BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G04780.1

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477747 jgi|Araly1|477747|fgenesh2_kg.3__448__AT3G04780.1         1168    0.0  


> Ahg477747 jgi|Araly1|477747|fgenesh2_kg.3__448__AT3G04780.1
Length=741

 Score = 1168 bits (632),  Expect = 0.0
 Identities = 708/743 (95%), Gaps = 12/743 (2%)
 Strand=Plus/Plus

Query  1    GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAG--  58
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  1    GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAGAA  60

Query  59   aaaaaaaaaaaaaCTCGCGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT  118
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AAAAAAAAAAAAACTCACGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT  120

Query  119  TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGTCTTAACCAAAGCTCAAGTCA  178
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  121  TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGCCTTAACCAAAGCTCAAGTCA  180

Query  179  CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG  240

Query  239  TGATGCTGATGAACAACTTCTCATCTATATTCCTTTTAACCAAGTTATCAAACTACATTC  298
            ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct  241  TGATGCTGATGAACAACTTCTGATCTATATTCCTTTTAACCAAGTTATCAAATTACATTC  300

Query  299  CTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA  358
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA  360

Query  359  AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCAAGCGACACCGCTGAACTAAC  418
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  361  AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCTAGCGACACCGCTGAACTAAC  420

Query  419  TGAAGAAAACCTTAAGGGAAAACCGGTGGTCCT-AAAGTACGTAAAGTTTCAGAATGTTC  477
            |||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct  421  TGAAGAAAACCTCAAGGGAAAACCGGTGGTCCTTAAA-TACGTCAAGTTTCAGAATGTTC  479

Query  478  GTAGCTTGACGATCTTCATCGAAGCCAACCAATCAGGTTCTGAGGTCACCAAGGTTCAGA  537
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  480  GTAGCTTGACGATCTTCATCGAAGACAACCAATCAGGTTCTGAGGTCACCAAGGTTCGGA  539

Query  538  AGATTGCTCTCTATGGCTCAACGGTGGAGACGACTGATATGAAGGGATTGAAAAAGATTG  597
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  540  AGATTGCTCTCTATGGCTCAACGGTGGAGACTACTGATATGAAGGGATTGAAAAAGATTG  599

Query  598  AAGATCACTGAGCATACAAAAGTGTTTTAATCATATGATCGTATATCAGTTTGATTTCTA  657
            |||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||| 
Sbjct  600  AAGATCACTGAGCAAACAAAAGTGTTTTAAACATATGATCATATATCACTTTGATTTCTG  659

Query  658  GTGTTCTATTGCG-TTTCATCGTTTGttttttacttacttttt----tt-t-GAATTAAA  710
            ||||||||| ||| ||| |||||| |||||| ||| |||||||    || | | ||||||
Sbjct  660  GTGTTCTATCGCGCTTT-ATCGTTCGTTTTTCACTGACTTTTTAAAGTTATTGGATTAAA  718

Query  711  ATAGACCAGAACTTGTGATTGCC  733
            ||||||| ||||||||| |||||
Sbjct  719  ATAGACCTGAACTTGTGCTTGCC  741



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29850244011


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5