BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04730.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477742 jgi|Araly1|477742|fgenesh2_kg.3__443__AT3G04730.1 1681 0.0
Ahg470401 jgi|Araly1|470401|fgenesh2_kg.1__355__AT1G04250.1 73.1 5e-12
> Ahg477742 jgi|Araly1|477742|fgenesh2_kg.3__443__AT3G04730.1
Length=1201
Score = 1681 bits (910), Expect = 0.0
Identities = 1150/1255 (92%), Gaps = 60/1255 (5%)
Strand=Plus/Plus
Query 1 ATTTAGCCCTTTGTTTCTCTACACACATCTCACATCCCCCTAtctctctctctctTCAAA 60
||||||||||||||||||||||||||||||||||| || || ||||||||||||| || |
Sbjct 1 ATTTAGCCCTTTGTTTCTCTACACACATCTCACAT-CCGCTCTCTCTCTCTCTCTCCAGA 59
Query 61 CGTTTTAGTTCCCCaaaaaaatatcaaaagaactaaaagaaaaaCCCTAGAAGCCGAAGA 120
| ||||||| ||| |||| | | | || |||| |||||||||||||||||||||
Sbjct 60 CAATTTAGTT-CCC-AAAAGA-A-C----TAA--AAAA-AAAAACCCTAGAAGCCGAAGA 108
Query 121 ATCTCCTACTCGTTGTCGATCGGATCACCTAACTAATTACTCGTTGATAATCATTATATC 180
|| | ||||||| | | | |||||||||| |||| |||||||||||| ||||||||||||
Sbjct 109 ATTTACTACTCG-T-T-G-TCGGATCACCGAACTTATTACTCGTTGAGAATCATTATATC 164
Query 181 GAGAAATATGATTAATTTTGAGGCCACGGAGCTGAGATTAGGGCTACCGGGTGGGAATCA 240
| ||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||
Sbjct 165 AAAAAATATGATTAATTTCGAGGCGACGGAGCTGAGGTTAGGGCTGCCGGGTGGTAATCA 224
Query 241 CGGAGGAGAAATGGCT-GGAAAAAATAATGGTAAAAGAGGATTTTCTGAGACTGTTGATC 299
|||||||||||||| | |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 225 CGGAGGAGAAATGG-TCGGAAAAAATAATGGCAAAAGAGGATTTTCTGAGACCGTTGATC 283
Query 300 TCAAACTGAATCTTTCATCGACGGCTATGGATTCAGTTTCCAAAGTCGATTTAGAGAATA 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TCAAACTGAATCTTTCATCAACGGCTATGGATTCAGTTTCCAAAGTCGATTTAGAGAATA 343
Query 360 TGAAGGAGAAGGTCGTAAAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGTAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 TGAAGGAGAAGGTCGTAAAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGTAC 403
Query 420 GATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGAAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 404 GATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGTAG 463
Query 480 GAAACGATAAGACTTCTGGCAGCAGTGGAGCCACCTCATCCGCCTCCGCATGTGCCACCG 539
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 464 GAAACGATAAGACTTCTGGCAGCAGTGGAGCCACCTCATCCGCATCCGTATGTGCCGCCG 523
Query 540 TGGCTTATGTGAAGGTTAGCATGGACGGTGCACCGTACCTACGGAAAATTGACTTGAAAC 599
| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 524 TCGCTTACGTGAAGGTTAGCATGGATGGCGCACCGTACCTACGGAAAATTGACTTGAAAC 583
Query 600 TCTACAAAACTTACCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCA 659
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 584 TCTACAAAACTTACCAAGATCTATCCGACGCCTTAAGCAAAATGTTTAGCTCTTTTACCA 643
Query 660 TAGGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATC 719
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TAGGCACCTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATC 703
Query 720 TTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTG 763
Query 780 TAGGAGACGTACCGTGGGAGATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TAGGAGACGTACCGTGGGAGATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGG 823
Query 840 GATCAGAAGCAATCGGACTTGCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GATCAGAAGCAATCGGACTTGCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAG 883
Query 900 TTCTCGACGACATTTCGTGTTCTTACCTAAAAAAGGAAGAAAGCCTGTTTCGATCGGTTG 959
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 884 TTCTCGACGACATTTCTTGTTCTTACCTAAAAAAGGAAGAAAGACTGTTTCGATCGGTTG 943
Query 960 GATATCTCGAACCGAG-AAAGCTAAACCGGCTCGAAACTATTGTTCCGAGCAAGGAGTTT 1018
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 944 GATATCTCGAACCGAGAAAAGCCAAACCGGCTCGAAACTACTGTTCCGAGCAAGGAGTTT 1003
Query 1019 GCttataatattaattaataataatattaatattgtggtgtattacattttaaaaa-att 1077
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||
Sbjct 1004 GCTTATAATATTAATTAATAATAATATTAATATTGTGATGTATTACA-TTTAAAAATTTT 1062
Query 1078 aaatCGTTTTTGTtatatgtattatatacatatattaatatgtatatTTAATTAGGTTGC 1137
||| || | || | || | ||| || || | |||||||||||||||||||||
Sbjct 1063 AAACCG----T-TT-T-TG---T-TAT--ATGTA-T--TATGTATATTTAATTAGGTTG- 1105
Query 1138 ATCTATTTCCGTTAAAACCAACTTTTGTTTTTACGCATTATCGTGTTGTCTATATGGTCT 1197
| | | | | | || ||||||||||||||||||||||||||||||||
Sbjct 1106 --C-A--T-C--T-------A---TT-TTTTTACGCATTATCGTGTTGTCTATATGGTCA 1146
Query 1198 GTGTCCGTAAGGCA--TC-TTAATGTGTTACTTTGACGTACCAAATTATTACTTA 1249
|||||||||||||| || ||| ||||||||||||||||| ||||||||||||||
Sbjct 1147 GTGTCCGTAAGGCACATCATTAGTGTGTTACTTTGACGTATCAAATTATTACTTA 1201
> Ahg470401 jgi|Araly1|470401|fgenesh2_kg.1__355__AT1G04250.1
Length=1037
Score = 73.1 bits (39), Expect = 5e-12
Identities = 62/72 (86%), Gaps = 5/72 (7%)
Strand=Plus/Plus
Query 387 CCAAGGCACAAGTTGTGGGATGGCCACCGGT-ACGATCTTTCCGCAAGAACGTCATG-TC 444
||||||||||||||||||||||||||||||| | |||| | ||| |||||||| ||| |
Sbjct 353 CCAAGGCACAAGTTGTGGGATGGCCACCGGTGA-GATCATACCGGAAGAACGTGATGGTT 411
Query 445 -CG-GCCAAAAA 454
|| ||||||||
Sbjct 412 TCGTGCCAAAAA 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5