GGGTAGCCAAAGTTTCAGACTTTGGGTTATCCAAAACTGGACCTAACATGAATGGAGGCC 2087
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1978 GGGTAGCGAAAGTTTCAGACTTTGGGTTATCCAAAACTGGACCAAACATGAATGGAGGCC 2037
Query 2088 ATGTAACAACCGTCGTCAAAGGAAGCTTCGGTTATTTAGATCCTGAATACTTCAGAAGAC 2147
||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 2038 ATGTAACAACCGTTGTCAAAGGAAGTTTCGGATATTTAGATCCAGAATACTTTAGAAGAC 2097
Query 2148 AACAACTGACTGAGAAATCAGACGTTTACTCATTCGGAGTTGTTCTGTTCGAAATCTTAT 2207
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 2098 AACAACTGACTGAGAAATCAGATGTTTACTCATTCGGAGTTGTTCTATTCGAAATCCTAT 2157
Query 2208 GCGCAAGACCAGCGTTAAACCCGAGTTTGCCTAAGGAACAAGTGAGTCTCGGAGACTGGG 2267
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2158 GCGCAAGACCAGCGTTAAACCCAAGTTTGCCTAAGGAACAAGTGAGTCTCGGAGATTGGG 2217
Query 2268 CAATGAATTGCAAACGAAAAGGGAATTTAGAGGATATAATCGATCCGAATCTGAAAGGGA 2327
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2218 CAATGAATTGCAAACGAAAAGGGAATTTAGAGGATATAATCGATCCAAATCTGAAAGGGA 2277
Query 2328 AGATCAATGCAGAGTGTTTGAAGAAATTTGCAGACACGGCGGAGAAGTGTCTTAACGATA 2387
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 AGATCAATTCAGAGTGTTTGAAGAAATTTGCAGACACGGCGGAGAAGTGTCTTAACGATA 2337
Query 2388 GTGGATTAGAACGGCCGACAATGGGAGATGTTTTGTGGAATCTCGAATTCGCACTTCAGC 2447
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2338 GTGGATTAGAACGGCCGACAATGGGAGATGTTTTGTGGAATCTTGAATTCGCGCTTCAGC 2397
Query 2448 TTCAAGAGACTGCTGACGGGACTCGTCATCGGACTCCGAATAATGGAGGAAGCTCTGAGG 2507
||||||| |||||||| |||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 2398 TTCAAGAAACTGCTGATGGGACTCGTCATCGGACTCCTAATAGTGGAGGAAGCTCCGAGG 2457
Query 2508 ATCTCGGTAGAGGAGGCATGGCGGTTAACGTCGCCGGTAGAGATGATGTGAGTGATCTCT 2567
|||| || ||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 2458 ATCTTGGCGGAGGAGGCATGGCGGTTAACGTCGCCGGTAGAGATGACGTCAGTGATCTAT 2517
Query 2568 CCTCAGAGGACAATACCGAAATATTCTCTCAGATTGTAAATCCCAAAGGACGATAAGG 2625
|||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2518 CCTCGGAGGATAACACCGAGATATTCTCTCAAATTGTAAATCCCAAAGGACGATAAGG 2575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103948278605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5