BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04830.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477754 jgi|Araly1|477754|fgenesh2_kg.3__455__AT3G04830.1 1528 0.0
Ahg489645 jgi|Araly1|489645|fgenesh2_kg.6__2779__AT5G28220.1 869 0.0
> Ahg477754 jgi|Araly1|477754|fgenesh2_kg.3__455__AT3G04830.1
Length=1026
Score = 1528 bits (827), Expect = 0.0
Identities = 897/931 (96%), Gaps = 3/931 (0%)
Strand=Plus/Plus
Query 54 gagagagagaTGGTGACGAAAACGGAGGAGATACAGTTAAACCAACTCGAGAATCAAGTT 113
|||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct 1 GAGAGAGAGATGGTGACGAAGACGGAGGAGACACAGTTGAACCAACTCGAGAATCAAGTT 60
Query 114 GAGAATGGAGGAGGAGGTGTTTGGGAGTATCTGTGCCTCGTTCGTAAGCTCAAGGTTCGC 173
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 61 GAGAATGGAGGAGGAGGTGTTTGGGAGTATCTGTGCCTTGTTCGTAAGCTCAAGATTCGC 120
Query 174 CGATCAGAGATTGTGCTCAAGCATGGTCTCTCGATCTTGAACGATTCGGGAAAGCGATCC 233
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 CGATCAGAGATTGTGCTCAAGCACGGTCTCTCGATCTTGAACGATTCGGGAAAGCGATCT 180
Query 234 GCTCTTGGTCCAGATGAATGGACCCTGTATGAGCAGGTAGCAATTGCAGCTATGGACTGT 293
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCTTGGTCCAGATGAATGGACACTGTATGAGCAGGTAGCAATTGCAGCTATGGACTGT 240
Query 294 CAATCTCTCGGTGTTGCACAGAATTGCATCAAGG-TTCTAAAGAAGAAATTTCCGGAGAG 352
|||||||| ||||||||||||||||||||||||| || | ||||||||||||| |||||
Sbjct 241 CAATCTCTTGGTGTTGCACAGAATTGCATCAAGGCTT-TGCAGAAGAAATTTCCAGAGAG 299
Query 353 CAAACGTGTTGGCAAGCTGGAGGCTCTGCTGCTAGAAGCAAAGGGAATGTGGGAAGAGGC 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAACGTGTTGGCAAGCTGGAGGCTCTGCTGCTAGAAGCAAAGGGAATGTGGGAAGAGGC 359
Query 413 TGAAAAAGCATATACAAGCCTTTTGGAGGATAATCCACTTGATCAAGTAATTCACAAAAG 472
||||||||| ||| | ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 360 TGAAAAAGCCTATTCGAGCCTGTTGGAGGATAATCCACTTGATCAAGTAATACACAAAAG 419
Query 473 AAAGGTGGCTATGGCCAAGGCACAAGGCAAATCTTCCTTAGCCATTGAACATCTGAACAA 532
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 420 AAAGGTGGCTATGGCCAAGGCACAGGGCAAACCTTCCTTAGCCATTGAACATCTGAACAA 479
Query 533 GTATCTTGAAGTATTCATGGCTGATCATGATGCCTGGAGAGAACTTGCAGAAATTTATGT 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATATCTTGAAGTATTCATGGCTGATCATGATGCCTGGAGAGAACTTGCAGAAATTTATGT 539
Query 593 TTCCTTGCAAATGTACAAGCAAGCAGCTTTCTGCTACGAGGAGCTCATACTAACTCAGCC 652
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 TTCCTTGCAAATGTACAAGCAAGCAGCTTTCTGCTATGAGGAGCTCATACTAACTCAGCC 599
Query 653 TACTCTTCCATTGTACCACTTAGCATATGCCGATGTTCTCTACACAATAGGTGGACTAGA 712
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 TACTCTTCCATTGTACCACTTAGCATATGCCGATGTTCTCTACACAATGGGTGGACTAGA 659
Query 713 AAACCTCATCGCAGCAAGAAAGTACTATGCAGCAACTATAGACTTGACAGGTGGTAAAAG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAACCTCATCGCAGCAAGAAAGTACTATGCAGCAACTATAGACTTGACAGGTGGTAAAAG 719
Query 773 CACAAGAGCACTTCTCGGAATATGCTTGTGTGGATCAGCAATCGCACAGATCTCAAAAGG 832
||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 720 CACAAGAGCACTTCTCGGAATATGCTTGTGTGGATCAGCGATCGCACAGCTGTCAAAAGG 779
Query 833 CAGGAACAAAGAGGACAAGGACATGGCTGCACCAGAGCTTCAGTCTTTGGCTGCAACTGC 892
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 AAGGAACAAAGAGGACAAGGACATGGCTGCACCAGAGCTTCAGTCTCTGGCTGCAACTGC 839
Query 893 ATTGGAGCGAGAGTACAAGCAAAAAGCTCCCGCTAAGCTCAACCTCCTCACTTCTGCCTT 952
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 ATTGGAGAGAGAGTACAAGCAAAAAGCTCCGGCTAAGCTCAACCTCCTCACTTCTGCCTT 899
Query 953 GAGAAACTTGAAAATCGCTTAG-TTCAAAGC 982
|||||||||||||||| ||||| || |||||
Sbjct 900 GAGAAACTTGAAAATCTCTTAGGTTTAAAGC 930
> Ahg489645 jgi|Araly1|489645|fgenesh2_kg.6__2779__AT5G28220.1
Length=1065
Score = 869 bits (470), Expect = 0.0
Identities = 774/922 (84%), Gaps = 16/922 (2%)
Strand=Plus/Plus
Query 55 agagagagaTGGTGACGAAAACGGAGGAGATACAGTTAAACCAACTCGAGAATCAAGTTG 114
||| |||||||||||||||||| ||||||| || || ||||| ||||||| |||||| |
Sbjct 104 AGA-AGAGATGGTGACGAAAACAGAGGAGACGCAATTGAACCAGCTCGAGATTCAAGTCG 162
Query 115 AGAATGGAGGAGGAGGTGTTTGGGAGTATCTGTGCCTCGTTCGTAAGCTCAAGGTTCGCC 174
| ||||| ||||| || | |||||||||||| || ||||||||||| ||||| ||||||
Sbjct 163 ATAATGGCGGAGGTGGAGCTTGGGAGTATCTTTGTCTCGTTCGTAATCTCAAAATTCGCC 222
Query 175 GATCAGAGATTGTGCTCAAGCATGG-TCTCTCGATCTTGAACGATTCGGGAAAGCGATCC 233
| || |||| ||| | || || || || |||||| ||||| ||| | |||| ||||
Sbjct 223 GGTCGGAGAAAGTGTTAAAACACGGTTC-CTCGATTTTGAATGATCCAAGAAAAAGATCT 281
Query 234 GCTCTTGGTCCAGATGAATGGACCCTGTATGAGCAGGTAGCAATTGCAGCTATGGACTGT 293
|||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 282 GCTCTTGGTCCAGATGAATGGACCCTAAATGAGCAAGTGGCAATTGCAGCTATGGACTGT 341
Query 294 CAATCTCTCGGTGTTGCACAGAATTGCATCAAGG-TTCTAAAGAAGAAATTTCC-GGAGA 351
|||| |||||||||||||||||||||||| |||| || | ||||||||||||| || ||
Sbjct 342 CAATGTCTCGGTGTTGCACAGAATTGCATTAAGGCTT-TGCAGAAGAAATTTCCTGG-GA 399
Query 352 GCAAACGTGTTGGCAAGCTGGAGGC-TCTGCTGCTAGAAGCAAAGGGAATGTGGGAAGAG 410
||||| | ||||| | ||| ||||| | | || || ||||| |||||| | |||| ||||
Sbjct 400 GCAAAAGGGTTGGGAGGCTTGAGGCGT-TACTTCTTGAAGCCAAGGGATTATGGGGAGAG 458
Query 411 GCTGAAAAAGCATATACAAGCCTTTTGGAGGATAATCCACTTGATCAAGTAATTCACAAA 470
||||| |||||||| | || |||||||||||||||||||| || |||| || ||||||
Sbjct 459 GCTGAGGAAGCATATTCGAGTCTTTTGGAGGATAATCCACTCGACCAAGCGATACACAAA 518
Query 471 AGAAAG-GTGGCTATGGCCAAGGCACAAGGCAAATCTTCCTTAGCCATTGAACATCTGAA 529
| ||| |||||||| ||||||||| ||||||| ||||| |||||||||| | ||| |
Sbjct 519 CG-AAGAGTGGCTATATCCAAGGCACTAGGCAAACCTTCCATAGCCATTGAGCTTCTTAC 577
Query 530 CAAGTATCTTGAAGTATTCATGGCTGATCATGATGCCTGGAGAGAACTTGCAGAAATTTA 589
||| ||||||||| |||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 578 CAAATATCTTGAACTATTCATGGCTGATCATGATGCATGGAGAGAGCTTGCAGAACTTTA 637
Query 590 TGTTTCCTTGCAAATGTACAAGCAAGCAGCTTTCTGCTACGAGGAGCTCATACTAACTCA 649
| |||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 638 TCTTTCTTTGCAAATGTACAAACAAGCAGCTTTCTGCTACGAAGAGCTCATACTATCTCA 697
Query 650 GCCTACTCTTCCATTGTACCACTTAGCATATGCCGATGTTCTCTACACAATAGGTGGACT 709
||||||| |||||||||||||| | |||||||| || |||||||| ||||| || ||| |
Sbjct 698 GCCTACTGTTCCATTGTACCACCTCGCATATGCTGACGTTCTCTATACAATCGGCGGAGT 757
Query 710 AGAAAACCTCATCGCAGCAAGAAAGTACTATGCAGCAACTATAGACTTGACAGGTGGTAA 769
||||||| | ||| |||||||||| |||||||||||||| ||||| || ||||| || ||
Sbjct 758 AGAAAACATTATCTCAGCAAGAAAATACTATGCAGCAACCATAGATTTAACAGGCGGCAA 817
Query 770 AAGCACAAGAGCACTTCTCGGAATATGCTTGTGTGGATCAGCAATCGCACAGATCTCAAA 829
|| ||| ||||| ||||||||||| |||||||||| ||| || || |||||| |||||||
Sbjct 818 AAACACCAGAGCTCTTCTCGGAATCTGCTTGTGTGCATCCGCCATTGCACAGCTCTCAAA 877
Query 830 AGGCAGGAACAAAGAGGACAAGGAC---ATGGCTGCACCAGAGCTTCAGTCTTTGGCTGC 886
||||||||||||||||||||| ||| | ||| || ||||||||||| ||| |||||||
Sbjct 878 AGGCAGGAACAAAGAGGACAAAGACGCGACGGCAGCCCCAGAGCTTCATTCTCTGGCTGC 937
Query 887 AACTGCATTGGAGCGAGAGTACAAGCAAAAAGCTCCCG-CTAAGCTCAACCTCCTCACTT 945
| ||||| | ||| ||||||||||||||||||||| | | || ||| | ||| || |||
Sbjct 938 AGCTGCAGTAGAGAAAGAGTACAAGCAAAAAGCTCCGGACAAA-CTCCAGCTCATCTCTT 996
Query 946 CTGCCTTGAGAAACTTGAAAAT 967
| || || |||| |||||||||
Sbjct 997 CCGCGTTAAGAAGCTTGAAAAT 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5