BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04770.1 Length=1211 Score E Sequences producing significant alignments: (Bits) Value Ahg477746 jgi|Araly1|477746|fgenesh2_kg.3__447__AT3G04770.1 1338 0.0 Ahg926602 jgi|Araly1|926602|scaffold_202163.1 584 5e-166 Ahg352427 jgi|Araly1|352427|fgenesh1_pg.C_scaffold_6003020 211 9e-54 > Ahg477746 jgi|Araly1|477746|fgenesh2_kg.3__447__AT3G04770.1 Length=1083 Score = 1338 bits (724), Expect = 0.0 Identities = 916/1003 (91%), Gaps = 35/1003 (3%) Strand=Plus/Plus Query 6 CgaaagaagagaaagaaacagagcgaaaaaacgaaaaTGGCGGCGAACGGAGTAGCGACG 65 ||| ||||||||||||||||||| | || || ||||||||||||||| |||| ||| ||| Sbjct 1 CGAGAGAAGAGAAAGAAACAGAGAG-AAGAA-GAAAATGGCGGCGAATGGAGGAGCTACG 58 Query 66 GCGGGACGTCAGGTATCAGAGAAAGAAGCTGATATCCAGATGATGTTATCAGCCGATGTT 125 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 GCGGCTGGTCAGGTGTCAGAGAAAGAAGCTGATATCCAGATGATGTTATCAGCCGATGTT 118 Query 126 CACCTTGGTACCAAAAACTGCAACTATCAGATGGAGCGTTATGTCTTCAAAAGACGCGAC 185 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| || Sbjct 119 CACCTTGGTACCAAAAATTGCAATTATCAGATGGAGCGTTATGTCTTCAAAAGACGCAAC 178 Query 186 GACGGTATTTACATAATCAATCTTGGAAAGACATGGGACAAGCTTCAGATGGCTGCTAGG 245 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 179 GACGGTATTTACATTATCAATCTTGGAAAGACATGGGATAAGCTTCAGATGGCTGCTAGG 238 Query 246 GTTATTGTAGCAATCGAAAACCCAAAAGACATAATTGTTCAATCAGCCAGGCCTTATGGA 305 || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 239 GTAATTGTAGCAATCGAAAACCCTAAAGACATAATTGTTCAATCAGCTAGGCCTTATGGG 298 Query 306 CAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGAAGACAC 365 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 299 CAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGCTAATGCAATTGCTGGAAGACAC 358 Query 366 ACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATT 425 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 359 ACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCCAGGTTGTTGATT 418 Query 426 CTCACCGACCCAAGAACCGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCA 485 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 419 CTCACCGACCCAAGAACCGACCATCAGCCAATCAAGGAAGGTGCGTTGGGAAACATTCCG 478 Query 486 ACTATTGCCTTCTGTGACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCT 545 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ACAATCGCCTTCTGTGACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCT 538 Query 546 AACAACAAGGGAAAACACAGCATTGGTTGCTTGTTCTGGCTTTTGGCTCGTATGGTTCTC 605 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 539 AACAACAAGGGAAAACACAGCATTGGTTGCCTGTTCTGGCTTTTGGCTCGTATGGTTCTG 598 Query 606 CAAATGCGTGGAACCATTCTC-GCAGCTCAGAAATGGGATGTCATGGTAAACTCTAGAAA 664 ||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||| Sbjct 599 CAAATGCGTGGGACCATTCTCCG-AGCTCAGAAATGGGATGTCATGGTAAAGTCTAGAAA 657 Query 665 TACT-ATCAGGACTTGTGTTTCTCCAACACCAGACAAA-GATCTTGACTTGTTTCTGTTG 722 ||| |||| || |||||||||||||||| | ||| ||| ||||||||||| ||||| Sbjct 658 CACTTATCACT-CTA-TGTTTCTCCAACACCAAAAAAAAGATGTTGACTTGTTTGTGTTG 715 Query 723 TGTAGGTGGATCTGTTTTTCTACAGGGAGCCCGAAGAAGCAAAGCAAGAGGGTGATGAAG 782 ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| Sbjct 716 TGTAGGTGGATCTGTTTTTCTACAGGGAGCCTGAAGAAGCAAAGCAAGAAG---ATGA-- 770 Query 783 AAGCTGAAGTACAGGCCGATTATGGAATGGTTGGTGGTGACCAGTGGACCACTGCTCAAA 842 ||||| | | | ||||||||||||||||||||||||||||||||||||||| Sbjct 771 ----TGAAG-A-A------T-ATGGAATGGTTGGTGGTGACCAGTGGACCACTGCTCAAA 817 Query 843 TATCTGATGCTGCATGGTCTGGTGAAGTCGAACAGCCAATTTCTGCTGCACCTGCAGTTG 902 | |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| Sbjct 818 TCCCTGATGCTGCATGGCCTGGTGAACCCGAACAGCCGATTTCTGCTGCACCTGCAGTTG 877 Query 903 GCG-TTAC---C--GTTGCTGCTGGATGGGAGGCTGCTTCTGTTCCAGCTGCTGGTTGGG 956 ||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 878 GCGGTTAGTTTCTTGTTGCTGCTGGATGGGACACTGCTTCTGTTCCAGCTGCTGGTTGGG 937 Query 957 AGTAAAAGCTCTCTT-ATT--AGTTTAGCTCGAACTCGGTTAG 996 |||||||| || ||| ||| ||||||||||||| |||||||| Sbjct 938 AGTAAAAGTTCCCTTCATTTTAGTTTAGCTCGAATTCGGTTAG 980 Score = 113 bits (61), Expect = 3e-24 Identities = 83/93 (89%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 1083 GACCATGAG-ATTAGGTGCATTTTTGCCGGTATTTCCAAGTTTCAACCATATAACGGTAT 1141 |||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 992 GACCATTAGCATTAGGTGCATTTTTGCCGGTATTTCCAAGTTTCAACCGTATAAGGGTAT 1051 Query 1142 TTTATCGTT-GATTCTTTCATTGAATTGAACAT 1173 || ||| || | || |||||||||||||| ||| Sbjct 1052 TTCATCTTTAG-TTATTTCATTGAATTGACCAT 1083 > Ahg926602 jgi|Araly1|926602|scaffold_202163.1 Length=939 Score = 584 bits (316), Expect = 5e-166 Identities = 491/575 (85%), Gaps = 14/575 (2%) Strand=Plus/Plus Query 85 AGAAAGAAGCTGATATCCA-GATGATGTTAT-CAGCCGATGTTCACCTTGGTACCAAAAA 142 |||| |||||||| || || ||||||| | | | || || ||||| ||||| ||||| || Sbjct 64 AGAAGGAAGCTGACAT-CAGGATGATG-TGTGCTGCTGAGGTTCATCTTGGAACCAAGAA 121 Query 143 CTGCAACTATCAGATGGAGCGTTATGTCTTCAAAAGACGCGACGACGGTATTTACATAAT 202 ||||| || |||||||||||||| |||||||| |||||| |||| ||||||||||| | Sbjct 122 TTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGGTATTTACATCTT 181 Query 203 CAATCTTGG-AAAGACATGGGACAAGCTTCAGATGGCTGCTAGGGTTATTGTAGCAATCG 261 ||| ||||| ||| |||||||| ||||| |||||||||||||| |||||||| || || | Sbjct 182 CAACCTTGGCAAA-ACATGGGATAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTG 240 Query 262 AAAACCCAAAAGACATAATTGTTCAATCAGCCAGGCCTTATGGACAAAGAGCTGTCTTGA 321 | |||||| | ||||| |||||||| || || ||||| |||||||| |||||||| |||| Sbjct 241 AGAACCCACAGGACATCATTGTTCAGTCTGCTAGGCCCTATGGACAGAGAGCTGTGTTGA 300 Query 322 AGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGAAGACACACTCCTGGTACTTTCA 381 ||||||||||||||||||| | ||||| ||||||||||| |||||||||||||| |||| Sbjct 301 AGTTTGCTCAGTACACTGGAGCCAATGCCATTGCTGGAAGGCACACTCCTGGTACCTTCA 360 Query 382 CTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAA 441 | || || |||||||| || |||||||| |||||| || ||||||| || |||||||||| Sbjct 361 CCAATCAGATGCAGACATCCTTCAGTGAACCTAGGCTGCTGATTCTTACTGACCCAAGAA 420 Query 442 CCGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAA-CTATTGCCTTCTGT 500 | ||||| ||||||||||||||||||||||||||||||||||||| | ||||| |||||| Sbjct 421 CTGACCACCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAATC-ATTGCTTTCTGT 479 Query 501 GACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCTAACAACAAGGGAAAA 560 ||||| || ||||||||| ||||||| ||||||||||| ||||| |||||||||||||| Sbjct 480 GACACTGACTCTCCAATGAGATTTGTTGACATTGGTATCCCTGCCAACAACAAGGGAAAG 539 Query 561 CACAGCATTGGTTG-CTTGTTCTGGCTT-TTGGCTCGTATGGTTCTCCAAATGCGTGGAA 618 ||||||||||| || ||| ||||||||| ||| |||| ||||| || || |||||||||| Sbjct 540 CACAGCATTGGGTGTCTT-TTCTGGCTTCTTG-CTCGCATGGTCCTTCAGATGCGTGGAA 597 Query 619 CCATTC-TCGCAGCTCAGAAATGGGATGTCATGGT 652 ||||| | || || ||||| |||||||||||||| Sbjct 598 CCATTGGT-GCTGCACAGAAGTGGGATGTCATGGT 631 > Ahg352427 jgi|Araly1|352427|fgenesh1_pg.C_scaffold_6003020 Length=672 Score = 211 bits (114), Expect = 9e-54 Identities = 122/126 (97%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 300 TATGGACAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGA 359 ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 502 TATGGTCAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGCTAATGCAATTGCTGGA 561 Query 360 AGACACACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTG 419 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 562 AGACATACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTG 621 Query 420 TTGATT 425 |||||| Sbjct 622 TTGATT 627 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45213779562 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5