BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04735.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903298 jgi|Araly1|903298|Al_scaffold_0003_426 383 4e-106
> Ahg903298 jgi|Araly1|903298|Al_scaffold_0003_426
Length=297
Score = 383 bits (207), Expect = 4e-106
Identities = 264/290 (91%), Gaps = 9/290 (3%)
Strand=Plus/Plus
Query 10 ATGAAAATAACAAATAGGTTTATGCTAGTGGCAACATTCATAGCATGTGTGTTCATAAGC 69
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAAAAACAAATAGGTTTATGGTAGTGGCAACATTCATAGCATGTGTGTTCATAAGC 60
Query 70 AGCATGAACATGACGGTTGGAAAAGTAATTGGGTATCCAGGGTTGA-AGCCTGATCTTCC 128
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||
Sbjct 61 AGCATGAACATGACGGTTGGAAAAGTAATTGGGTATCCAGGATTGAGA-CCTGATCTCCC 119
Query 129 TTGTGATCATCATCGGTATCCTTCTGCATGTGCACCCTCCGAACAACCAGTGAATCCTTA 188
|||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct 120 TTGTGATCATCATCAGTATCCTTCTGCATGTGCTCCATCCGAACAACCGGTGAATCCGTA 179
Query 189 CAGACGGGGATGTAGTAA--AATACATAGATGTAGACGCGATTCACCCCCTGCACCAATT 246
|| |||||||||| | || |||||||||||||||||| ||| |||| || | ||| ||
Sbjct 180 CAAACGGGGATGT-G-AACTAATACATAGATGTAGACGTGATCCACCTCCA-C-CCA-TT 234
Query 247 TCTAGAAAAATGTTAATACGAGGTCAATTAATTTATAATAATGCATATAA 296
||||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 235 TCTAGAAAAATGTTAATACAAGCTCAATTTATTTATAATAATGCATATAA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11217743166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5