BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04810.1
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477750 jgi|Araly1|477750|fgenesh2_kg.3__451__AT3G04810.2 3432 0.0
Ahg489646 jgi|Araly1|489646|fgenesh2_kg.6__2780__AT5G28290.1 974 0.0
> Ahg477750 jgi|Araly1|477750|fgenesh2_kg.3__451__AT3G04810.2
Length=2294
Score = 3432 bits (1858), Expect = 0.0
Identities = 2121/2242 (95%), Gaps = 42/2242 (2%)
Strand=Plus/Plus
Query 1 TTTTCTTCCAATGCCT-CTTCTTCACTACCGTTGCTGTTTCTCTGGAAACGATGCCGTTC 59
|||||||||||||||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct 77 TTTTCTTCCAATGCCTAC-TCTTCACTACCGTTGCTGCTTCTCCGGAAACGATGCCGTTT 135
Query 60 TGTAGTTTCTTTCAGGAAATGCAGAAACTGGTTTCTCTAC-AAActtcttcttcttcttc 118
||||||||| | |||||||||||||||||| ||||||| | |||||| ||| ||||||
Sbjct 136 TGTAGTTTCCTCCAGGAAATGCAGAAACTGTTTTCTCT-CTCAACTTC--CTT-TTCTTC 191
Query 119 tccttcgtttttcttctCCTAAATCTGCCGATTTGAATCTCGCAACGACGCCGTTTTA-G 177
| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 192 TTCTTCG-TTTTCGTCTTCTAAATCTGCCGATTTGAATCTCGCAACGACGCCGTTTTAGG 250
Query 178 TTATAATCTCCAGAAAGATTTTATAGACGAAATTAAGAAGGAGGTGAATTTCAGAGTTTG 237
|| | | | | ||| ||||||| | |||||||||||||| ||||||||
Sbjct 251 TT-T-GT-T-C------ATTCTATAGAC-------A-AAGGAGGTGAATTTTAGAGTTTG 292
Query 238 TCAATGGAGAATTACGAGGTTCTTGAGCAAATTGGAAAAGGTTCCTTTGGGTCAGCTCTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TCAATGGAGAATTACGAGGTTCTTGAGCAAATTGGAAAAGGTTCCTTTGGGTCAGCTCTT 352
Query 298 CTTGTGAGACATAAACATGAGAAGAAACTGTATGTTTTGAAGAAAATCCGGCTTGCTCGG 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 353 CTTGTGAGACATAAACATGAGAAGAAACTATATGTTTTGAAGAAAATCCGGCTTGCTCGG 412
Query 358 CAGACTGGTAGGACAAGAAGATCTGCTCATCAAGAGATGGAGTTGATTTCAAAGATACAT 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CAGACTGGTAGGACTAGAAGATCTGCTCATCAAGAGATGGAGTTGATTTCAAAGATACAT 472
Query 418 AATCCATTCATTGTGGAATATAAAGATTCTTGGGTTGAAAAGGGATGCTATGTGTGCATT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AATCCATTCATTGTGGAATATAAAGATTCTTGGGTTGAAAAGGGATGCTATGTGTGCATT 532
Query 478 ATCATAGGCTATTGCAAAGGAGGAGACATGGCGGAAGCAATAAAGAAAACCAACGGCGTA 537
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 533 ATCATAGGCTATTGCAAAGGAGGAGACATGGCGGAAGCGATAAAGAAAACCAATGGCGTA 592
Query 538 CACTTCACTGAAGAGAAACTCTGCAAATGGCTTGTTCAGATCTTATTGGCTCTTGAATAC 597
||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct 593 CACTTCACTGAAGAGAAACTCTGCAAATGGCTTTTTTAGCTCTTAATGGCTCTTGAATAC 652
Query 598 TTGCATGCCAATCACATTCTCCATCGAGATGTCAAGTGTTCGAACATATTTTTGACAAAG 657
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 653 TTGCATGCCAATCACATTCTCCATCGCGATGTCAAGTGTTCCAACATATTTTTGACAAAG 712
Query 658 GATCAAGATATACGCCTTGGCGATTTTGGACTCGCTAAAGTCTTAACATCAGATGACCTC 717
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 713 GATCAGGATATACGCCTTGGCGATTTTGGACTTGCCAAAGTCTTAACATCAGATGACCTC 772
Query 718 GCGTCTTCAGTGGTTGGAACACCAAGCTACATGTGTCCCGAGCTACTAGCTGATATACCC 777
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 773 GCGTCTTCAGTGGTTGGAACACCAAGCTACATGTGCCCCGAGCTACTAGCCGATATACCC 832
Query 778 TATGGGTCCAAGTCTGATATTTGGTCGCTAGGATGTTGTATGTATGAGATGACGGCTATG 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 833 TATGGGTCCAAGTCTGATATTTGGTCGCTTGGATGTTGTATGTATGAGATGACGGCTCTG 892
Query 838 AAACCTGCTTTCAAAGCTTTTGACATGCAAGGACTAATCAACAGGATTAACAGATCAATC 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 893 AAACCTGCTTTCAAAGCTTTTGACATGCAAGGACTAATAAACAGGATTAACAGATCAATC 952
Query 898 GTTCCTCCACTTCCGGCGCAATATTCTGCTGCCTTCCGAGGTCTCGTTAAGAGTATGCTC 957
||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 953 GTTCCCCCACTTCCGGCGCAATATTCTGCTGCCTTCCGAGGTCTGGTCAAAAGTATGCTC 1012
Query 958 CGGAAAAATCCAGAACTCAGACCAAGTGCTGCTGAGCTTCTTAGACAACCGCTGCTTCAA 1017
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CGGAAAAATCCAGAACTTAGACCAAGTGCTGCTGAGCTTCTTAGACAACCGCTGCTTCAA 1072
Query 1018 CCGTATATCCAGAAGATTCATTTGAAAGTGAATGATCCAGGAAGTAATGTGTTACCTGCG 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1073 CCTTATATCCAGAAGATTCATTTGAAAGTGAATGATCCAGGAAGTAATGTGTTACATGCC 1132
Query 1078 CAATGGCCAGAATCTGAATCCGCCAGGAGAAACAGTTTTCCAGAACAGAGAAGGCGTCCT 1137
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1133 CAATGGCCAGAATCTGAATCCGCCAGGAGAAACAGCTTTCCAGAGCAGAGAAGGCGTCCT 1192
Query 1138 GCTGGCAAAAGCCATAGCTTTGGTCCAAGCAGGTTTAGGGGTAACCTA-GAAGATTCTGT 1196
||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 1193 GCTGGCAAAAGCCATAGCTTTGGCCCAAGCAGGTTTAGGGGTAACC-AGGAAGATTCTGT 1251
Query 1197 TTCTTCCATaaaaaaaaCTGTGCCCGCATATCTGAATCGTGAAAGGCAAGTGGACTTGTC 1256
|||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 1252 TTCTTCCATAAAAAAACCTGCGCCCGCATATCTGACTCGTGAAAGGCAAGTAGACTTGTC 1311
Query 1257 TACAGATGCAAGCGGTGATGGAACGGTTGTTCGTAGAACTTCAGAGGCTTCTAAGAGTTC 1316
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TACAGATGAAAGCGGTGATGGAACGGTTGTTCGTAGAACTTCAGAGGCTTCTAAGAGTTC 1371
Query 1317 TAGGTATGTACCAGTGAGAGCTTCGGCCTCACCTGTGAGACCTAGACAGCCTAGGAGTGA 1376
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1372 TAGGTATGTTCCAGTGAGAGCTTCGGCCTCACCTGTGAGACCGAGACAGCCTAGGAGTGA 1431
Query 1377 CCTTGGTCAACTTCCTGTTTCATCACAACTTAAAAACCGAAAACCAGCTGCTTTGATACG 1436
|||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| ||
Sbjct 1432 CCTTGGTCAACTTCCTGTATCATCACAGCTTAAAAACCAAAAACCAGCCGCTTTGATTCG 1491
Query 1437 TAGAGCCTCCATGCCTAGCTCAAGAAAACCTGCAAAAGAAATCAAAGACTCTCTGTACAT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 TAGAGCCTCCATGCCTAGCTCAAGAAAACCTGCAAAAGAAATCAAAGACTCTCTGTACAT 1551
Query 1497 TTCGAAAACCAGTTTTCTCCACCAGATAAATTCTCCTGATGTGTCAATGAACGCACCAAG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 TTCGAAAACCAGTTTTCTCCACCAGATAAATTCTCCTGATGTGTCAATGAACGCACCAAG 1611
Query 1557 AATTGACAAGATTGAGTTTCCGTTAGCGTCATACGAGGAAGAGCCTTTTGTCCCGGTTGT 1616
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1612 AATTGACAAGATTGAGTTTCCGCTAGCGTCATACGAGGAAGAGCCTTTTGTTCCGGTTGT 1671
Query 1617 GCGTGGGAAGAAAAAGAAAGCATCGTCTAGAGGTTCCTACAGTCCACCTCCAGAGCCACC 1676
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GCGTGGTAAGAAGAAGAAAGCGTCGTCTAGAGGTTCCTACAGTCCACCTCCAGAGCCACC 1731
Query 1677 ACTAGACTGCTCAATCACAAAAGACAAATTTACTCTTGAACCAGGCCAAAACAGAGAAGG 1736
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1732 ACTAGACTGCTCAATCACAAAAGACAAATTTACTCTTGAATCAGGCCAAAACAGAGAAGG 1791
Query 1737 AGCGATTATGAAGGCGGTGTATGAAGAAGATGCATATCTGGAAGACAGGAGTGAATCATC 1796
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1792 AGCGATTATGAAGGCGGTGTATGAAGA---TGCATATCTGGAAGATAGGAGTGAATCATC 1848
Query 1797 TGATCAAAATGCGACAGCTGGAGCATCAAGCAGGGCTTCGTCGGGTGTAAGGAGACAAAG 1856
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 TGATCAGAATGCGACAGCTGGAGCATCAAGCAGGGCTTCGTCGGGTGTAAGGAGACAAAG 1908
Query 1857 ATTTGATCCTAGCTCTTATCAGCAACGAGCCGAGGCATTGGAGGGATTGCTTGAATTCAG 1916
||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1909 ATTTGATCCTAGCTCTTATCAGCAACGGGCTGAGGCACTGGAGGGATTGCTTGAATTCAG 1968
Query 1917 TGCAAGGTTGCTTCAAGATGAGAGGTACGATGAGCTCAATGTCTTATTAAGACCATTTGG 1976
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1969 TGCAAGGTTGCTTCAAGATGAGAGGTACGATGAGCTCAATGTTTTATTGAGACCCTTTGG 2028
Query 1977 TCCAGGCAAAGTTTCACCCAGAGAAACAGCGATTTGGTTGTCCAAGAGCTTCAAGGAAAC 2036
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 TCCAGGGAAAGTCTCACCCAGAGAAACAGCGATTTGGTTGTCCAAGAGCTTCAAGGAAAC 2088
Query 2037 CACTACTACTAAGCTGGGAGATTGAGAGACGGATTTCTAATTCTAACCTGTTGTGACTTG 2096
||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2089 TACTACTAATAAGCTGGAAGATTGAGAGACGGATTTCTAATTCTAACCTATTGTGACGTG 2148
Query 2097 AAAATTTTCCACCTTT-AACAGTTT---A-TCA---A-GAAAATTGTATCAAAGTTTAAC 2147
|||||||||||||||| |||||||| | ||| | ||||||||||| |||||| |||
Sbjct 2149 AAAATTTTCCACCTTTTAACAGTTTTTTAATCAGTCAAGAAAATTGTATTAAAGTT-AAC 2207
Query 2148 TACCTAGGTTGTCTTCTTTAATGAGTAGCGGACCCTCTTTGTCTGATACATTGAAATTCT 2207
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 2208 TACCTAGGTTGTCTTCTTTAATGAGTAGCTGACCCTCTGTGTCTGATACATTGAAATTCA 2267
Query 2208 AGAAAAAACTTGGCCGGTTACC 2229
||||||||||||||||||||||
Sbjct 2268 AGAAAAAACTTGGCCGGTTACC 2289
> Ahg489646 jgi|Araly1|489646|fgenesh2_kg.6__2780__AT5G28290.1
Length=2136
Score = 974 bits (527), Expect = 0.0
Identities = 840/985 (85%), Gaps = 46/985 (5%)
Strand=Plus/Plus
Query 233 GTTTGTCAATGGAGAATTACGAGGTTCTTGAGCAAATTGGAAAAGGTTCCTTTGGGTCAG 292
|||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 247 GTTT-TCAATGGAGCATTACGAGGTTCTTGAGCAAATTGGGAAAGGTTCTTTTGGGTCAG 305
Query 293 CTCTTCTTGTGAGACATAAACATGAGAAGAAACTGTATGTTTTGAAGAAAATCCGGCTT- 351
||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||| ||
Sbjct 306 CTCTTCTTGTGAGGCATAAGCATGAGAAGAAACTTTATGTTTTGAAGAAAATTCGG-TTA 364
Query 352 GCTCGGCAGACTGGTAGGACAAGAAGATCTGCTCATCAAGAGATGGAGTTGATTTCAAAG 411
||| ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 365 GCTAGGCAGACTGGTAGAACAAGAAGGTCTGCTCATCAAGAGATGGAATTGATCTCAAAG 424
Query 412 ATAC-ATAATCCATTCATTGTGGAATATAAAGATTCTTGGGTTG-AAAAGGGATGCTATG 469
|||| | |||||||| || ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 425 ATACGA-AATCCATTTATCGTGGAATATAAAGATTCTTGGGTTGAAAAAGGG-TGCTATG 482
Query 470 TGTGCATTATCATAGGCTATTGCAAAGGAGGAGACATGGCGGAAGCAATAAAGAAAACCA 529
|||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||
Sbjct 483 TGTGCATTATCATAGGCTATTGCAAAGGCGGTGACATGGCCGAAGCAATAAAGAAAGCCA 542
Query 530 ACGGCGTACACTTCACTGAAGAGAAACTCTGCAAATGGCTTGTTCAGA-TCTTATTGGCT 588
|||||||| | ||| ||||||||||||||||||||||||| || || | ||||| |||||
Sbjct 543 ACGGCGTAGAATTCTCTGAAGAGAAACTCTGCAAATGGCTGGTACA-ACTCTTAATGGCT 601
Query 589 CTTGAATACTTGCATGCCAATCACATTCTCCATCGAGATGTCAAGTGTTCGAACATATTT 648
|||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 602 CTTGAATACTTGCACGCCAGTCACATTCTCCATCGCGATGTCAAGTGTTCAAACATATTC 661
Query 649 TTGAC-AAAGGATCAAGATATACGCCTTGGCGATTTTGGACTCGCTAA-AGTCTTAACAT 706
||||| |||| |||||||||||||||| || ||||| ||||| || || | |||| ||||
Sbjct 662 TTGACGAAAG-ATCAAGATATACGCCTAGGTGATTTCGGACTTGCCAAGA-TCTTGACAT 719
Query 707 CAGATGACCTCGCGTCTTCAGTGGTTGGAACACCAAGCTACATGTGTCCC-GAGCTACTA 765
|||| ||||| || |||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 720 CAGACGACCTTGCTTCTTCAGTGGTTGGAACACCAAGCTACATGTG-CCCTGAGCTTCTT 778
Query 766 GCTGATATACCCTATGGGTCCAAGTCTGATATTTGGTCGCTAGGATGTTGTATGTATGAG 825
|||||||| ||||| || || ||||| |||||||||||||| || |||||||||||||||
Sbjct 779 GCTGATATTCCCTACGGATCAAAGTCGGATATTTGGTCGCTGGGGTGTTGTATGTATGAG 838
Query 826 ATGACGGCTATGAAACCTGCTTTCAAAGCTTTTGACATGCAAGGACTAATCAACAGGATT 885
||||||||| ||||||| || |||||||| |||||||||||||| || |||||||||||
Sbjct 839 ATGACGGCTCTGAAACCGGCATTCAAAGCCTTTGACATGCAAGGGCTGATCAACAGGATA 898
Query 886 AACAGATCAATCGTTCCTCCACTTCCGGCGCAATATTCTGCTGCCTTCCGAGGTCTCGTT 945
||| ||||||||||| |||||||||| || ||||||||| ||||||| ||| |||| |||
Sbjct 899 AACCGATCAATCGTTGCTCCACTTCCTGCACAATATTCTACTGCCTTTCGAAGTCTGGTT 958
Query 946 AAGAGTATGCTCCGGAAAAATCCAGAACTCAGACCAAGTGC-TGCTGAGCTTCTTAGACA 1004
|| || |||||| |||| |||||||||||||||||||| || | |||| ||||| |||||
Sbjct 959 AAAAGCATGCTCAGGAAGAATCCAGAACTCAGACCAAGCGCCT-CTGATCTTCTCAGACA 1017
Query 1005 ACCGCTGCTTCAACCGTATATCCAGAAGATTCATT-TGAAAG-TGAATGAT-CCAGGAAG 1061
|| |||||||| || || | || ||| ||| || | || | ||| | | || ||||
Sbjct 1018 GCCACTGCTTCAGCCCTACGTTCAAAAGGTTC-TTCTCAA-GCTGA--GCTTCCGGGAAC 1073
Query 1062 TAATGTGTTACCTGCGCAATGGCCAGAATCTGAATCCGCCAGGAGAA-ACAGTTTTCCAG 1120
| | | || | || ||| |||||||||| ||||||| | || | ||| |
Sbjct 1074 -AC-GA-T-ACAT------TG-CCA---TCTGAATCCGAAAGGAGAAGA-AGCTATCCTG 1118
Query 1121 AACAGAGAAGGCGTCCTGCTGGCAAAAGCCAT-AGCTTTGGTCCAAGCAGGTTTAGGGGT 1179
| |||||||||||| || |||||||||| | ||||| |||||||||| |||| || ||
Sbjct 1119 AGCAGAGAAGGCGTACTTCTGGCAAAAGTG-TGAGCTTCGGTCCAAGCAAGTTT-GGTGT 1176
Query 1180 A-ACCTAG-AAGATTCTGTTTCTTC 1202
||| || ||||||||||||||||
Sbjct 1177 TGACC-AGGAAGATTCTGTTTCTTC 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83912809735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5