BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04780.1
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477747 jgi|Araly1|477747|fgenesh2_kg.3__448__AT3G04780.1 1168 0.0
> Ahg477747 jgi|Araly1|477747|fgenesh2_kg.3__448__AT3G04780.1
Length=741
Score = 1168 bits (632), Expect = 0.0
Identities = 708/743 (95%), Gaps = 12/743 (2%)
Strand=Plus/Plus
Query 1 GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAG-- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGAGTCTAATTATTTTCTTCCACTTTCTCGATCTTTGAGATTTCTTTCAAAGGAAGAA 60
Query 59 aaaaaaaaaaaaaCTCGCGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT 118
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAAAAAAAAAACTCACGATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGT 120
Query 119 TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGTCTTAACCAAAGCTCAAGTCA 178
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGCCTTAACCAAAGCTCAAGTCA 180
Query 179 CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAG 240
Query 239 TGATGCTGATGAACAACTTCTCATCTATATTCCTTTTAACCAAGTTATCAAACTACATTC 298
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 241 TGATGCTGATGAACAACTTCTGATCTATATTCCTTTTAACCAAGTTATCAAATTACATTC 300
Query 299 CTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAA 360
Query 359 AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCAAGCGACACCGCTGAACTAAC 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 AGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCTAGCGACACCGCTGAACTAAC 420
Query 419 TGAAGAAAACCTTAAGGGAAAACCGGTGGTCCT-AAAGTACGTAAAGTTTCAGAATGTTC 477
|||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 421 TGAAGAAAACCTCAAGGGAAAACCGGTGGTCCTTAAA-TACGTCAAGTTTCAGAATGTTC 479
Query 478 GTAGCTTGACGATCTTCATCGAAGCCAACCAATCAGGTTCTGAGGTCACCAAGGTTCAGA 537
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 480 GTAGCTTGACGATCTTCATCGAAGACAACCAATCAGGTTCTGAGGTCACCAAGGTTCGGA 539
Query 538 AGATTGCTCTCTATGGCTCAACGGTGGAGACGACTGATATGAAGGGATTGAAAAAGATTG 597
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 AGATTGCTCTCTATGGCTCAACGGTGGAGACTACTGATATGAAGGGATTGAAAAAGATTG 599
Query 598 AAGATCACTGAGCATACAAAAGTGTTTTAATCATATGATCGTATATCAGTTTGATTTCTA 657
|||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 600 AAGATCACTGAGCAAACAAAAGTGTTTTAAACATATGATCATATATCACTTTGATTTCTG 659
Query 658 GTGTTCTATTGCG-TTTCATCGTTTGttttttacttacttttt----tt-t-GAATTAAA 710
||||||||| ||| ||| |||||| |||||| ||| ||||||| || | | ||||||
Sbjct 660 GTGTTCTATCGCGCTTT-ATCGTTCGTTTTTCACTGACTTTTTAAAGTTATTGGATTAAA 718
Query 711 ATAGACCAGAACTTGTGATTGCC 733
||||||| ||||||||| |||||
Sbjct 719 ATAGACCTGAACTTGTGCTTGCC 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29850244011
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5