BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04735.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value Ahg903298 jgi|Araly1|903298|Al_scaffold_0003_426 383 4e-106 > Ahg903298 jgi|Araly1|903298|Al_scaffold_0003_426 Length=297 Score = 383 bits (207), Expect = 4e-106 Identities = 264/290 (91%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 10 ATGAAAATAACAAATAGGTTTATGCTAGTGGCAACATTCATAGCATGTGTGTTCATAAGC 69 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAAAAAACAAATAGGTTTATGGTAGTGGCAACATTCATAGCATGTGTGTTCATAAGC 60 Query 70 AGCATGAACATGACGGTTGGAAAAGTAATTGGGTATCCAGGGTTGA-AGCCTGATCTTCC 128 ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| || Sbjct 61 AGCATGAACATGACGGTTGGAAAAGTAATTGGGTATCCAGGATTGAGA-CCTGATCTCCC 119 Query 129 TTGTGATCATCATCGGTATCCTTCTGCATGTGCACCCTCCGAACAACCAGTGAATCCTTA 188 |||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| || Sbjct 120 TTGTGATCATCATCAGTATCCTTCTGCATGTGCTCCATCCGAACAACCGGTGAATCCGTA 179 Query 189 CAGACGGGGATGTAGTAA--AATACATAGATGTAGACGCGATTCACCCCCTGCACCAATT 246 || |||||||||| | || |||||||||||||||||| ||| |||| || | ||| || Sbjct 180 CAAACGGGGATGT-G-AACTAATACATAGATGTAGACGTGATCCACCTCCA-C-CCA-TT 234 Query 247 TCTAGAAAAATGTTAATACGAGGTCAATTAATTTATAATAATGCATATAA 296 ||||||||||||||||||| || |||||| |||||||||||||||||||| Sbjct 235 TCTAGAAAAATGTTAATACAAGCTCAATTTATTTATAATAATGCATATAA 284 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11217743166 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5