BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04700.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477736 jgi|Araly1|477736|fgenesh2_kg.3__437__AT3G04700.1 1426 0.0
> Ahg477736 jgi|Araly1|477736|fgenesh2_kg.3__437__AT3G04700.1
Length=1049
Score = 1426 bits (772), Expect = 0.0
Identities = 977/1068 (91%), Gaps = 46/1068 (4%)
Strand=Plus/Plus
Query 1 GGTTGGGAAAAATCCAACTAGAGAAGAGCATAAAAGTAGACATCTGATCAACCCGACCCA 60
||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 1 GGTTGGGAAAAATCCAACTAGAGAAGAGCAT-AAAGCAGACATCTGATCAGCCCGACCCA 59
Query 61 TAATAACCtttttttGTTGGCCGCGTAATATGTTCGAGCGCGGCCATCACACTAAGAACA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 TAATAACC--TTTTTGTTGGCCGCGTAATATGTTCGAGCGCGGCCATCACACAAAGAACA 117
Query 121 TTCAT---aaaaaaaaaTCCACAGGATTCAAAGCCCTTAAGCTTTGATCATAGTCTCTTA 177
| ||| |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 118 TACATAAAAAAAAAAAATCCACAGGATTCAAAGCCCTT-AGCTTTGAAAATAGTCTCTTA 176
Query 178 AAGAGGTAGTAAAACCATAAACTAGAGCCCCAATTTGCATTCACAAGCCA---C--C-TA 231
|||||||| |||| ||||||| ||||||||||||||||||| || ||| | | ||
Sbjct 177 AAGAGGTAATAAATCCATAAAGAAGAGCCCCAATTTGCATTCGTAATCCACCTCTTCATA 236
Query 232 ACACATTAGCTTCTGGTCATTTCTGCTTTATATACACATCAAGT-------A--AAAAAT 282
| |||||||||| |||||| |||||||||||||||||||||||| | ||||||
Sbjct 237 ATACATTAGCTTTTGGTCA-TTCTGCTTTATATACACATCAAGTAAAAAAAATCAAAAAT 295
Query 283 GGTGAGAAGAAGAGAAGGTCTTACATTGCCAATCATAAAACCGGCGCTTCCCGAGGTCAG 342
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 296 GGTGAGAAGAAGAGAAGGTCTTACATTGCCAATCATATCACCGGCGCTTCCCGAGGTCAG 355
Query 343 ATCAGCAGCGACAACGCCGGTGGCCTCACAGAAACCAAAACATCGTTTATCGAAACAACT 402
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 356 AACAGCAGCGACAACGCCGGTGGCCTCACAGAAACCAAAACATCGATTATCAAAACAACT 415
Query 403 ATCTATGTGTGAAACACCAAGAGACGTTGCTTGGGAAAGAAGAAGGCGTCAGATGATAAT 462
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 416 TTCTATGTGTGAAACACCAAGAGACGTTGCTTGGGAAAGAAGAAGACGTCAGATGATAAT 475
Query 463 GATTCAAGAAAAGAAGCTGCTTCATAAGGGCGCTTCAGACAATCTTTGTATACAGGCGAA 522
||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 476 GATTCAAGAAAAGAAGCTGCTTCATAAAGGCGCTTCAGACAATCTTTGTGTACAAGCGAA 535
Query 523 TCTAACGGATGAAGATTTAAACGAGCTAAAAGGATCGATTGAGCTAGGTTTCGGTTTCAA 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCTAACGGATGAAGATTTAAACGAGCTAAAAGGATCGATTGAGCTAGGTTTCGGTTTCAA 595
Query 583 TGAAGAAGCAGGACAAAAGCTTTGTAATACATTACCAGCTCTTGATCTTTACTTTGCAGT 642
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 596 TGAAGAAGCAGGACAAAAGCTATGCAATACATTACCAGCTCTTGATCTTTACTTTGCAGT 655
Query 643 GAATCGTCAGCTCTCGCCTCTTCCTTCACCTAGCAGCAGCCGTAGCAGCAGTGCATCTGC 702
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAATCGTCAGCTCTCGCCTCTCCCTTCACCTAGCAGCAGCCGTAGCAGCAGTGCATCTGC 715
Query 703 GTCAACTTTCTCATACAGTATACCTTGTAGTCCAAAGAAAACTGATTCAGATTCTGTT-A 761
||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 716 ATCAGCTTTCTCATACAGTATACCTTGTAGTCCAAAAAAAACTGATTCAGATTCT-TTGA 774
Query 762 AAATCTTATGCCCAGGGGACGATCCTCAACAAATGAAGCAGAGGTTGAGACATTGGGCAC 821
||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
Sbjct 775 AAATCTTATGCCCAGGGGATGATCCTCAACAAATGAAGCAAAGATTGAGACATTGGGCTC 834
Query 822 AAGCAGTTGCATGTTCTGTTATGCAGTCTTATTGAAGATTATAAGCACTCAGATTTTCTT 881
||||||||||||||||||||||||||||||||||||| | | | | | | |
Sbjct 835 AAGCAGTTGCATGTTCTGTTATGCAGTCTTATTGAAGG--A---G---T--G-TATA-TG 882
Query 882 TTGAGAGATAGGAAGAAGCGAATCTTTTACAATTAGGATTCgaaagaaacaaaaaacaac 941
| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||
Sbjct 883 T-GAGAGATAGGAAGAAACGAATCTTTTATAATTAGGATTCGGAAGAAACAAAAAAAAAA 941
Query 942 tagaaaattttggagaaaaagagatgaaaaTTGTGGCTCTGTATATA-A--CTCACAAGA 998
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 942 TAGAAAATTTTGGAGAAAAAGAGATGAAAATTGTGGCTCTGTATATATATACTCACAAGA 1001
Query 999 TGAGAGAAAGAAAAAGAAAAA-----CACCTCTTGTTCATAAGCTGTA 1041
||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1002 TGAGAGAAAGAGAAAGAAAAAAAAAACACCTCTTGTTCATAAGCTGTA 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5