BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04780.1 Length=808 Score E Sequences producing significant alignments: (Bits) Value Ahg477747 jgi|Araly1|477747|fgenesh2_kg.3__448__AT3G04780.1 1168 0.0 > Ahg477747 jgi|Araly1|477747|fgenesh2_kg.3__448__AT3G04780.1 Length=741 Score = 1168 bits (632), Expect = 0.0 Identities = 708/743 (95%), Gaps = 12/743 (2%) Strand=Plus/Plus Query 1 GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAG-- 58 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAGAA 60 Query 59 aaaaaaaaaaaaaCTCGCGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT 118 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAAAAAAAAAAAACTCACGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT 120 Query 119 TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGTCTTAACCAAAGCTCAAGTCA 178 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGCCTTAACCAAAGCTCAAGTCA 180 Query 179 CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG 240 Query 239 TGATGCTGATGAACAACTTCTCATCTATATTCCTTTTAACCAAGTTATCAAACTACATTC 298 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 241 TGATGCTGATGAACAACTTCTGATCTATATTCCTTTTAACCAAGTTATCAAATTACATTC 300 Query 299 CTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA 358 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA 360 Query 359 AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCAAGCGACACCGCTGAACTAAC 418 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 361 AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCTAGCGACACCGCTGAACTAAC 420 Query 419 TGAAGAAAACCTTAAGGGAAAACCGGTGGTCCT-AAAGTACGTAAAGTTTCAGAATGTTC 477 |||||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||| Sbjct 421 TGAAGAAAACCTCAAGGGAAAACCGGTGGTCCTTAAA-TACGTCAAGTTTCAGAATGTTC 479 Query 478 GTAGCTTGACGATCTTCATCGAAGCCAACCAATCAGGTTCTGAGGTCACCAAGGTTCAGA 537 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 480 GTAGCTTGACGATCTTCATCGAAGACAACCAATCAGGTTCTGAGGTCACCAAGGTTCGGA 539 Query 538 AGATTGCTCTCTATGGCTCAACGGTGGAGACGACTGATATGAAGGGATTGAAAAAGATTG 597 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 540 AGATTGCTCTCTATGGCTCAACGGTGGAGACTACTGATATGAAGGGATTGAAAAAGATTG 599 Query 598 AAGATCACTGAGCATACAAAAGTGTTTTAATCATATGATCGTATATCAGTTTGATTTCTA 657 |||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||| Sbjct 600 AAGATCACTGAGCAAACAAAAGTGTTTTAAACATATGATCATATATCACTTTGATTTCTG 659 Query 658 GTGTTCTATTGCG-TTTCATCGTTTGttttttacttacttttt----tt-t-GAATTAAA 710 ||||||||| ||| ||| |||||| |||||| ||| ||||||| || | | |||||| Sbjct 660 GTGTTCTATCGCGCTTT-ATCGTTCGTTTTTCACTGACTTTTTAAAGTTATTGGATTAAA 718 Query 711 ATAGACCAGAACTTGTGATTGCC 733 ||||||| ||||||||| ||||| Sbjct 719 ATAGACCTGAACTTGTGCTTGCC 741 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29850244011 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5