BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04820.1
Length=2377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477752 jgi|Araly1|477752|fgenesh2_kg.3__453__AT3G04820.1 3365 0.0
> Ahg477752 jgi|Araly1|477752|fgenesh2_kg.3__453__AT3G04820.1
Length=2302
Score = 3365 bits (1822), Expect = 0.0
Identities = 2055/2164 (95%), Gaps = 29/2164 (1%)
Strand=Plus/Plus
Query 1 GGCAATGAAATTAAGTAGAACTGTCTTGTCTTGTTTGCCGTCTCTGCTAAAACCCTACTC 60
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1 GGCAATGAAATTAAGTAGAACTGTGTTGTCTTCTTTGCCGTCTCTGCTAAAACCCTACTC 60
Query 61 GAGCTTGAGCTGGACAACGAAAATAGCGACGATAGCTACAAA-CTTTGAAGGTATGAAAA 119
||||||||||||||| || | ||||||||||| ||||| ||| |||||||||||||| ||
Sbjct 61 GAGCTTGAGCTGGACTACTACAATAGCGACGACAGCTA-AAACCTTTGAAGGTATGACAA 119
Query 120 CAGTAGATGAAGCTGACGTGGGCATCTCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTG 179
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 CTGTAGATGAAGCTGACGTGGGCATCTCCTGTTTCATCTCCCAGCTCCCTGGCTTCCGTG 179
Query 180 GAATCCTCAAACAAA-G--ATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTA 236
|||| |||||||||| | ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 180 GAATTCTCAAACAAAGGTCATACGCAGACTTTATTGTTAATGAAGTGGATATCGATGGTA 239
Query 237 ATGTGGTTCATTTGACATCCTTGGACTTGCCTCCTGAGATGGCTGTGAAGGAGGAGGATA 296
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 240 ATGTGGTTCATTTGACATCCTTGGACTTACCTCCTGAGATGGATGTGAAGGAGGAAGATA 299
Query 297 AAGCGAAAAGTTGTGATAATGTACCCCAAAATTATACTTCTGCAGTTGAGTCTTTCAAAT 356
|| |||||| || |||||||||||| ||||| |||||||| ||| |||||||||||| ||
Sbjct 300 AAACGAAAACTTCTGATAATGTACCTCAAAACTATACTTCGGCAATTGAGTCTTTCAGAT 359
Query 357 CTATTTCCAGTGTTACTGATGCAGAGCGTTTGGAAATATTGATCAATCAAGTCACCTCAG 416
| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 CAATTTCCAGTGTCACTGATGCAGAGCGTTTGGAAACATTGATCAATCAAGTCACCTCAG 419
Query 417 GAACTGATGGTGAAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAA 476
||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 GAACTGATGATGAAATCTCACCACTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAA 479
Query 477 CGGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACTGTCGACG 536
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 480 CGGCTATCCACAACTTTGTTAAAGAGAATTTTAAGTTCCTAGTGACTGACACTGTCGATG 539
Query 537 GTCCTGATTCTACTTCAAAATGCATCCGTGTGCGAGTGAATTCAGGAGCCAATAACAACA 596
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 540 GTCCTGATTCTACTTCAAAATGCATCCGTGTGCAAGTGAATTCAGGAGCCCATAACAACA 599
Query 597 GAGGTAATAGATCaaaaaaaCGAAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTT 656
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGGTAATAGATCAAAAAAACGCAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTT 659
Query 657 CAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACA 719
Query 717 AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGCCAAAGTCAT 776
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 720 AAGATACACAAGAGGCCTTGGGATTGATCGGAAAGATGCTAGGCGTTCAGCCAAAGTCCT 779
Query 777 TCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTGTAACTGTGTTCA 836
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 780 TCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTCTCAACTCAGCGTGTAACTGTGTTCA 839
Query 837 AACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTG 896
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AACAGCAAGCCAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTG 899
Query 897 ACTTCTGCAATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACTA 956
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 ACTTCTGCCATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACCA 959
Query 957 TCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATAAAACAATCTGCAGAATCCT 1016
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 TCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATAAAAAAATCTGCAGAATCCT 1019
Query 1017 TGGGGAAAGATGGCTTCATCAACTACTTTGGCTTGCAGCGTTTTGGAAGTGGTTCAGTAC 1076
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1020 TGGGGAAAGATGGCTTCATCAACTACTTTGGTTTGCAGCGTTTTGGAAGTGGTTCAGTAC 1079
Query 1077 CAACCCACCATGTAGGAGCTGCACTATTGAAAGGAGAGTGGAAAGATGCTGTAGACATGA 1136
||||||||||||| ||||||||||||||||| ||||||||||||||||| | | | ||
Sbjct 1080 CAACCCACCATGTTGGAGCTGCACTATTGAAGGGAGAGTGGAAAGATGCCG-A-A--TG- 1134
Query 1137 TTCTTGATCCAAGAGAAACTGAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAG 1196
| | | || | | || | ||||||||||||||||||||||||||||||||||
Sbjct 1135 --CA-G--C-AAT-GCA--TG---G-CATGTAGTAAATGATGCCCGGGAATATTACAAAG 1181
Query 1197 AAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAG 1256
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AAACTGGCGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAG 1241
Query 1257 CCATACTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGCATTC 1316
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1242 CCATACTGCAGTGTCTGAAGAAATGTCCTGGTAACTACCTGCAGGCTCTGAAAGGCATTC 1301
Query 1317 CCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAG 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 CCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAG 1361
Query 1377 CAAGTCTGCGCGTCA-AAAATTATG-GAACCAGCCAAGTTGTGTTGGGGGACTTGGTAAG 1434
||||||||||||||| ||||| ||| || | |||||||||||||||||||||||||||||
Sbjct 1362 CAAGTCTGCGCGTCACAAAAT-ATGAGA-CAAGCCAAGTTGTGTTGGGGGACTTGGTAAG 1419
Query 1435 TACAAAGGTAGATGCTGCAAAAAGAATGGTCGACAGTCTTACCTCTGAGCACAACGAAAG 1494
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1420 TACAAAGGTAGATGCTGAAAAAAGAATGGTTGACAGTCTTACCTCTGAGCACAACGAAAG 1479
Query 1495 CAGCGAAGAGGCATTGGATTGTGACCAGGTAGATGATACTGCTGTTGTAGATCTTCCAGC 1554
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1480 CAGCGAAGAGGCATTGGATTGTGACCACGTAGATGATACTGCTGTTGTAGATCTTCCAGC 1539
Query 1555 TGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTC 1614
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 TGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTT 1599
Query 1615 GACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTCATCTACCCGTCTAATGACAT 1674
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1600 AACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTTATTTACCCATCTAATGACAT 1659
Query 1675 TGCAGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCA 1734
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 TGCGGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCA 1719
Query 1735 CGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAA 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 CGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAA 1779
Query 1795 ACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGA 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 ACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGA 1839
Query 1855 GACGGATCTGGACAGGATACCCATGAACAAGCCGGTGGAGAAAGTTGGATCTACTGAGGA 1914
||||||||||||||||||| || |||||||||||||||| |||||||||||| | |||||
Sbjct 1840 GACGGATCTGGACAGGATAACCGTGAACAAGCCGGTGGATAAAGTTGGATCTGCGGAGGA 1899
Query 1915 AATTGAAGATGAATCAATGAAATCTGATACTAACCCACATGATTC-TGGTGAAACCAATT 1973
||||||||||||| | ||||||||||||||||||||||||| || || |||||||||||
Sbjct 1900 AATTGAAGATGAACCGTTGAAATCTGATACTAACCCACATGAATCATG-TGAAACCAATT 1958
Query 1974 TGAAAGACCAGACAGATAGCAATGAGGCTGAAAAAGACACTGGAAATCCAGATTCTGAGC 2033
|||| ||||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 1959 TGAAGGACCAGATAGATAGCAAAGAGGATGAAAAAGACACTAGAAATCCAGATTCTGAGC 2018
Query 2034 AGACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGG 2093
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 AAACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGG 2078
Query 2094 CAATCAGAGAACTATTAAAGACGTCAACTTCTGTTGCATATCACAAGACACTTAACTAGT 2153
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2079 CAATCAGAGAACTGTTAAAGACGTCAACATCTGTTGCATATCACAAGACACTTAACTAGT 2138
Query 2154 GATT 2157
||||
Sbjct 2139 GATT 2142
Score = 174 bits (94), Expect = 2e-42
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 2201 TTTGCTGGTTATATTACTCTGTTTCAGACACTTAACTAGTGATTCTATCTTGTCTATTTT 2260
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2143 TTTGCTGGTTATATTACTCTGTTTCAGACACTTAACTAGCCATTCTATCTTGTCTGCTTT 2202
Query 2261 AAACATGTGTACATTCATGTATTTGTGCGGAAGTTCAGGAAATTTTGTCTGAAAT 2315
|||||||||| ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2203 AAACATGTGTGCATTCATGTATTTATGCGGAAGTTCAGGAAGTTTTGTCTGAAAT 2257
Score = 84.2 bits (45), Expect = 4e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 2330 AATTTTGGTAACCGGCCAAGTTTTTTCTAGAATTTCAATGTATCAGAC 2377
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2255 AATTTTGGTAACCGGCCAAGTTTTTTCTTGAATTTCAATGTATCAGAC 2302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89550165995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5