BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04717.1
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340627 jgi|Araly1|340627|fgenesh1_pg.C_scaffold_3000390 241 2e-63
> Ahg340627 jgi|Araly1|340627|fgenesh1_pg.C_scaffold_3000390
Length=426
Score = 241 bits (130), Expect = 2e-63
Identities = 152/163 (93%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 79 GTGACGAATACTGCGACCGGAACGCAAGCGACTGTGAGAATCGTGGATCAGTGTAGTAAC 138
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 262 GTGACGAATACTGCGACCGGAACGCAAGCCACAGTGAGAATCGTGGATCAGTGTAGTAAC 321
Query 139 GGTGGTTTGGACTTAGAGGAGGGTGTTTTCAGACAGCTTGATACTAACAGTCAGGGAAAC 198
|| |||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 322 GGGGGTTTGGATTTAGACGAAGGTGTTTTCAGACAGCTTGATACTAACGGTCAGGGAAAC 381
Query 199 GCTCGTGGTCACTTAATAGTCAACTACGAGTTTGTCAACTGCT 241
|| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 382 GCCCGTGGGCACTTGATTGTCAACTACGAGTTTGTCAACTGCT 424
Score = 143 bits (77), Expect = 6e-34
Identities = 79/80 (99%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1 ATGTCAAGACTTAGCTTATGTGTGTTTGTGTTGCTATGTGCGTTTGCGGCCAAAGCAGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAAGACTTAGCTTATGTGTGTTTGTGTTGCTATGTGCGTTTGCGGCCAAAGCAGCC 60
Query 61 GCTCAATCCGCACCTAACGT 80
||||| ||||||||||||||
Sbjct 61 GCTCAGTCCGCACCTAACGT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8401417420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5