BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04770.1
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477746 jgi|Araly1|477746|fgenesh2_kg.3__447__AT3G04770.1 1338 0.0
Ahg926602 jgi|Araly1|926602|scaffold_202163.1 584 5e-166
Ahg352427 jgi|Araly1|352427|fgenesh1_pg.C_scaffold_6003020 211 9e-54
> Ahg477746 jgi|Araly1|477746|fgenesh2_kg.3__447__AT3G04770.1
Length=1083
Score = 1338 bits (724), Expect = 0.0
Identities = 916/1003 (91%), Gaps = 35/1003 (3%)
Strand=Plus/Plus
Query 6 CgaaagaagagaaagaaacagagcgaaaaaacgaaaaTGGCGGCGAACGGAGTAGCGACG 65
||| ||||||||||||||||||| | || || ||||||||||||||| |||| ||| |||
Sbjct 1 CGAGAGAAGAGAAAGAAACAGAGAG-AAGAA-GAAAATGGCGGCGAATGGAGGAGCTACG 58
Query 66 GCGGGACGTCAGGTATCAGAGAAAGAAGCTGATATCCAGATGATGTTATCAGCCGATGTT 125
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GCGGCTGGTCAGGTGTCAGAGAAAGAAGCTGATATCCAGATGATGTTATCAGCCGATGTT 118
Query 126 CACCTTGGTACCAAAAACTGCAACTATCAGATGGAGCGTTATGTCTTCAAAAGACGCGAC 185
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 119 CACCTTGGTACCAAAAATTGCAATTATCAGATGGAGCGTTATGTCTTCAAAAGACGCAAC 178
Query 186 GACGGTATTTACATAATCAATCTTGGAAAGACATGGGACAAGCTTCAGATGGCTGCTAGG 245
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 179 GACGGTATTTACATTATCAATCTTGGAAAGACATGGGATAAGCTTCAGATGGCTGCTAGG 238
Query 246 GTTATTGTAGCAATCGAAAACCCAAAAGACATAATTGTTCAATCAGCCAGGCCTTATGGA 305
|| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 239 GTAATTGTAGCAATCGAAAACCCTAAAGACATAATTGTTCAATCAGCTAGGCCTTATGGG 298
Query 306 CAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGAAGACAC 365
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 299 CAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGCTAATGCAATTGCTGGAAGACAC 358
Query 366 ACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATT 425
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 ACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCCAGGTTGTTGATT 418
Query 426 CTCACCGACCCAAGAACCGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCA 485
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 419 CTCACCGACCCAAGAACCGACCATCAGCCAATCAAGGAAGGTGCGTTGGGAAACATTCCG 478
Query 486 ACTATTGCCTTCTGTGACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCT 545
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACAATCGCCTTCTGTGACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCT 538
Query 546 AACAACAAGGGAAAACACAGCATTGGTTGCTTGTTCTGGCTTTTGGCTCGTATGGTTCTC 605
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 AACAACAAGGGAAAACACAGCATTGGTTGCCTGTTCTGGCTTTTGGCTCGTATGGTTCTG 598
Query 606 CAAATGCGTGGAACCATTCTC-GCAGCTCAGAAATGGGATGTCATGGTAAACTCTAGAAA 664
||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 599 CAAATGCGTGGGACCATTCTCCG-AGCTCAGAAATGGGATGTCATGGTAAAGTCTAGAAA 657
Query 665 TACT-ATCAGGACTTGTGTTTCTCCAACACCAGACAAA-GATCTTGACTTGTTTCTGTTG 722
||| |||| || |||||||||||||||| | ||| ||| ||||||||||| |||||
Sbjct 658 CACTTATCACT-CTA-TGTTTCTCCAACACCAAAAAAAAGATGTTGACTTGTTTGTGTTG 715
Query 723 TGTAGGTGGATCTGTTTTTCTACAGGGAGCCCGAAGAAGCAAAGCAAGAGGGTGATGAAG 782
||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 716 TGTAGGTGGATCTGTTTTTCTACAGGGAGCCTGAAGAAGCAAAGCAAGAAG---ATGA-- 770
Query 783 AAGCTGAAGTACAGGCCGATTATGGAATGGTTGGTGGTGACCAGTGGACCACTGCTCAAA 842
||||| | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 771 ----TGAAG-A-A------T-ATGGAATGGTTGGTGGTGACCAGTGGACCACTGCTCAAA 817
Query 843 TATCTGATGCTGCATGGTCTGGTGAAGTCGAACAGCCAATTTCTGCTGCACCTGCAGTTG 902
| |||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 818 TCCCTGATGCTGCATGGCCTGGTGAACCCGAACAGCCGATTTCTGCTGCACCTGCAGTTG 877
Query 903 GCG-TTAC---C--GTTGCTGCTGGATGGGAGGCTGCTTCTGTTCCAGCTGCTGGTTGGG 956
||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 878 GCGGTTAGTTTCTTGTTGCTGCTGGATGGGACACTGCTTCTGTTCCAGCTGCTGGTTGGG 937
Query 957 AGTAAAAGCTCTCTT-ATT--AGTTTAGCTCGAACTCGGTTAG 996
|||||||| || ||| ||| ||||||||||||| ||||||||
Sbjct 938 AGTAAAAGTTCCCTTCATTTTAGTTTAGCTCGAATTCGGTTAG 980
Score = 113 bits (61), Expect = 3e-24
Identities = 83/93 (89%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 1083 GACCATGAG-ATTAGGTGCATTTTTGCCGGTATTTCCAAGTTTCAACCATATAACGGTAT 1141
|||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 992 GACCATTAGCATTAGGTGCATTTTTGCCGGTATTTCCAAGTTTCAACCGTATAAGGGTAT 1051
Query 1142 TTTATCGTT-GATTCTTTCATTGAATTGAACAT 1173
|| ||| || | || |||||||||||||| |||
Sbjct 1052 TTCATCTTTAG-TTATTTCATTGAATTGACCAT 1083
> Ahg926602 jgi|Araly1|926602|scaffold_202163.1
Length=939
Score = 584 bits (316), Expect = 5e-166
Identities = 491/575 (85%), Gaps = 14/575 (2%)
Strand=Plus/Plus
Query 85 AGAAAGAAGCTGATATCCA-GATGATGTTAT-CAGCCGATGTTCACCTTGGTACCAAAAA 142
|||| |||||||| || || ||||||| | | | || || ||||| ||||| ||||| ||
Sbjct 64 AGAAGGAAGCTGACAT-CAGGATGATG-TGTGCTGCTGAGGTTCATCTTGGAACCAAGAA 121
Query 143 CTGCAACTATCAGATGGAGCGTTATGTCTTCAAAAGACGCGACGACGGTATTTACATAAT 202
||||| || |||||||||||||| |||||||| |||||| |||| ||||||||||| |
Sbjct 122 TTGCAATTACCAGATGGAGCGTTACGTCTTCAAGAGACGCAACGATGGTATTTACATCTT 181
Query 203 CAATCTTGG-AAAGACATGGGACAAGCTTCAGATGGCTGCTAGGGTTATTGTAGCAATCG 261
||| ||||| ||| |||||||| ||||| |||||||||||||| |||||||| || || |
Sbjct 182 CAACCTTGGCAAA-ACATGGGATAAGCTCCAGATGGCTGCTAGAGTTATTGTTGCCATTG 240
Query 262 AAAACCCAAAAGACATAATTGTTCAATCAGCCAGGCCTTATGGACAAAGAGCTGTCTTGA 321
| |||||| | ||||| |||||||| || || ||||| |||||||| |||||||| ||||
Sbjct 241 AGAACCCACAGGACATCATTGTTCAGTCTGCTAGGCCCTATGGACAGAGAGCTGTGTTGA 300
Query 322 AGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGAAGACACACTCCTGGTACTTTCA 381
||||||||||||||||||| | ||||| ||||||||||| |||||||||||||| ||||
Sbjct 301 AGTTTGCTCAGTACACTGGAGCCAATGCCATTGCTGGAAGGCACACTCCTGGTACCTTCA 360
Query 382 CTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAA 441
| || || |||||||| || |||||||| |||||| || ||||||| || ||||||||||
Sbjct 361 CCAATCAGATGCAGACATCCTTCAGTGAACCTAGGCTGCTGATTCTTACTGACCCAAGAA 420
Query 442 CCGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAA-CTATTGCCTTCTGT 500
| ||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 421 CTGACCACCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAATC-ATTGCTTTCTGT 479
Query 501 GACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCTAACAACAAGGGAAAA 560
||||| || ||||||||| ||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 480 GACACTGACTCTCCAATGAGATTTGTTGACATTGGTATCCCTGCCAACAACAAGGGAAAG 539
Query 561 CACAGCATTGGTTG-CTTGTTCTGGCTT-TTGGCTCGTATGGTTCTCCAAATGCGTGGAA 618
||||||||||| || ||| ||||||||| ||| |||| ||||| || || ||||||||||
Sbjct 540 CACAGCATTGGGTGTCTT-TTCTGGCTTCTTG-CTCGCATGGTCCTTCAGATGCGTGGAA 597
Query 619 CCATTC-TCGCAGCTCAGAAATGGGATGTCATGGT 652
||||| | || || ||||| ||||||||||||||
Sbjct 598 CCATTGGT-GCTGCACAGAAGTGGGATGTCATGGT 631
> Ahg352427 jgi|Araly1|352427|fgenesh1_pg.C_scaffold_6003020
Length=672
Score = 211 bits (114), Expect = 9e-54
Identities = 122/126 (97%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 300 TATGGACAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGA 359
||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 502 TATGGTCAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGCTAATGCAATTGCTGGA 561
Query 360 AGACACACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTG 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGACATACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTG 621
Query 420 TTGATT 425
||||||
Sbjct 622 TTGATT 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45213779562
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5