BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04840.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477755 jgi|Araly1|477755|fgenesh2_kg.3__456__AT3G04840.1 1469 0.0
Ahg491188 jgi|Araly1|491188|fgenesh2_kg.7__621__AT4G34670.1 828 0.0
> Ahg477755 jgi|Araly1|477755|fgenesh2_kg.3__456__AT3G04840.1
Length=1015
Score = 1469 bits (795), Expect = 0.0
Identities = 959/1034 (93%), Gaps = 28/1034 (3%)
Strand=Plus/Plus
Query 1 AAATTGAAGAAGCGCCGTAGCAGCATTTTAGGTTAAAACTTATTGTTGATTCTTCTCTAT 60
|||||||||| ||||||||| |||||||||||||||| ||| || ||| || | || |
Sbjct 1 AAATTGAAGAGGCGCCGTAGAAGCATTTTAGGTTAAATCTTGTTCTTG-TTGAT-TC--T 56
Query 61 TCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGG 120
|| || | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TC-TC-T-G------TTTCCTCAGCCATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGG 107
Query 121 GTAGGAAGGGAGGAAAGAAGAAGGCTGTTGATCCTTTCTCCAAGAAAGATTGGTATGATG 180
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 108 GTAGGAAGGGAGGAAAGAAGAAGGCTGTTGATCCTTTCTCCAAGAAGGACTGGTATGATG 167
Query 181 TTAAGGCTCCTTCAATCTTCACTCACA-GGAATGTTGGAAAGACACTTGTTTCCAGAACT 239
| ||||||||||||| |||||| || | |||||||||||||||||||||||||||| |||
Sbjct 168 TCAAGGCTCCTTCAAACTTCAC-CAAACGGAATGTTGGAAAGACACTTGTTTCCAGGACT 226
Query 240 CAGGGTACCAAAATTGCCTCAGAAGGCTTGAAACACAGAGTTTTTGAGGTTTCTCTTGCT 299
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 227 CAGGGTACCAAAATTGCCTCTGAAGGTTTGAAACACAGAGTTTTTGAGGTCTCTCTAGCT 286
Query 300 GATCTTCAAGGTGATGAGGATAACGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTC 359
|||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 287 GATCTTCAAGTTGACGAAGATAATGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTC 346
Query 360 CAGGGCAGGAACGTTCTGTGCCAATTCTGGGGCATGGACTTCACCACCGATAAACTTAGG 419
||||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 347 CAGGGCAGGAACGTTTTGTGCCAATTCTGGGGCATGGACTTCACAACCGACAAGCTTAGG 406
Query 420 TCATTGGTTAAGAAGTGGCAGACTTTGATTGAGGCTCATGTTGATGTTAAAACCACCGAC 479
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 407 TCATTGGTTAAAAAGTGGCAGACTTTGATTGAGGCTCATGTTGATGTCAAAACCACTGAC 466
Query 480 AGTTACACTCTCAGGCTATTCTGTATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAG 539
| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 467 AACTACACTCTGAGGCTATTCTGCATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAG 526
Query 540 AGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGATCCGCAGGAAGATGAGGGACATC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 527 AGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGATCCGCAGGAAGATGAGGGAGATC 586
Query 600 ATGGTTAGGGAAGCTTCCTCATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAA 659
||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 587 ATGATTAAGGAAGCTTCCTCATGTGACCTGAAGGATCTTGTTGCTAAGTTCATTCCTGAA 646
Query 660 GCTATTGGCAGGGAGATTGAGAAGGCAACTCAGGGCATCTACCCTCTTCAGAATGTTTTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GCTATTGGCAGGGAGATTGAGAAGGCAACTCAGGGCATCTACCCTCTTCAGAATGTTTTC 706
Query 720 ATCCGTAAAGTCAAGATCCTCAAGGC-CCCTAAATTCGACCTTGGCAAGCTCATGGATGT 778
||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 707 ATCCGCAAAGTCAAGATCCTCAAGGCACCC-AAATTCGACCTTGGCAAGCTCATGGATGT 765
Query 779 TCACGGAGATTACTCAGCAGAAGATGTTGGTGTTAAGGTAGACAGGCCGGCTGATGAGAT 838
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 766 TCACGGAGATTATTCAGCAGAAGATGTTGGTGTTAAGGTAGAGAGGCCAGCTGATGAGAT 825
Query 839 GGCTGTTGAGGAACCTACTGAAATCATCGGAGCTTAAGAAATCGAGAGATGTCTTTTT-C 897
||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
Sbjct 826 GGCCGTTGAGGAACCTACTGAAATCATCGGAGCTTAAGAATT-GAGAGATCTCTTTTTTC 884
Query 898 TTC-TAAACTTTAGCTTTTTGA-TGCTCTGT--CGTTTCACACACTCTTTTGTTCCCG-- 951
| | ||||||||||||||| | |||| ||| |||||||||| ||||||||||||
Sbjct 885 T-CATAAACTTTAGCTTTTAAAATGCTTTGTGTCGTTTCACAC--TCTTTTGTTCCCTCA 941
Query 952 GTTTAATTTTGCTGTATTGATGACTTTTCTCAGTGTAAACTTGCGAGTTTTTGATAATTT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GTTTAATTTTGCTGTATTGATGACTTTTCTCAGTGTAAACTTGCGAGTTTTTGATAATTT 1001
Query 1012 ATGGAACACCTTTT 1025
||||||||||||||
Sbjct 1002 ATGGAACACCTTTT 1015
> Ahg491188 jgi|Araly1|491188|fgenesh2_kg.7__621__AT4G34670.1
Length=1036
Score = 828 bits (448), Expect = 0.0
Identities = 691/807 (86%), Gaps = 21/807 (3%)
Strand=Plus/Plus
Query 85 CCATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGG 144
||||||| |||||||| |||||||| || || ||||||||||| ||||||||||||||||
Sbjct 107 CCATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGG 166
Query 145 CTGTTGATCCTTTCTCCAAGAAAGATTGGTATGATGTTAAGGCTCCTTCAATC-TTCACT 203
|||||||||||||||||||||| ||||||||||| || ||||||||| | || |||||
Sbjct 167 CTGTTGATCCTTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGCT-TCATTCACC 225
Query 204 CACAGGAATGTTGGAAAGACACTTGTTTCCAGAACTCAGGGTACCAAAATTGCCTCAGAA 263
|||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||
Sbjct 226 CACAGGAATGTTGGCAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGATTGCCTCTGAG 285
Query 264 GG-CTTGAAACACAGAGTTTTTGAGGTTTCTCTTGCTGATCTT-CAAGGTGATGAGGATA 321
|| || ||||||||| |||||||||||||||||||||||| || ||| ||||||||||
Sbjct 286 GGACT-GAAACACAGGGTTTTTGAGGTTTCTCTTGCTGAT-TTACAAAAAGATGAGGATA 343
Query 322 ACGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAACGT-TCTGTGC 380
| || ||||||||||||||||| |||||||||||||| ||||| ||||| || | || |
Sbjct 344 ATGCCTACAGGAAGATCCGTCTTAGAGCTGAAGATGTTCAGGGAAGGAATGTGT-TGACC 402
Query 381 CAATTCTGGGGCATGGACTTCACCACCGATAAACTTAGGTCATTGGTTAAGAAGTGGCAG 440
|| |||||||| ||||| ||||| ||||| || || ||||| ||||| ||||||||||||
Sbjct 403 CAGTTCTGGGGTATGGATTTCACAACCGACAAGCTAAGGTCTTTGGTCAAGAAGTGGCAG 462
Query 441 ACTTTGATTGAGGCTCATGTTGATGTTAAAACCACCGACAGTTACACTCTC-AGGCTATT 499
||||||||||| || ||||| ||||| |||||||| ||| | ||||| || ||||| ||
Sbjct 463 ACTTTGATTGAAGCCCATGTCGATGTGAAAACCACTGACGGCTACAC-CTTGAGGCTGTT 521
Query 500 CTGTATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAGAGGACTTGCTACGCTCAATC 559
||| ||||||||||| ||||||||||||||||| || ||| | ||||| || ||||||||
Sbjct 522 CTGCATCGCCTTCACAAAGAGACGTGCTAACCAAGTGAAGCGTACTTGTTATGCTCAATC 581
Query 560 CAGCCAAATCCGTCAGATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTC 619
|||||||||||||||||||||||| |||||||| || || ||||| | ||| ||||| ||
Sbjct 582 CAGCCAAATCCGTCAGATCCGCAGAAAGATGAGTGAGATTATGGTGAAGGAGGCTTCATC 641
Query 620 ATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGATTGA 679
|||||||| ||||| ||||| || |||||||| || || || ||||| || ||||||||
Sbjct 642 TTGTGACCTCAAGGAGCTTGTGGCCAAGTTCATCCCAGAGGCCATTGGAAGAGAGATTGA 701
Query 680 GAAGGCAACTCAGGGCATCTACCCTCTT-CAGAATGTTTTCATCCGTAAAGTCAAGATCC 738
||||||||| |||||||||||||| || || ||||| |||||||||||||| |||||||
Sbjct 702 GAAGGCAACACAGGGCATCTACCCG-TTGCAAAATGTGTTCATCCGTAAAGTGAAGATCC 760
Query 739 TCAAGGC-CCCTAAATTCGACCTTGGCAAGCTCATGGATGTTCACGGAGATTACTCAGCA 797
| ||||| ||| || || |||||||| ||||||||||| || || ||||||||| ||||
Sbjct 761 TAAAGGCTCCC-AAGTTTGACCTTGGAAAGCTCATGGAGGTGCATGGAGATTACACAGCC 819
Query 798 GAAGATGTTGGTGTTAAGGTAGACAGGCCGGCTGATGAGA---TGGCTGTTGAGGAACCT 854
|| ||||||||||| |||||||||||||| |||||||| | |||||| |||||||
Sbjct 820 GAGGATGTTGGTGTGAAGGTAGACAGGCCAGCTGATGAAACAATGGCTG---AGGAACCA 876
Query 855 ACTGAAATCATCGGAGCTTA-AGAAAT 880
|| ||||||||||||||||| ||||||
Sbjct 877 ACAGAAATCATCGGAGCTTAGAGAAAT 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5