BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04715.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1 1168 0.0
> Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1
Length=779
Score = 1168 bits (632), Expect = 0.0
Identities = 732/781 (94%), Gaps = 4/781 (1%)
Strand=Plus/Plus
Query 118 AGTCGTCTTCGTTCAATCACATAAAGATTCTCGTGAAAGAGCTTAGGATCATGCTTTGTT 177
|||| ||||||||||| ||| | |||| ||||| |||||||||||| |||||||||||||
Sbjct 1 AGTCATCTTCGTTCAACCACTTGAAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTT 60
Query 178 TCCACAATCATCCTCGCATCGTCCAAGCCTCAAGCCCTGTTCTTCACTTAGGGATCCAAC 237
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 61 TCCGCAATCATCCTCGCATCGTCCAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAAC 120
Query 238 CCGAAGAATGTTACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCT 297
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGAAGGATGTCACATCTATATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCT 180
Query 298 CCCAGTTTCGTGGGAAACCAATGCCTGAGAATATTATCAAAGGTGCCGCTCTTATGATCA 357
|| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 181 CCAAGTTTCGTGGGAAACCAATGCCTGAGAATATGATCAAACGTGCCGCTCTTATGATCA 240
Query 358 TACAAGGACTCGACGCTCTTCACTCACATGGTTACGTTCACTGCGATCTCAAGCCAGCCA 417
|||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 241 TACAAGGACTTGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCA 300
Query 418 ACGTCCTCGTCTTCCCTTCCACCACTTTTGGAGAGCCATGGGATCTTAAGCTTGCTGATT 477
|||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 301 ACGTCCTCGTCTTCCCTTCCACAACCTTCGGAGAGCCATGGGATCTCAAGCTTGCTGATT 360
Query 478 TCGGTTCATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACGCTGCAGT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 TCGGTTCATCTAAAGAGCCTTCTACGGATTCTAGGTCGTTATTTCCTGGTACGGAGCAGT 420
Query 538 ACATGCCACCATAATC-TCTTGGACATGATGGAGTGATGGGACCGGCCGTTGATATATGG 596
||||||| ||| |||| | |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 421 ACATGCCGCCAGAATCGT-TTGGACCTGATGGAGTGATGGGACCGGCAGTTGATATATGG 479
Query 597 TCTCTAGGGTGTGTGGTTATTCAGATGTTTGGAGGTTGTCCAGTGATGACCAGAGACTGT 656
|||||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 480 TCTCTAGGGTGTATGGTTATTCAGATGTTTGGAGGATGTCCAGAGATGATGGGAGACTGT 539
Query 657 TACATGTGGGGGCTTCCCAAACTTATATCTCCGGTGGCCAACGACTTCTTGATGCGGTGC 716
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 TACATGTGGAGACTTCCCAAACTTATATCTCCAGTGGCCAACGACTTCTTGATGCGGTGC 599
Query 717 TTGGCGTTGCAGCCGTCACGTAGGGCCACCGCAGCCCAGCTGTTGAGCCATCCTTTTGTT 776
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 600 TTGGCGTTGCAGCCGTCACGTAGGGCCACCGCGGCCGAGCTGTTGAGCCATCCTTTTGTT 659
Query 777 GCGGAAAGAGTCAGTGTTCCATTGCCAGAGATGATTCCGTGTCATTCTTAT-TTAAGGTT 835
||||||||||||||||||||||||||||||||| |||| |||||||||| | ||||||||
Sbjct 660 GCGGAAAGAGTCAGTGTTCCATTGCCAGAGATGCTTCCATGTCATTCTT-TCTTAAGGTT 718
Query 836 TCCTTCCGCCATAATTGACAACGTGGTGGAACAAGGAGGAATGATGCTTTGAAGACCTTA 895
||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 719 TCCTTCCGCCATAATTGACAAAGTGATGGAACAAGGAGGAATGATGGTTTGAAGACCTTA 778
Query 896 A 896
|
Sbjct 779 A 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5