BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04790.1
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928039 jgi|Araly1|928039|scaffold_300496.1 1421 0.0
Ahg928040 jgi|Araly1|928040|scaffold_300497.1 883 0.0
> Ahg928039 jgi|Araly1|928039|scaffold_300496.1
Length=874
Score = 1421 bits (769), Expect = 0.0
Identities = 843/878 (96%), Gaps = 8/878 (1%)
Strand=Plus/Plus
Query 26 ACCATTCTCAATCCTCTCTCTCCAATGGCTTCCTTATCCTTCGTTTCCTCTTCTCACCTT 85
||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ACCATTCTCAA---TC-CTCTCCAATGGCTTCCTTATCCTTCGTTTCCTCTTCCCACCTT 56
Query 86 ACGCTACGCACTCCTTCTATTGCCCTACGCAGCACTGGCTCTTCTCCTCGAACCTCCGTT 145
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 57 ACGCTACGCACTCCTTCTATTTCCCTACGCAGCACTGGCTCTTCTCCTAGAACCTCCGTT 116
Query 146 TCATTCTCCGTCAAGGCTCAATCCGTCGCGCTTTCACAGGACGATTTGAAGAAGCTCGCG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCATTCTCCGTCAAGGCTCAATCCGTCGCGCTTTCACAGGACGATTTGAAGAAGCTCGCG 176
Query 206 GCGGAGAAAGCTGTGGAGGCAATTAAACCTGGGATGGTTCTAGGGCTCGGAACCGGATCC 265
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 177 GCGGAGAAAGCTGTGGAGGCAATTAAACCTGGAATGGTTCTAGGTCTCGGAACCGGATCC 236
Query 266 ACCGCAGCTTTCGCTGTTGATCAGATCGGGAAACTACTCTCTTCCGGTGAACTCTACGAT 325
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACCGCAGCTTTCGCCGTTGATCAGATCGGGAAACTACTCTCTTCCGGTGAACTCTACGAT 296
Query 326 ATTGTCGGTATCCCAACGTCGAAACGAACGGAGGAACAAGCACGGTCGTTAGGGATTCCT 385
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 297 ATTGTTGGTATCCCAACGTCCAAACGAACGGAGGAACAAGCACGATCGTTAGGGATTCCT 356
Query 386 CTTGTTGGGTTAGATACACATCCGAGAATCGATCTCGCTATTGACGGAGCAGACGAGGTA 445
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTGTTGCGTTAGATACGCATCCGAGAATCGATCTCGCTATTGACGGAGCAGACGAGGTA 416
Query 446 GATCCGAATCTTGATTTAGTCAAAGGTCGTGGAGGTGCTCTTCTCCGTGAGAAAATGGTG 505
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 417 GATCCGAATCTTGATTTAGTCAAAGGTCGTGGAGGTGCTCTTCTCCGGGAGAAAATGGTG 476
Query 506 GAAGCTGTGGCTGACAAGTTTATTGTTGTGGCTGATGATACCAAACTCGTTACAGGACTC 565
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAAGCTGTGGCTGAGAAGTTTATTGTTGTGGCTGATGATACCAAACTCGTTACAGGACTC 536
Query 566 GGTGGAAGTGGATTAGCTATGCCGGTGGAAGTTGTTCAATTCTGCTGGAACTTTAATTTG 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGTGGAAGTGGATTAGCTATGCCGGTGGAAGTTGTTCAATTCTGCTGGAACTTTAATTTG 596
Query 626 ATTAGATTGCAAGACCTCTTCAAGGAATTTGGATGTGAAT-CAAAGCTTAGAGTTGATGG 684
||||||||||| || || || ||||||||||||||||| | | |||||||||||||||||
Sbjct 597 ATTAGATTGCAGGATCTGTTTAAGGAATTTGGATGTGA-TGCTAAGCTTAGAGTTGATGG 655
Query 685 TGATGGCAAGCCTTATGTGACTGATAACAGTAATTACATTATTGATTTGTATTTTAAGAC 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGATGGCAAGCCTTATGTGACTGATAACAGTAATTACATTATTGATTTGTATTTTAAGAA 715
Query 745 TCCTTTGAAGGATGGATTCGCTGCGGCTAAAGAGATTGGGAAGTTTCAAGGAGTGGTGGA 804
||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 716 TCCTTTGAAGGATGGATTCGCGGCGGCGAAAGAGATCGGCAAGTTTCAAGGAGTGGTGGA 775
Query 805 GCATGGTCTGTTTCTCGGAATGGCTACTTCTGTCATTATCGCTGGAAAGAATGGCGTTGA 864
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 776 GCATGGTCTGTTTCTAGGAATGGCTACTTCTGTGATTATCGCTGGAAAGAATGGTGTTGA 835
Query 865 AGTTATGACCAAGTGAGGTT-AAAAGTTCAATCTTTCT 901
|||||||||||||||||||| |||| ||||||||||||
Sbjct 836 AGTTATGACCAAGTGAGGTTCAAAA-TTCAATCTTTCT 872
> Ahg928040 jgi|Araly1|928040|scaffold_300497.1
Length=607
Score = 883 bits (478), Expect = 0.0
Identities = 569/612 (93%), Gaps = 10/612 (2%)
Strand=Plus/Minus
Query 1144 GAGAGATTGAGAAACT-TTCATTAGATTGGAACGAATCGCTTGACGATGCGTCTTCCAGC 1202
|||| ||||||||| | |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 607 GAGAAATTGAGAAA-TACTCATCAGATTGGAACGAATCGCTTGACGATGCGTCTCCCAGC 549
Query 1203 AACTGCAGCCAAAGCCGCAACTCCTCCGACAGCTCCGGCAACCACAGCGGATCTAGGTCC 1262
||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AACCGCCGCCAAAGCCGTAACTCCTCCGACAGCTCCGGCAACCACAGCGGATCTAGGTCC 489
Query 1263 AGAAGCAGCTCTGTAAAGCACACCAGTGGCTAAACCAGCGATCACAGTTGTCAACGAACC 1322
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 488 AGAAGCAGCTCTGTAAAGCACACCAGTGGCTAAACCAGCGATGACAGTTGTCCTCGAACC 429
Query 1323 GTCGTCTCCGTCTCTCATATACGTAACACCGCTCTCCATAGCAGCAAACATCAACCCTAC 1382
||||||||||||||||| |||||||||||| ||||||||||| || ||||||||||| |
Sbjct 428 GTCGTCTCCGTCTCTCAGATACGTAACACCACTCTCCATAGCTGCGAACATCAACCCAAT 369
Query 1383 GGATCCTAAGCAATTCCCGCCGCGTCTTGCAACGAGTCCACCGGAGTTCAAAATCCGATT 1442
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AGAGCCTAAGCAATTCCCGCCGCGTCTTGCAACGAGTCCACCGGAGTTCAAAATCCGATT 309
Query 1443 AGTTCGGATCTTTAGGGATTCGCCTCGTTCGGCGGCTC-GCATCCCCGC-AATTGTACCC 1500
|||||||||||||||||||||||||| ||||||||||| | ||||| | || |||||||
Sbjct 308 AGTTCGGATCTTTAGGGATTCGCCTCTTTCGGCGGCTCCG-ATCCC-GTTAAATGTACCC 251
Query 1501 TTGAAGGCTCCGAGAACAGATCCAGTG-CAATAACCCCAACCGGTGAAGAAGGTGAGGTT 1559
|||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||
Sbjct 250 TTGACGGCTCCGAGAACCGATCCAGTGACA-TAACCCCAACCGGTGAAGAAGGTGAGGTT 192
Query 1560 CTCTCCCCATGTTAAGCGTTTTTTCGTAGCTTCTTCTTCGAAGAGAAACTCAGGAGAAGT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 191 CTCTCCCCATGTTAAGCGTTTTTTCGTAGCTTCTTCTTCGAAGAGAAACTCCGGCGAAGT 132
Query 1620 TGGGAGTTCGTAGAGCTTACGGTACGGAAGATTGACTTGTTGGTAAGGATTGTACTGACG 1679
|||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 131 TGGGAGTTCGTATAGCTGACGGTACGGAAGATTGACTTGTTGGTAGGGATTGTACTGACG 72
Query 1680 GTACTTCTGCTGTTGTTGAT-GCCCGGTGCTATGGTTCATCGGATCCGCCATTATCAGGG 1738
||||||||| |||||||||| ||| ||||||| ||||| |||||||||||||| ||||||
Sbjct 71 GTACTTCTGGTGTTGTTGATCGCC-GGTGCTAGGGTTCGTCGGATCCGCCATTGTCAGGG 13
Query 1739 CTTCTGCGTTTC 1750
||| ||||||||
Sbjct 12 CTTTTGCGTTTC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72447645990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5