BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04720.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477741 jgi|Araly1|477741|fgenesh2_kg.3__442__AT3G04720.1 1096 0.0
> Ahg477741 jgi|Araly1|477741|fgenesh2_kg.3__442__AT3G04720.1
Length=747
Score = 1096 bits (593), Expect = 0.0
Identities = 706/759 (93%), Gaps = 13/759 (2%)
Strand=Plus/Plus
Query 17 AAAGACTTATCGATCATGAAGATCAGACTTAGCATAACCATCATACTTTTATCATACACA 76
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGACTTATCGATCATGAAGATCGGACTTAGCATAACCATCATACTTTTATCATACACG 60
Query 77 GTGGCTACGGTGGCCGGACAACAATGCGGTCGTCAAGGCGGTGGTCGAACTTGTCCCGGT 136
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GTGGCTACGGTTGCCGGACAACAATGCGGTCGTCAAGGCGGTGGTCGGACTTGTCCCGGA 120
Query 137 AACATCTGCTGCAGTCAGTACGGTTACTGTGGTACCACCGCGGACTACTGTTCTCC-GAC 195
|||||||||||||| || | ||| |||||||| ||||||||||||||||||||||| ||
Sbjct 121 AACATCTGCTGCAGCCAATTCGGCTACTGTGGCACCACCGCGGACTACTGTTCTCCGGA- 179
Query 196 CAACAACTGTCAGAGCAATTGTTGGGGAAGTGGGCCTAGCGGACCAGGGGAGAGCGCGTC 255
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 180 CAACAACTGCCAGAGCAATTGTTGGGGAAGCGGACCTAGCGGACCAGGGGAGAGCGCGTC 239
Query 256 GAACGTACGCGCCACCTACCATTTCTATAATCCGGCGCAGAATAATTGGGATTTGAGAGC 315
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 GAACGTACGCGCCACCTACCATTTCTACAATCCGGCGCAGAATAATTGGGATTTGAGAGC 299
Query 316 CGTGAGTGCTTATTGCTCCACGTGGGATGCTGATAAGCCGTACGCATGGCGGAGCAAGTA 375
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 300 CGTGAGTGCTTATTGCTCCACGTGGGATGCTGATAAGCCATACGCATGGCGAAGTAAGTA 359
Query 376 TGGCTGGACCGCCTTCTGCGGGCCGGCAGGACCTCGTGGTCAAGCTTCTTGCGGCAAGTG 435
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TGGATGGACCGCCTTCTGCGGACCGGCAGGACCTCGTGGTCAAGCATCTTGCGGCAAGTG 419
Query 436 TTTAAGGGTGAAGAACACAAGAACAAATGCTGCAGTAACTGTGAGAATAGTGGACCAATG 495
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 CTTAAGGGTAAAGAACACAAGAACAAATGCTGCAGTAACGGTGAGAATAGTGGACCAATG 479
Query 496 CAGCAACGGAGGCTTGGATTTGGATGTAGCAATGTTCAATCAAATAGACACCGATGGTTT 555
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TAGCAATGGAGGATTGGATTTGGATGTTGCAATGTTCAATCAAATAGACACCGATGGTTT 539
Query 556 TGGCTATCAACAAGGCCATCTCATTGTTGACTACCAATTTGTCGACTGTGGCAATGAGCT 615
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 TGGCTATCAACAAGGCCATCTCATTGTTGATTACCAATTTGTCGACTGTGGCAATGAGCT 599
Query 616 CATTGGGCAGCCTGATTCCAGAAACATGCTTGTTTCGGCCATTGATCGCGTTTGATATTA 675
||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 600 CATTGGGCAGCCTGATTTCAAAAACATCCTTGTTTCGGCCATTGATCGCGTTTGATATTA 659
Query 676 TGTAATGATTTTGAGGTCAATATCGATCGGTCTACATAAAAATAATAAAGACCGCTATAT 735
||||||||||| ||||||||||||| | ||||| | | ||||||| |||| | ||||
Sbjct 660 TGTAATGATTTCGAGGTCAATATCG---G-TCTACGCATATATAATAAGGACCTCGATAT 715
Query 736 ATGTATTGTCGAGGGATATATGTTTCGTATCAATAAGGA 774
|||| || ||| |||| ||||||||||||||||||
Sbjct 716 ATGT---GTAGAG--ATAT--GTTTCGTATCAATAAGGA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5