BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04820.1 Length=2377 Score E Sequences producing significant alignments: (Bits) Value Ahg477752 jgi|Araly1|477752|fgenesh2_kg.3__453__AT3G04820.1 3365 0.0 > Ahg477752 jgi|Araly1|477752|fgenesh2_kg.3__453__AT3G04820.1 Length=2302 Score = 3365 bits (1822), Expect = 0.0 Identities = 2055/2164 (95%), Gaps = 29/2164 (1%) Strand=Plus/Plus Query 1 GGCAATGAAATTAAGTAGAACTGTCTTGTCTTGTTTGCCGTCTCTGCTAAAACCCTACTC 60 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1 GGCAATGAAATTAAGTAGAACTGTGTTGTCTTCTTTGCCGTCTCTGCTAAAACCCTACTC 60 Query 61 GAGCTTGAGCTGGACAACGAAAATAGCGACGATAGCTACAAA-CTTTGAAGGTATGAAAA 119 ||||||||||||||| || | ||||||||||| ||||| ||| |||||||||||||| || Sbjct 61 GAGCTTGAGCTGGACTACTACAATAGCGACGACAGCTA-AAACCTTTGAAGGTATGACAA 119 Query 120 CAGTAGATGAAGCTGACGTGGGCATCTCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTG 179 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 120 CTGTAGATGAAGCTGACGTGGGCATCTCCTGTTTCATCTCCCAGCTCCCTGGCTTCCGTG 179 Query 180 GAATCCTCAAACAAA-G--ATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTA 236 |||| |||||||||| | ||||||||||||||||||||||||||| ||||| ||||||| Sbjct 180 GAATTCTCAAACAAAGGTCATACGCAGACTTTATTGTTAATGAAGTGGATATCGATGGTA 239 Query 237 ATGTGGTTCATTTGACATCCTTGGACTTGCCTCCTGAGATGGCTGTGAAGGAGGAGGATA 296 |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| Sbjct 240 ATGTGGTTCATTTGACATCCTTGGACTTACCTCCTGAGATGGATGTGAAGGAGGAAGATA 299 Query 297 AAGCGAAAAGTTGTGATAATGTACCCCAAAATTATACTTCTGCAGTTGAGTCTTTCAAAT 356 || |||||| || |||||||||||| ||||| |||||||| ||| |||||||||||| || Sbjct 300 AAACGAAAACTTCTGATAATGTACCTCAAAACTATACTTCGGCAATTGAGTCTTTCAGAT 359 Query 357 CTATTTCCAGTGTTACTGATGCAGAGCGTTTGGAAATATTGATCAATCAAGTCACCTCAG 416 | ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 CAATTTCCAGTGTCACTGATGCAGAGCGTTTGGAAACATTGATCAATCAAGTCACCTCAG 419 Query 417 GAACTGATGGTGAAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAA 476 ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 420 GAACTGATGATGAAATCTCACCACTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAA 479 Query 477 CGGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACTGTCGACG 536 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 480 CGGCTATCCACAACTTTGTTAAAGAGAATTTTAAGTTCCTAGTGACTGACACTGTCGATG 539 Query 537 GTCCTGATTCTACTTCAAAATGCATCCGTGTGCGAGTGAATTCAGGAGCCAATAACAACA 596 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 540 GTCCTGATTCTACTTCAAAATGCATCCGTGTGCAAGTGAATTCAGGAGCCCATAACAACA 599 Query 597 GAGGTAATAGATCaaaaaaaCGAAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTT 656 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 600 GAGGTAATAGATCAAAAAAACGCAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTT 659 Query 657 CAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACA 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACA 719 Query 717 AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGCCAAAGTCAT 776 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 720 AAGATACACAAGAGGCCTTGGGATTGATCGGAAAGATGCTAGGCGTTCAGCCAAAGTCCT 779 Query 777 TCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTGTAACTGTGTTCA 836 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 780 TCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTCTCAACTCAGCGTGTAACTGTGTTCA 839 Query 837 AACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTG 896 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 AACAGCAAGCCAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTG 899 Query 897 ACTTCTGCAATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACTA 956 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 900 ACTTCTGCCATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACCA 959 Query 957 TCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATAAAACAATCTGCAGAATCCT 1016 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 960 TCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATAAAAAAATCTGCAGAATCCT 1019 Query 1017 TGGGGAAAGATGGCTTCATCAACTACTTTGGCTTGCAGCGTTTTGGAAGTGGTTCAGTAC 1076 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1020 TGGGGAAAGATGGCTTCATCAACTACTTTGGTTTGCAGCGTTTTGGAAGTGGTTCAGTAC 1079 Query 1077 CAACCCACCATGTAGGAGCTGCACTATTGAAAGGAGAGTGGAAAGATGCTGTAGACATGA 1136 ||||||||||||| ||||||||||||||||| ||||||||||||||||| | | | || Sbjct 1080 CAACCCACCATGTTGGAGCTGCACTATTGAAGGGAGAGTGGAAAGATGCCG-A-A--TG- 1134 Query 1137 TTCTTGATCCAAGAGAAACTGAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAG 1196 | | | || | | || | |||||||||||||||||||||||||||||||||| Sbjct 1135 --CA-G--C-AAT-GCA--TG---G-CATGTAGTAAATGATGCCCGGGAATATTACAAAG 1181 Query 1197 AAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAG 1256 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 AAACTGGCGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAG 1241 Query 1257 CCATACTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGCATTC 1316 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1242 CCATACTGCAGTGTCTGAAGAAATGTCCTGGTAACTACCTGCAGGCTCTGAAAGGCATTC 1301 Query 1317 CCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAG 1376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1302 CCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAG 1361 Query 1377 CAAGTCTGCGCGTCA-AAAATTATG-GAACCAGCCAAGTTGTGTTGGGGGACTTGGTAAG 1434 ||||||||||||||| ||||| ||| || | ||||||||||||||||||||||||||||| Sbjct 1362 CAAGTCTGCGCGTCACAAAAT-ATGAGA-CAAGCCAAGTTGTGTTGGGGGACTTGGTAAG 1419 Query 1435 TACAAAGGTAGATGCTGCAAAAAGAATGGTCGACAGTCTTACCTCTGAGCACAACGAAAG 1494 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1420 TACAAAGGTAGATGCTGAAAAAAGAATGGTTGACAGTCTTACCTCTGAGCACAACGAAAG 1479 Query 1495 CAGCGAAGAGGCATTGGATTGTGACCAGGTAGATGATACTGCTGTTGTAGATCTTCCAGC 1554 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1480 CAGCGAAGAGGCATTGGATTGTGACCACGTAGATGATACTGCTGTTGTAGATCTTCCAGC 1539 Query 1555 TGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTC 1614 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1540 TGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTT 1599 Query 1615 GACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTCATCTACCCGTCTAATGACAT 1674 |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 1600 AACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTTATTTACCCATCTAATGACAT 1659 Query 1675 TGCAGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCA 1734 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1660 TGCGGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCA 1719 Query 1735 CGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAA 1794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1720 CGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAA 1779 Query 1795 ACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGA 1854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1780 ACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGA 1839 Query 1855 GACGGATCTGGACAGGATACCCATGAACAAGCCGGTGGAGAAAGTTGGATCTACTGAGGA 1914 ||||||||||||||||||| || |||||||||||||||| |||||||||||| | ||||| Sbjct 1840 GACGGATCTGGACAGGATAACCGTGAACAAGCCGGTGGATAAAGTTGGATCTGCGGAGGA 1899 Query 1915 AATTGAAGATGAATCAATGAAATCTGATACTAACCCACATGATTC-TGGTGAAACCAATT 1973 ||||||||||||| | ||||||||||||||||||||||||| || || ||||||||||| Sbjct 1900 AATTGAAGATGAACCGTTGAAATCTGATACTAACCCACATGAATCATG-TGAAACCAATT 1958 Query 1974 TGAAAGACCAGACAGATAGCAATGAGGCTGAAAAAGACACTGGAAATCCAGATTCTGAGC 2033 |||| ||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||| Sbjct 1959 TGAAGGACCAGATAGATAGCAAAGAGGATGAAAAAGACACTAGAAATCCAGATTCTGAGC 2018 Query 2034 AGACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGG 2093 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2019 AAACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGG 2078 Query 2094 CAATCAGAGAACTATTAAAGACGTCAACTTCTGTTGCATATCACAAGACACTTAACTAGT 2153 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2079 CAATCAGAGAACTGTTAAAGACGTCAACATCTGTTGCATATCACAAGACACTTAACTAGT 2138 Query 2154 GATT 2157 |||| Sbjct 2139 GATT 2142 Score = 174 bits (94), Expect = 2e-42 Identities = 108/115 (94%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2201 TTTGCTGGTTATATTACTCTGTTTCAGACACTTAACTAGTGATTCTATCTTGTCTATTTT 2260 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 2143 TTTGCTGGTTATATTACTCTGTTTCAGACACTTAACTAGCCATTCTATCTTGTCTGCTTT 2202 Query 2261 AAACATGTGTACATTCATGTATTTGTGCGGAAGTTCAGGAAATTTTGTCTGAAAT 2315 |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 2203 AAACATGTGTGCATTCATGTATTTATGCGGAAGTTCAGGAAGTTTTGTCTGAAAT 2257 Score = 84.2 bits (45), Expect = 4e-15 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 2330 AATTTTGGTAACCGGCCAAGTTTTTTCTAGAATTTCAATGTATCAGAC 2377 |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2255 AATTTTGGTAACCGGCCAAGTTTTTTCTTGAATTTCAATGTATCAGAC 2302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89550165995 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5