BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04750.1
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477744 jgi|Araly1|477744|fgenesh2_kg.3__445__AT3G04750.1 3169 0.0
> Ahg477744 jgi|Araly1|477744|fgenesh2_kg.3__445__AT3G04750.1
Length=1974
Score = 3169 bits (1716), Expect = 0.0
Identities = 1895/1981 (96%), Gaps = 13/1981 (1%)
Strand=Plus/Plus
Query 1 ATGTGCTTTGTGTTGTTGTTGCGGCGAGGATTTCGATTATTTGGCACAGAATGTGGGAGC 60
|||||| || || ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1 ATGTGC-TT-TG-TGTTGTTGCGGCGAGGAATTCGATTGTTTGGCACAGAATGTGGGAGC 57
Query 61 AAGACAACCAA-ATGGGATCCTGTTCAATCACTTCAGCTGAATCATCAATCTCTTGTCTT 119
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AAGACAA-CAACATGGGATCCTGTTCAATCACTTCAGCTGAATCATCAATCTCTTGTCTT 116
Query 120 GCTCGAGAATTGCAATTCCAGGAATCAATTCAAGCAGGTTTTGGCACAGATCATGCGTTT 179
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GCTCGAGAAATGCAGTTCCAGGAATCAATTCAAGCAGGTTTTGGCACAGATCATGCGTTT 176
Query 180 CAATCTCATCTGCGATACGTTTCCCATGAGCCGTCTTATCTTCTTCTCGGCGATCACATA 239
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CAATCTCATCGGCGTTACGTTTCCCATGAGCCGTCTTATCTTCTTCTCGGCGATCACATA 236
Query 240 CCCAGAGAATCTCGACTTGGCGAAGCTTCTATTTCTTAATTTCACTCCCAACCCGAATGT 299
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 237 CCCAGAGAATCTCGACTTGGCGAAGCTTCTGTTTCTTAATTTCACTCCGAATCCGAATGT 296
Query 300 TTTTGTTTACAACACAATGATATCTGCTGTTTCGAGCTCGAAAAATGAATGCTTTGGTCT 359
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TTTTGTTTACAACACAATGATCTCTGCTGTTTCGAGCTCCAAAAATGAATGCTTTGGTCT 356
Query 360 GTATAGTTCTATGATTAGGCACCGTGTCTCTCCTGACAGGCAAACGTTTCTCTATCTCAT 419
||||||||||||||||||| ||||||| ||||| |||||||||||||||||| |||||||
Sbjct 357 GTATAGTTCTATGATTAGGTACCGTGTTTCTCCGGACAGGCAAACGTTTCTCCATCTCAT 416
Query 420 GAAAGCTTCGAGTTTTCTGTCGGAAGTGAAGCAGATCCATTGCCATATCATTGTTTCTGG 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 417 GAAAGCTTCGAGTTTTCTGTCGGAAGTGAAGCAGATCCATTGTCATATCATTGTTTCTGG 476
Query 480 GTGTTTGTCTCTTGGGAATTACCTGTGGAATTCTCTGGTTAAGTTTTACATGGAGTTGGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTGTTTGTCTCTTGGGAATTACCTGTGGAATTCTCTGGTTAAGTTTTACATGGAGTTGGG 536
Query 540 AAATTTTGGTGTTGCAGAGAAGGTGTTTGCTAGAATGCCTCATCCAGATGTCAGCTCTTT 599
|| ||| ||| |||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 537 AAGTTTGGGTTTTGCCGAGAAGGTGTTTGCTATAATGCCTCAACCAGATGTCAGCTCTTT 596
Query 600 TAACGTTATGATTGTTGGTTATGCTAAGCAGGGTTTTAGTTTAGAGGCACTTAAACTGTA 659
|||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||
Sbjct 597 TAACGTTATGATTGTTGGTTATGCGAAGCAGGGGTTTGGTTTAGAGGCACTGGAACTGTA 656
Query 660 TTTTAAGATGGTTAGTGATGGTATTGAACCTGATGAGTACACTGTGCTGAGTCTTCTTGT 719
|| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 657 TTATAAGATGGTTAGTGATGGTATTGAACCTGATGAGTACACAGTGCTGGGTCTTCTACT 716
Query 720 TTGTTGTGGTCATTTATCAGATATTAGACTTGGGAAGGGAGTTCATGGTTGGATTGAGAG 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 TTGTTGTGGTCATTTATCAGATATTAGGCTTGGGAAGGGAGTTCATGGTTGGATTGAGAG 776
Query 780 GAGAGGACCTGTTTATTCATCTAATTTGATTCTGAGCAATGCTCTTTTGGACATGTATTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GAGAGGACCTGTTTATTCATCTAATTTGATTCTGAGCAATGCTCTTTTGGACATGTATTT 836
Query 840 CAAATGCAAAGAATCTGGTCTTGCTAAAAGAGCTTTTGATGCGATGAAGAAGAAAGACAT 899
||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 837 CAAATGCAAAGAATCCGGACTTGCTAAAAGAGCTTTTGATGCGATGCAGAAGAAAGACAT 896
Query 900 GCGCTCTTGGAACACCATGGTTGTTGGGTTTGTTAGGCTTGGGGACATGGAAGCTGCTCA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GCGCTCTTGGAACACCATGGTTGTTGGGTTTGTTAGGCTTGGGGACATGGAAGCTGCTCA 956
Query 960 GGCTGTTTTTGATCAGATGCCCAAAAGGGATCTTGTTTCTTGGAACTCTCTTCTTTTTGG 1019
| |||||||||||||||||||| || ||||||||||||||||||| ||||| |||||| |
Sbjct 957 GTCTGTTTTTGATCAGATGCCCCAACGGGATCTTGTTTCTTGGAATTCTCTGCTTTTTTG 1016
Query 1020 TTATTCGAAGAAGGGATGTGACCAAAGAACCGTCAGAGAATTGTTCTATGAAATGAC-GA 1078
||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 1017 TTACTCGAAGAAGGGATGTGACCAAAGAGCCGTCAGAGAATTGTTCTATGAAATG-CTGA 1075
Query 1079 TCGTGGAGAAGGTCAAGCCAGACCGCGTCACTATGGTTAGTTTGATAAGTGGTGCAGCAA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TCGTGGAGAAGGTCAAGCCAGACCGCGTCACTATGGTTAGTTTGATAAGTGGTGCAGCAA 1135
Query 1139 ACAACGGAGAACTGAGCCATGGAAGATGGGTGCACGGATTAGTGATCCGTCTGCAACTGA 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ACAACGGAGAACTGAGCCATGGAAGATGGGTGCACGGATTAGTGATCCGTCTGCAACTGG 1195
Query 1199 AAGGTGATGCCTTTCTGAGTTCGGCTCTGATAGATATGTACTGCAAATGTGGTATCATTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1196 AAGGTGATGCCTTTCTGAGTTCGGCTCTGATAGATATGTACTGCAAATGTGGTCTCATTG 1255
Query 1259 AGCGGGCTTTTATGGTTTTCAAGACAGCTACCGAGAAAGATGT-CGCGCTATGGACATCA 1317
|||||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 1256 AGCGGGCTTTCATGGTTTTCAAGACAGCTACTGAGAAAGATGTTC-CGCTATGGACATCA 1314
Query 1318 ATGATAACTGGGTTGGCCTTCCACGGAAATGGCCAGCAAGCTCTGCAGCTATTCGGAAGA 1377
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1315 ATGATAACTGGGTTGGCCTTCCATGGAAATGGCCAGCAAGCTCTGCAGCTATTCAAAAGA 1374
Query 1378 ATGCAAGAAGAAGGTGTGACGCCAAACAATGTCACTCTGCTCGCTGTCCTGACAGCTTGC 1437
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1375 ATGCAAGAAGAAGATGTGACGCCAAACAAAGTCACTCTGCTCGCTGTCCTGACAGCTTGC 1434
Query 1438 AGTCATAGCGGACTCGTGGAGGAAGGGCTACACGTTTTCAACCACATGAAGGATAAATTC 1497
||||| |||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct 1435 AGTCACAGCGGACTTGTGGAGGAAGGGCTTCACGTTTTCTACCACATGAAGGAAAAATTC 1494
Query 1498 GGCTTTGACCCTGAAACTGAGCATTACGGAAGCCTTGTGGATCTGTTGTGTAGGGCAGGG 1557
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GGCTTTCACCCTGAAACCGAGTATTACGGAAGCCTTGTGGATCTGTTGTGTAGGGCAGGG 1554
Query 1558 AGAGTAGAGGAAGCGAAAGACATAGTGCAAAAGAAGATGCCAATGAGACCAAGTCAGTCA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGAGTAGAGGAAGCGAAAGACATAGTGCAAAAGAAGATGCCAATGAGACCAAGTCAGTCA 1614
Query 1618 ATGTGGGGATCAATCTTAAGTGCTTGTCGGGGAGGTGAAGACATTGAAACCGCAGAGTTG 1677
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 ATGTGGGGATCAATTTTAAGTGCTTGTCGGGGAGGTGAAGACATTGAAACCGCAGAGTTG 1674
Query 1678 GCTTTAACTGAATTGCTTAAGTTGGAACCTGAAAAAGAAGGCGGATACGTTTTGTTGTCT 1737
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GCTTTATCGGAATTGCTTAAGTTGGAACCTGAAAAAGAAGGCGGATACGTTTTGTTGTCT 1734
Query 1738 AATATATATGCAACCGTTGGAAGATGGGGATATTCAGACAAGACGAGAGAAGCAATGGAG 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 AATATATATGCAACCGTTGGAAGATGGGGATATTCAGACAAGACGAGAGAAGCAATGGAG 1794
Query 1798 AATCGCGGAGTAAAGAAGACTGCAGGATATAGTAGTGTAGTTGGAGTAGAGGGACTTCAT 1857
| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1795 AGTAGCGGAGTAAAGAAGACTGCAGGATATAGTAGTGTAGTTGGAGTAGAGGGAGTTCAT 1854
Query 1858 AGGTTTGTGGCTGCAGAGAAGCAAAACCATCCAAGATGGACGGAGATAAAAAGAATATTG 1917
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1855 AGCTTTGTGGCTGCAGAGAAGCAGAACCATCCAAGATGGACGGAGATAAAAAGAATATTG 1914
Query 1918 CAGCATCTGTATAATGAAATGAAGCCAAAA-TTGGATTGTTTGGACTTGTTAG-AA-ATA 1974
||||||||| |||| ||||||||| ||||| |||||| ||| ||||||||||| || |||
Sbjct 1915 CAGCATCTGCATAACGAAATGAAGTCAAAAATTGGATCGTT-GGACTTGTTAGGAACATA 1973
Query 1975 G 1975
|
Sbjct 1974 G 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74656880200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5