BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04715.1 Length=909 Score E Sequences producing significant alignments: (Bits) Value Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1 1168 0.0 > Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1 Length=779 Score = 1168 bits (632), Expect = 0.0 Identities = 732/781 (94%), Gaps = 4/781 (1%) Strand=Plus/Plus Query 118 AGTCGTCTTCGTTCAATCACATAAAGATTCTCGTGAAAGAGCTTAGGATCATGCTTTGTT 177 |||| ||||||||||| ||| | |||| ||||| |||||||||||| ||||||||||||| Sbjct 1 AGTCATCTTCGTTCAACCACTTGAAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTT 60 Query 178 TCCACAATCATCCTCGCATCGTCCAAGCCTCAAGCCCTGTTCTTCACTTAGGGATCCAAC 237 ||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 61 TCCGCAATCATCCTCGCATCGTCCAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAAC 120 Query 238 CCGAAGAATGTTACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCT 297 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCGAAGGATGTCACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCT 180 Query 298 CCCAGTTTCGTGGGAAACCAATGCCTGAGAATATTATCAAAGGTGCCGCTCTTATGATCA 357 || ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 181 CCAAGTTTCGTGGGAAACCAATGCCTGAGAATATGATCAAACGTGCCGCTCTTATGATCA 240 Query 358 TACAAGGACTCGACGCTCTTCACTCACATGGTTACGTTCACTGCGATCTCAAGCCAGCCA 417 |||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||| Sbjct 241 TACAAGGACTTGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCA 300 Query 418 ACGTCCTCGTCTTCCCTTCCACCACTTTTGGAGAGCCATGGGATCTTAAGCTTGCTGATT 477 |||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||| Sbjct 301 ACGTCCTCGTCTTCCCTTCCACAACCTTCGGAGAGCCATGGGATCTCAAGCTTGCTGATT 360 Query 478 TCGGTTCATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACGCTGCAGT 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 361 TCGGTTCATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACGGAGCAGT 420 Query 538 ACATGCCACCATAATC-TCTTGGACATGATGGAGTGATGGGACCGGCCGTTGATATATGG 596 ||||||| ||| |||| | |||||| ||||||||||||||||||||| |||||||||||| Sbjct 421 ACATGCCGCCAGAATCGT-TTGGACCTGATGGAGTGATGGGACCGGCAGTTGATATATGG 479 Query 597 TCTCTAGGGTGTGTGGTTATTCAGATGTTTGGAGGTTGTCCAGTGATGACCAGAGACTGT 656 |||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||| Sbjct 480 TCTCTAGGGTGTATGGTTATTCAGATGTTTGGAGGATGTCCAGAGATGATGGGAGACTGT 539 Query 657 TACATGTGGGGGCTTCCCAAACTTATATCTCCGGTGGCCAACGACTTCTTGATGCGGTGC 716 ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 540 TACATGTGGAGACTTCCCAAACTTATATCTCCAGTGGCCAACGACTTCTTGATGCGGTGC 599 Query 717 TTGGCGTTGCAGCCGTCACGTAGGGCCACCGCAGCCCAGCTGTTGAGCCATCCTTTTGTT 776 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 600 TTGGCGTTGCAGCCGTCACGTAGGGCCACCGCGGCCGAGCTGTTGAGCCATCCTTTTGTT 659 Query 777 GCGGAAAGAGTCAGTGTTCCATTGCCAGAGATGATTCCGTGTCATTCTTAT-TTAAGGTT 835 ||||||||||||||||||||||||||||||||| |||| |||||||||| | |||||||| Sbjct 660 GCGGAAAGAGTCAGTGTTCCATTGCCAGAGATGCTTCCATGTCATTCTT-TCTTAAGGTT 718 Query 836 TCCTTCCGCCATAATTGACAACGTGGTGGAACAAGGAGGAATGATGCTTTGAAGACCTTA 895 ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| Sbjct 719 TCCTTCCGCCATAATTGACAAAGTGATGGAACAAGGAGGAATGATGGTTTGAAGACCTTA 778 Query 896 A 896 | Sbjct 779 A 779 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33700658628 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5